Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 2.2e-191 672.2 353 100.0
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 5.6e-126 454.9 322 78.6
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 2.6e-123 446.0 315 75.6
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 5.8e-123 444.9 312 76.0
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 3.8e-122 442.2 321 74.8
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 1.1e-121 440.7 326 73.9
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 4.2e-121 438.7 317 74.8
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 9.3e-121 437.6 335 72.2
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 9.3e-121 437.6 317 74.4
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 7.8e-120 434.5 315 76.5
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 1.3e-119 433.7 258 85.7
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 1.7e-119 433.3 312 75.3
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 5.1e-119 431.8 318 73.9
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 6.6e-119 431.4 328 71.6
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 8.7e-119 431.0 338 70.4
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 1.9e-118 429.9 311 76.2
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 2.5e-118 429.5 270 84.1
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 2.5e-118 429.5 314 75.5
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.3e-118 429.1 320 73.1
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 7.3e-118 427.9 320 73.1
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.3e-117 427.2 258 84.5
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 2.8e-117 426.0 323 72.4
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 2.8e-117 426.0 259 83.0
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 2.8e-117 426.0 319 74.6
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 4.8e-117 425.2 316 75.0
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 8.1e-117 424.5 330 70.9
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 1.4e-116 423.7 314 72.9
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 2.6e-115 419.5 306 73.5
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 3.4e-115 419.1 328 70.4
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 3.4e-115 419.1 276 79.0
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 1.3e-114 417.2 276 78.3
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 1.3e-114 417.2 333 70.3
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 1.3e-114 417.2 276 78.3
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 1.3e-114 417.2 319 70.8
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 1.7e-114 416.8 344 70.3
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 1.7e-114 416.8 329 70.8
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 1.7e-114 416.8 306 75.2
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 3.8e-114 415.6 257 83.3
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.4e-113 413.7 330 67.3
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 3.2e-113 412.5 320 71.9
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 3.2e-113 412.5 308 73.7
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 7.1e-113 411.4 256 83.6
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 7.1e-113 411.4 368 66.3
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 9.3e-113 411.0 297 74.4
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 9.3e-113 411.0 255 82.4
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 9.3e-113 411.0 263 81.0
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 1.6e-112 410.2 285 76.1
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 2.7e-112 409.5 261 80.5
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 2.7e-112 409.5 296 74.0
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 6.0e-112 408.3 313 71.6
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 7.9e-112 407.9 332 68.7
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 7.9e-112 407.9 262 80.9
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 1.3e-111 407.1 315 71.1
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 1.3e-111 407.1 258 82.2
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 1.3e-111 407.1 301 72.8
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 2.3e-111 406.4 370 63.5
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 3.0e-111 406.0 255 83.1
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 3.9e-111 405.6 329 67.5
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 3.9e-111 405.6 292 73.6
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 3.9e-111 405.6 264 79.9
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 8.7e-111 404.4 308 70.8
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 8.7e-111 404.4 305 72.1
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 1.9e-110 403.3 317 69.4
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.5e-110 402.9 261 81.6
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 2.5e-110 402.9 310 70.6
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 4.3e-110 402.1 262 79.4
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 4.3e-110 402.1 259 79.5
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 2.8e-109 399.4 296 72.6
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 8.1e-109 397.9 312 68.3
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 1.2e-107 394.0 330 67.0
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 3.4e-107 392.5 325 66.2
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 1.1e-105 387.5 258 78.3
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 1.1e-105 387.5 267 75.7
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 1.9e-105 386.7 267 74.9
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 1.9e-105 386.7 267 75.7
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 1.9e-105 386.7 294 72.8
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 1.9e-105 386.7 394 58.6
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 2.4e-105 386.3 267 74.9
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 3.2e-105 386.0 267 75.3
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 5.5e-105 385.2 267 74.9
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.2e-104 384.0 280 75.7
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 2.7e-104 382.9 307 68.4
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 3.5e-104 382.5 349 61.9
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 6.0e-104 381.7 267 74.2
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 7.9e-104 381.3 267 73.8
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 1.0e-103 380.9 304 69.7
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 1.1e-102 377.5 317 65.6
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 1.5e-102 377.1 307 67.1
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 1.9e-102 376.7 367 60.8
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 5.6e-102 375.2 265 73.2
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 7.4e-102 374.8 277 71.5
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 2.1e-101 373.2 307 67.4
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 1.8e-100 370.2 238 81.1
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 1.8e-100 370.2 238 81.1
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 3.4e-99 365.9 282 67.7
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 4.9e-98 362.1 319 63.6
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 7.9e-96 354.8 264 70.1
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 4.3e-94 349.0 249 71.9
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 2.8e-93 346.3 259 67.6
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 6.9e-92 341.7 484 46.1
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 1.2e-91 340.9 250 75.2
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.3e-90 337.4 252 74.6
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 2.1e-88 330.1 212 80.2
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 4.3e-86 322.4 201 85.1
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 9.1e-84 314.7 194 85.6
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 1.3e-82 310.8 239 62.8
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 1.1e-81 307.8 228 74.6
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 2.2e-77 293.5 260 58.1
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 3.7e-77 292.7 270 56.7
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 3.1e-76 289.7 178 84.3
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 1.9e-73 280.4 242 59.5
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 2.5e-73 280.0 230 65.7
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 4.7e-72 275.8 250 53.6
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 5.2e-71 272.3 294 54.4
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 2.6e-70 270.0 247 56.3
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 6.5e-66 255.4 186 74.7
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 2.0e-59 233.8 171 74.3
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 2.7e-56 223.4 177 67.2
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 8.0e-56 221.9 217 58.5
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 2.3e-55 220.3 263 49.0
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 1.3e-53 214.5 269 47.6
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 4.0e-47 193.0 214 53.3
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 5.2e-47 192.6 252 46.4
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 6.3e-45 185.7 271 41.7
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 4.0e-31 139.8 124 62.9
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 7.0e-28 129.0 87 77.0
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 4.6e-27 126.3 142 55.6
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 2.0e-22 110.9 86 68.6
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 3.3e-17 93.6 57 86.0
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 9.5e-17 92.0 53 90.6
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 2.9e-13 80.5 63 60.3
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 1.7e-10 71.2 48 64.6
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 8.7e-10 68.9 48 62.5
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 4.3e-09 66.6 48 60.4
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 6.2e-08 62.8 42 69.0
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 1.4e-07 61.6 87 48.3
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 2.4e-07 60.8 208 30.3


User provided reference genes

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