Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 4.6e-138 494.6 257 100.0
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 5.4e-102 374.8 244 80.3
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 4.7e-98 361.7 228 80.7
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 1.4e-97 360.1 225 82.2
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 8.3e-95 350.9 248 77.8
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 5.4e-94 348.2 256 70.7
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.2e-93 347.1 247 75.3
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 1.6e-93 346.7 256 70.3
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 8.6e-92 340.9 224 76.3
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 1.5e-91 340.1 254 74.0
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 2.5e-91 339.3 221 78.7
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 4.3e-91 338.6 249 70.7
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 2.1e-90 336.3 246 71.5
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 3.6e-90 335.5 244 74.2
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 6.2e-90 334.7 230 75.2
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 8.0e-90 334.3 230 75.2
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 1.8e-89 333.2 261 69.0
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 2.3e-89 332.8 252 71.4
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 6.8e-89 331.3 206 81.1
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 4.4e-88 328.6 209 78.5
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 6.4e-87 324.7 242 70.7
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 2.4e-86 322.8 249 69.5
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 3.2e-86 322.4 233 71.7
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 4.1e-86 322.0 250 69.2
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 7.0e-86 321.2 231 72.7
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 9.2e-86 320.9 248 68.1
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 2.0e-85 319.7 261 65.9
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 4.6e-85 318.5 224 72.3
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 1.3e-84 317.0 208 76.9
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 3.0e-84 315.8 225 73.8
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 3.9e-84 315.5 228 74.6
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 1.1e-83 313.9 249 66.3
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 1.5e-83 313.5 215 73.5
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 2.5e-83 312.8 229 70.3
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 5.6e-83 311.6 246 68.7
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 7.3e-83 311.2 207 75.4
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 1.6e-82 310.1 224 71.4
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 2.3e-81 306.2 233 69.1
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 2.3e-81 306.2 232 69.0
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 8.9e-81 304.3 238 70.6
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 1.5e-80 303.5 247 68.8
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 3.4e-80 302.4 214 72.0
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 9.8e-80 300.8 224 69.6
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 2.9e-79 299.3 264 61.7
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 2.9e-79 299.3 232 68.5
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 4.9e-79 298.5 211 72.0
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 6.4e-79 298.1 217 73.7
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 1.4e-78 297.0 233 67.8
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 3.2e-78 295.8 201 72.6
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 2.7e-77 292.7 209 72.2
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 4.6e-77 292.0 221 67.4
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 1.3e-76 290.4 246 64.6
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 1.3e-76 290.4 263 62.4
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 5.1e-76 288.5 206 69.4
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 8.6e-76 287.7 220 67.3
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 1.1e-75 287.3 221 69.2
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.5e-75 287.0 230 66.1
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 1.9e-75 286.6 207 66.7
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 4.3e-75 285.4 219 68.5
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 4.7e-74 282.0 206 66.0
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 1.8e-73 280.0 199 67.3
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 1.8e-73 280.0 210 67.1
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 2.3e-73 279.6 212 68.9
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.1e-73 279.3 244 64.8
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 3.1e-73 279.3 232 65.9
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 5.2e-73 278.5 250 58.4
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 5.2e-73 278.5 205 67.8
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 8.9e-73 277.7 200 69.5
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 1.5e-72 276.9 212 67.5
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 2.0e-72 276.6 249 58.2
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 5.8e-72 275.0 206 66.0
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 1.3e-71 273.9 253 60.1
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 1.7e-71 273.5 203 68.0
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 2.2e-71 273.1 226 63.7
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 4.9e-71 271.9 225 63.6
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 6.4e-71 271.6 229 66.4
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 6.4e-71 271.6 204 64.7
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.4e-70 270.4 244 62.7
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 1.4e-70 270.4 244 62.7
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 1.9e-70 270.0 206 65.0
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 3.2e-70 269.2 207 67.1
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 2.3e-68 263.1 253 56.9
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 3.0e-68 262.7 247 56.7
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 1.9e-67 260.0 191 69.1
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 4.3e-67 258.8 222 62.6
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 4.3e-67 258.8 222 62.6
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 9.6e-67 257.7 199 64.3
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 6.2e-66 255.0 216 63.0
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 6.2e-66 255.0 216 63.0
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 6.2e-66 255.0 209 66.5
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 1.4e-65 253.8 236 59.7
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 5.2e-65 251.9 232 57.3
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 3.4e-64 249.2 186 65.1
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 9.9e-64 247.7 260 52.7
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 9.9e-64 247.7 200 61.5
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 4.9e-63 245.4 252 54.4
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 1.4e-62 243.8 249 53.4
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 4.2e-62 242.3 188 63.8
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 4.2e-62 242.3 260 51.5
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 7.1e-62 241.5 198 64.1
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 3.5e-61 239.2 254 54.7
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 3.5e-61 239.2 254 54.7
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.0e-60 237.7 205 62.4
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 1.7e-60 236.9 240 53.3
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 2.3e-60 236.5 207 59.4
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 2.3e-60 236.5 207 59.4
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 3.9e-60 235.7 207 59.4
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 6.6e-60 235.0 253 54.5
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 8.7e-60 234.6 156 76.3
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 1.5e-59 233.8 203 57.1
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 3.3e-59 232.6 203 60.6
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 7.3e-59 231.5 203 60.1
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 9.6e-59 231.1 181 60.8
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 1.8e-57 226.9 155 72.3
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 1.8e-57 226.9 252 50.8
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 6.9e-57 224.9 240 51.7
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 9.0e-57 224.6 209 55.0
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 9.0e-57 224.6 209 55.0
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 9.0e-57 224.6 209 55.0
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 1.2e-56 224.2 208 57.2
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.6e-56 223.0 209 54.5
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 3.4e-56 222.6 207 56.0
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 4.5e-56 222.2 208 55.3
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 4.5e-56 222.2 258 49.2
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 2.2e-55 219.9 156 71.8
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 2.2e-55 219.9 198 58.1
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 2.9e-55 219.5 198 59.1
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 4.9e-55 218.8 191 59.7
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 2.7e-53 213.0 226 52.7
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 7.9e-53 211.5 207 55.6
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 1.1e-51 207.6 208 51.9
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.5e-51 207.2 202 55.0
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 2.5e-51 206.5 212 56.1
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 3.1e-49 199.5 220 51.4
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 1.7e-47 193.7 149 67.8
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 8.4e-47 191.4 189 49.7
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 1.4e-46 190.7 198 54.0
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 1.4e-46 190.7 138 73.2
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 3.2e-46 189.5 197 48.7
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 3.2e-46 189.5 197 48.7
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 7.1e-46 188.3 211 49.8
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 6.0e-45 185.3 209 52.6
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 1.8e-44 183.7 216 46.8
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 6.7e-44 181.8 203 47.8
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 1.5e-43 180.6 203 47.3
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 1.5e-43 180.6 225 47.6
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 1.3e-42 177.6 207 46.4
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 1.3e-42 177.6 196 50.5
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 6.2e-42 175.3 194 46.9
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 2.0e-40 170.2 156 57.7
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.3e-39 167.5 200 46.5
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 7.1e-38 161.8 126 65.9
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 7.1e-38 161.8 192 43.8
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 1.6e-37 160.6 231 39.8
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 1.3e-36 157.5 132 64.4
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.8e-36 157.1 248 39.5
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 2.5e-35 153.3 197 43.7
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 3.9e-28 129.4 159 43.4
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.9e-27 127.1 159 43.4
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 2.2e-26 123.6 199 39.2
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 2.9e-23 113.2 90 68.9
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 1.4e-22 110.9 99 63.6
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 3.2e-22 109.8 90 61.1
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 2.3e-20 103.6 157 45.2
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 6.7e-20 102.1 69 79.7
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 7.4e-19 98.6 157 37.6
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 1.0e-15 88.2 63 66.7
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 5.0e-15 85.9 79 60.8
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 1.8e-09 67.4 228 23.7
COL.COLO4_28325 Corchorus olitorius HOM05D004265 ORTHO05D005175 1.6e-08 64.3 41 73.2
Thecc.01G313500 Theobroma cacao HOM05D004265 ORTHO05D045180 1.3e-07 61.2 227 24.7


User provided reference genes

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