Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.1709 Acer truncatum HOM05D006235 ORTHO05D003296 1.0e-35 152.9 81 100.0
Atru.chr13.532 Acer truncatum HOM05D006235 ORTHO05D003296 4.5e-31 137.5 78 92.3
Ciclev10002211m.g Citrus clementina HOM05D006235 ORTHO05D003296 1.7e-25 119.0 78 76.9
CiPaw.15G074000 Carya illinoinensis HOM05D006235 ORTHO05D003296 4.1e-24 114.4 78 73.1
Cfa018433 Carpinus fangiana HOM05D006235 ORTHO05D003296 2.0e-23 112.1 78 71.8
PGR031G3079 Punica granatum HOM05D006235 ORTHO05D003296 5.9e-23 110.5 78 71.8
Haze_17630 Corylus avellana HOM05D000100 ORTHO05D000052 1.3e-22 109.4 78 70.5
Gohir.D05G199200 Gossypium hirsutum HOM05D006235 ORTHO05D003296 1.3e-22 109.4 78 71.8
Potri.014G042000 Populus trichocarpa HOM05D006235 ORTHO05D003296 1.7e-22 109.0 78 69.2
MD08G1032200 Malus domestica HOM05D006235 ORTHO05D003296 3.0e-22 108.2 78 67.9
MD15G1028900 Malus domestica HOM05D006235 ORTHO05D003296 3.0e-22 108.2 78 67.9
Manes.05G162800 Manihot esculenta HOM05D006235 ORTHO05D003296 3.0e-22 108.2 78 66.7
CsaV3_2G028520 Cucumis sativus L. HOM05D006235 ORTHO05D003296 5.0e-22 107.5 78 66.7
Gorai.009G204400 Gossypium raimondii HOM05D006235 ORTHO05D003296 5.0e-22 107.5 78 70.5
Sabra02G0104600 Salix brachista HOM05D000481 ORTHO05D003296 5.0e-22 107.5 78 67.9
Dinv36049 Davidia involucrata HOM05D006235 ORTHO05D003296 6.6e-22 107.1 78 70.5
Lsat_1_v5_gn_4_121700 Lactuca sativa HOM05D006235 ORTHO05D003296 8.6e-22 106.7 72 73.6
Cpa.g.sc64.60 Carica papaya HOM05D006235 ORTHO05D003296 1.1e-21 106.3 78 67.9
TWI56G0916 Tripterygium wilfordii HOM05D006235 ORTHO05D003296 1.1e-21 106.3 78 67.9
Gohir.A05G196101 Gossypium hirsutum HOM05D006235 ORTHO05D003296 1.5e-21 105.9 78 69.2
Duzib093G1545 Durio zibethinus HOM05D006235 ORTHO05D003296 1.9e-21 105.5 78 67.9
MELO3C010926.2 Cucumis melo HOM05D006235 ORTHO05D003296 2.5e-21 105.1 78 65.4
Nitab4.5_0003246g0120 Nicotiana tabacum HOM05D006235 ORTHO05D003296 2.5e-21 105.1 78 64.1
Thecc.08G023000 Theobroma cacao HOM05D006235 ORTHO05D003296 2.5e-21 105.1 78 67.9
COL.COLO4_26358 Corchorus olitorius HOM05D006235 ORTHO05D003296 3.3e-21 104.8 78 67.9
HanXRQChr09g0268521 Helianthus annuus HOM05D006235 ORTHO05D003296 3.3e-21 104.8 78 66.7
Aqoxy5G01690 Aquilegia oxysepala HOM05D006235 ORTHO05D003296 4.3e-21 104.4 78 67.9
Lalb_Chr22g0355421 Lupinus albus HOM05D006235 ORTHO05D003296 4.3e-21 104.4 78 70.5
Potri.002G134000 Populus trichocarpa HOM05D006235 ORTHO05D003296 4.3e-21 104.4 78 67.9
FAN15G1700 Fragaria x ananassa HOM05D006235 ORTHO05D003296 5.6e-21 104.0 79 67.1
Sed0027834 Sechium edule HOM05D006235 ORTHO05D003296 7.3e-21 103.6 78 65.4
FvH4_2g40140 Fragaria vesca HOM05D006235 ORTHO05D003296 9.5e-21 103.2 79 67.1
QL01p055631 Quercus lobata HOM05D006235 ORTHO05D003296 9.5e-21 103.2 78 64.1
RcHm_v2.0_Chr6g0300611 Rosa chinensis HOM05D006235 ORTHO05D003296 1.6e-20 102.4 79 65.8
Nitab4.5_0000110g0280 Nicotiana tabacum HOM05D006235 ORTHO05D003296 2.1e-20 102.1 78 61.5
TWI36G1585 Tripterygium wilfordii HOM05D006235 ORTHO05D003296 2.1e-20 102.1 78 66.7
Prupe.1G382600 Prunus persica HOM05D006235 ORTHO05D003296 2.8e-20 101.7 77 66.2
QL02p007721 Quercus lobata HOM05D006235 ORTHO05D003296 2.8e-20 101.7 78 62.8
Sabra14G0030600 Salix brachista HOM05D006235 ORTHO05D003296 3.6e-20 101.3 78 66.7
PSO700G0260 Papaver somniferum HOM05D006235 ORTHO05D003296 6.2e-20 100.5 78 66.7
CSS0007357 Camellia sinensis var. sinensis HOM05D006235 ORTHO05D003296 8.0e-20 100.1 78 64.1
CSS0035456 Camellia sinensis var. sinensis HOM05D006235 ORTHO05D003296 8.0e-20 100.1 78 64.1
TAR381G0550 Trochodendron aralioides HOM05D006235 ORTHO05D003296 8.0e-20 100.1 77 64.9
unitig_749.g13843 Utricularia gibba HOM05D006235 ORTHO05D003296 8.0e-20 100.1 78 61.5
THA.LOC104816110 Tarenaya hassleriana HOM05D006235 ORTHO05D003296 1.1e-19 99.8 78 61.5
PSO170G2537 Papaver somniferum HOM05D006235 ORTHO05D003296 1.4e-19 99.4 78 65.4
CANSAT01G0611 Cannabis sativa HOM05D006235 ORTHO05D003296 3.1e-19 98.2 78 64.1
CAN.G1126.24 Capsicum annuum HOM05D006235 ORTHO05D003296 5.2e-19 97.4 78 59.0
Cc10_g03250 Coffea canephora HOM05D006235 ORTHO05D003296 8.9e-19 96.7 77 61.0
Thhalv10011736m.g Eutrema salsugineum HOM05D006235 ORTHO05D003296 8.9e-19 96.7 78 61.5
Lj4P783T56 Lonicera japonica HOM05D006235 ORTHO05D003296 8.9e-19 96.7 78 62.8
Solyc04g080000.1 Solanum lycopersicum HOM05D006235 ORTHO05D003296 8.9e-19 96.7 76 59.2
Sopen04g033590 Solanum pennellii HOM05D006235 ORTHO05D003296 8.9e-19 96.7 76 59.2
PGSC0003DMG400027850 Solanum tuberosum HOM05D006235 ORTHO05D003296 8.9e-19 96.7 76 59.2
GSVIVG01009659001 Vitis vinifera HOM05D006235 ORTHO05D003296 8.9e-19 96.7 78 62.8
Ca_13341_v3 Cicer arietinum L. HOM05D006235 ORTHO05D003296 2.0e-18 95.5 78 62.8
DCAR_019511 Daucus carota HOM05D006235 ORTHO05D003296 2.6e-18 95.1 78 61.5
MBI16_g28233_MAGBIO Magnolia biondii HOM05D006235 ORTHO05D003296 4.4e-18 94.4 70 64.3
Medtr1g021995 Medicago truncatula HOM05D006235 ORTHO05D003296 4.4e-18 94.4 78 62.8
MSTRG.1294 Avicennia marina HOM05D006235 ORTHO05D003296 5.8e-18 94.0 78 57.7
Rhsim06G0035900 Rhododendron simsii HOM05D006235 ORTHO05D003296 5.8e-18 94.0 79 58.2
SGA_v2.0_scaffold48G18060 Striga asiatica HOM05D006235 ORTHO05D003296 5.8e-18 94.0 79 57.0
ClCG08G015290 Citrullus lanatus HOM05D006235 ORTHO05D003296 7.5e-18 93.6 78 60.3
VMungo0647G1754 Vigna mungo HOM05D006235 ORTHO05D003296 9.8e-18 93.2 76 61.8
arahy.Tifrunner.gnm1.ann1.6S3G4W Arachis hypogaea HOM05D006235 ORTHO05D003296 1.3e-17 92.8 78 59.0
arahy.Tifrunner.gnm1.ann1.M9U11V Arachis hypogaea HOM05D006235 ORTHO05D003296 1.3e-17 92.8 78 59.0
CARHR037350 Cardamine hirsuta HOM05D006235 ORTHO05D003296 1.3e-17 92.8 78 59.0
Nn5g29519 Nelumbo nucifera HOM05D006235 ORTHO05D003296 1.3e-17 92.8 77 62.3
Aa31LG8G12580 Aethionema arabicum HOM05D006235 ORTHO05D003296 1.7e-17 92.4 77 62.3
Oeu005368.1 Olea europaea HOM05D006235 ORTHO05D003296 1.7e-17 92.4 77 59.7
BcaB04g17481 Brassica carinata HOM05D006235 ORTHO05D003296 2.2e-17 92.0 79 60.8
Sed0009855 Sechium edule HOM05D006235 ORTHO05D003296 2.9e-17 91.7 76 59.2
AT1G47750 Arabidopsis thaliana HOM05D006235 ORTHO05D003296 6.4e-17 90.5 78 56.4
Carub.0001s3660 Capsella rubella HOM05D006235 ORTHO05D003296 6.4e-17 90.5 78 56.4
Glyma.14G076800 Glycine max HOM05D006235 ORTHO05D003296 6.4e-17 90.5 78 57.7
A08p05440 Brassica napus HOM05D006235 ORTHO05D003296 8.3e-17 90.1 79 59.5
BraA08t32549Z Brassica rapa HOM05D006235 ORTHO05D003296 8.3e-17 90.1 79 59.5
Lj5g0012777 Lotus japonicus HOM05D006235 ORTHO05D003296 8.3e-17 90.1 78 60.3
Phvul.001G016000 Phaseolus vulgaris HOM05D006235 ORTHO05D003296 8.3e-17 90.1 78 57.7
TPR.G15747 Trifolium pratense HOM05D006235 ORTHO05D003296 8.3e-17 90.1 78 60.3
AL1G54110 Arabidopsis lyrata HOM05D006235 ORTHO05D003296 1.1e-16 89.7 78 56.4
ATR0787G130 Amborella trichopoda HOM05D006235 ORTHO05D003296 1.9e-16 89.0 71 62.0
Migut.C00693 Erythranthe guttata HOM05D006235 ORTHO05D003296 1.9e-16 89.0 78 51.3
Ah.01g019680 Amaranthus hybridus HOM05D006235 ORTHO05D003296 1.2e-15 86.3 78 56.4
Glyma.17G249000 Glycine max HOM05D006235 ORTHO05D003296 2.0e-15 85.5 78 55.1
BcaC07g37196 Brassica carinata HOM05D006235 ORTHO05D003296 2.7e-15 85.1 79 57.0
MSTRG.1292 Avicennia marina HOM05D006235 ORTHO05D003296 3.5e-15 84.7 78 55.1
CDE04G1780 Ceratophyllum demersum HOM05D006235 ORTHO05D003296 4.6e-15 84.3 65 61.5
Actinidia15304 Actinidia chinensis HOM05D006235 ORTHO05D003296 6.0e-15 84.0 71 57.7
BolC8t47409H Brassica oleracea HOM05D006235 ORTHO05D003296 1.0e-14 83.2 79 55.7
HPP92_000097 Vanilla planifolia HOM05D006235 ORTHO05D003296 1.0e-14 83.2 60 66.7
Psat6g007000 Pisum sativum HOM05D006235 ORTHO05D003296 1.7e-14 82.4 78 56.4
BcaB02g11343 Brassica carinata HOM05D006235 ORTHO05D003296 2.3e-14 82.0 76 56.6
SEGI_19994 Sequoiadendron giganteum HOM05D006235 ORTHO05D003296 3.0e-14 81.6 76 51.3
SalBow7G2606 Salvia bowleyana HOM05D006235 ORTHO05D003296 5.0e-14 80.9 63 61.9
ECA232G0262 Erigeron canadensis HOM05D000853 ORTHO05D000723 8.6e-14 80.1 68 61.8
Peaxi162Scf00057g00614 Petunia axillaris HOM05D006235 ORTHO05D003296 1.5e-13 79.3 69 55.1
Aa31LG10G9710 Aethionema arabicum HOM05D006235 ORTHO05D003296 1.9e-13 79.0 78 52.6
Sc26g0003710 Simmondsia chinensis HOM05D006235 ORTHO05D003296 3.3e-13 78.2 65 56.9
Sc26g0003770 Simmondsia chinensis HOM05D006235 ORTHO05D003296 3.3e-13 78.2 65 56.9
Sp1g34750 Schrenkiella parvula HOM05D006235 ORTHO05D003296 1.2e-12 76.3 78 48.7
SpUn0092_0030 Schrenkiella parvula HOM05D006235 ORTHO05D003296 1.2e-12 76.3 78 48.7
C08p05980 Brassica napus HOM05D006235 ORTHO05D003296 1.6e-12 75.9 76 53.9
A05p21390 Brassica napus HOM05D006235 ORTHO05D003296 2.8e-12 75.1 76 53.9
BraA05t21047Z Brassica rapa HOM05D006235 ORTHO05D003296 2.8e-12 75.1 76 53.9
BcaC05g27609 Brassica carinata HOM05D006235 ORTHO05D003296 3.6e-12 74.7 76 53.9
C05p35980 Brassica napus HOM05D006235 ORTHO05D003296 3.6e-12 74.7 76 53.9
Lj2P262T50 Lonicera japonica HOM05D006235 ORTHO05D003296 3.6e-12 74.7 80 52.5
Os03g0302000 Oryza sativa ssp. japonica HOM05D006235 ORTHO05D003296 2.3e-11 72.0 68 54.4
Mapoly0002s0024 Marchantia polymorpha HOM05D006235 ORTHO05D003296 4.0e-11 71.2 77 46.8
SMO271G0112 Selaginella moellendorffii HOM05D006235 ORTHO05D003296 4.0e-11 71.2 71 50.7
Zm00001eb014180 Zea mays HOM05D006235 ORTHO05D003296 1.5e-10 69.3 65 52.3
HanXRQChr16g0508571 Helianthus annuus HOM05D006235 ORTHO05D003296 2.0e-10 68.9 54 63.0
BolC5t32323H Brassica oleracea HOM05D006235 ORTHO05D003296 9.9e-10 66.6 73 49.3
Pp3c2_11370 Physcomitrium patens HOM05D006235 ORTHO05D003296 1.3e-09 66.2 62 51.6
Atru.chr1.2828 Acer truncatum HOM05D006235 ORTHO05D003296 3.7e-09 64.7 60 55.0
Os03g0301950 Oryza sativa ssp. japonica HOM05D006235 ORTHO05D003296 1.9e-08 62.4 77 45.5
Atru.chr13.531 Acer truncatum HOM05D006235 ORTHO05D003296 3.5e-07 58.2 61 54.1


User provided reference genes

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