Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 4.7e-177 624.4 313 100.0
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 2.6e-175 618.6 313 99.0
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 8.4e-142 507.3 314 80.3
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 1.9e-133 479.6 313 75.7
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 2.5e-133 479.2 307 77.2
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.6e-132 476.5 307 76.9
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 8.8e-131 470.7 313 73.8
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 1.1e-130 470.3 313 73.5
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 1.5e-130 469.9 308 77.9
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 4.3e-130 468.4 310 74.2
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 9.7e-130 467.2 313 73.2
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 1.3e-129 466.8 308 77.3
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 2.4e-128 462.6 311 72.0
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.5e-127 459.9 316 73.4
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 2.0e-127 459.5 308 76.3
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 1.7e-126 456.4 316 72.5
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 2.9e-126 455.7 315 73.3
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 8.5e-126 454.1 307 72.0
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 1.9e-125 453.0 316 72.2
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 2.5e-125 452.6 319 70.8
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 1.6e-124 449.9 313 73.5
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 2.1e-124 449.5 316 71.5
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 2.1e-124 449.5 313 70.9
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 3.0e-123 445.7 363 64.2
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 9.7e-122 440.7 335 66.6
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 2.2e-121 439.5 313 70.6
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 4.8e-121 438.3 316 68.4
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 8.2e-121 437.6 316 69.0
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 4.1e-120 435.3 312 67.6
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 7.0e-120 434.5 311 68.8
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 7.0e-120 434.5 309 68.9
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 2.0e-119 433.0 312 70.5
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 2.6e-119 432.6 312 68.6
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 7.7e-119 431.0 313 69.3
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 1.0e-118 430.6 312 69.2
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 1.3e-118 430.3 312 67.9
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 3.8e-118 428.7 268 78.7
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.5e-117 426.0 307 69.1
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 2.5e-117 426.0 312 67.3
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.6e-116 423.3 322 66.1
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 1.6e-116 423.3 308 69.8
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 2.1e-116 422.9 294 70.4
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 2.1e-116 422.9 311 66.6
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 4.7e-116 421.8 311 67.8
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 8.0e-116 421.0 316 66.5
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 1.4e-115 420.2 307 67.8
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.8e-115 419.9 313 66.1
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 3.0e-115 419.1 281 73.3
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 5.2e-115 418.3 311 67.5
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 6.7e-115 417.9 307 69.1
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 1.1e-114 417.2 312 66.0
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.1e-114 417.2 314 65.9
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 1.5e-114 416.8 316 65.5
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 2.6e-114 416.0 319 64.3
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 3.3e-114 415.6 318 65.7
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 4.4e-114 415.2 311 67.5
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 4.4e-114 415.2 311 67.5
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 9.7e-114 414.1 308 68.5
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 1.7e-113 413.3 308 68.5
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 2.2e-113 412.9 311 64.3
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 1.1e-112 410.6 308 69.8
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 2.4e-112 409.5 316 64.9
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 9.1e-112 407.5 313 66.8
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.2e-111 407.1 303 66.0
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 2.6e-111 406.0 316 64.6
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 2.2e-110 402.9 304 67.8
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.5e-109 400.2 281 66.5
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 9.4e-109 397.5 316 63.6
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 2.3e-107 392.9 311 65.0
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 3.0e-107 392.5 283 67.8
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 6.7e-107 391.3 307 65.1
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 1.2e-106 390.6 276 68.8
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 1.5e-106 390.2 281 67.3
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 5.7e-106 388.3 282 67.7
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 1.7e-105 386.7 327 59.9
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 2.8e-105 386.0 312 62.5
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 4.8e-105 385.2 334 58.7
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 5.3e-104 381.7 326 60.4
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 2.7e-103 379.4 307 63.2
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 1.0e-102 377.5 276 70.3
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 1.3e-102 377.1 280 66.4
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 1.3e-102 377.1 314 61.5
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 6.5e-102 374.8 311 61.4
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 3.2e-101 372.5 321 57.0
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 2.1e-100 369.8 314 61.5
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 2.7e-100 369.4 240 75.8
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 1.4e-99 367.1 313 62.6
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.4e-99 367.1 314 62.1
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 1.2e-98 364.0 240 75.8
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 2.0e-98 363.2 307 60.6
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 1.7e-97 360.1 307 60.6
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 1.7e-97 360.1 307 60.3
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 1.7e-97 360.1 307 59.9
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 2.2e-97 359.8 307 60.3
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 2.8e-97 359.4 307 60.9
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 3.7e-97 359.0 311 62.4
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 6.3e-97 358.2 307 60.3
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 1.4e-96 357.1 279 64.5
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 1.8e-96 356.7 307 59.9
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 1.8e-96 356.7 307 59.6
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 1.6e-95 353.6 307 59.9
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 2.0e-95 353.2 307 59.6
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 2.7e-95 352.8 307 60.3
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 3.5e-95 352.4 307 60.3
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 4.5e-95 352.1 307 60.3
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 7.7e-95 351.3 277 63.9
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 1.3e-94 350.5 307 59.9
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 8.6e-94 347.8 233 73.0
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 4.2e-93 345.5 308 57.8
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 6.1e-92 341.7 307 58.6
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 3.0e-91 339.3 246 69.9
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 8.3e-89 331.3 279 60.2
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 1.8e-88 330.1 249 64.3
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 2.0e-87 326.6 289 58.1
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 4.5e-87 325.5 267 60.7
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 2.6e-82 309.7 222 69.8
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 4.4e-82 308.9 247 64.0
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 2.6e-74 283.1 276 52.2
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 1.7e-73 280.4 279 51.3
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 2.4e-72 276.6 286 48.3
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 6.0e-71 271.9 315 47.6
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 7.1e-64 248.4 199 61.3
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 6.9e-51 205.3 191 53.9
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 4.4e-50 202.6 195 60.0
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 4.3e-45 186.0 169 55.0
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 7.3e-45 185.3 137 65.7
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 4.9e-41 172.6 109 71.6
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 1.1e-40 171.4 280 39.6
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 4.3e-37 159.5 113 70.8
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 8.2e-28 128.6 113 55.8
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 1.1e-11 75.1 272 27.9
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.3e-09 68.2 68 60.3


User provided reference genes

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