Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.1676 Acer truncatum HOM05D007934 ORTHO05D010067 2.0e-127 459.1 242 100.0
Atru.chr2.1662 Acer truncatum HOM05D007934 ORTHO05D010067 3.3e-125 451.8 242 98.3
COL.COLO4_06792 Corchorus olitorius HOM05D007934 ORTHO05D010067 5.6e-69 265.0 220 63.2
Duzib268G0160 Durio zibethinus HOM05D007934 ORTHO05D010067 6.7e-62 241.5 238 57.6
Thecc.04G187000 Theobroma cacao HOM05D007934 ORTHO05D010067 8.7e-62 241.1 234 56.0
FvH4_4g12460 Fragaria vesca HOM05D007934 ORTHO05D010067 4.3e-61 238.8 224 60.7
FAN12G0351 Fragaria x ananassa HOM05D007934 ORTHO05D010067 1.6e-60 236.9 224 60.3
FAN17G0103 Fragaria x ananassa HOM05D007934 ORTHO05D010067 1.6e-60 236.9 217 60.4
Manes.13G117300 Manihot esculenta HOM05D007934 ORTHO05D010067 4.8e-60 235.3 230 57.0
RcHm_v2.0_Chr4g0410771 Rosa chinensis HOM05D007934 ORTHO05D010067 6.2e-60 235.0 224 58.5
Ciclev10033502m.g Citrus clementina HOM05D007934 ORTHO05D010067 4.1e-59 232.3 241 54.8
Prupe.1G176000 Prunus persica HOM05D007934 ORTHO05D010067 1.2e-58 230.7 229 59.8
Cfa008702 Carpinus fangiana HOM05D007934 ORTHO05D010067 3.8e-57 225.7 220 57.7
Prupe.2G050500 Prunus persica HOM05D007934 ORTHO05D010067 8.4e-57 224.6 229 59.0
QL06p027793 Quercus lobata HOM05D007934 ORTHO05D010067 1.9e-56 223.4 221 58.8
Medtr7g021860 Medicago truncatula HOM05D007934 ORTHO05D010067 2.5e-56 223.0 231 53.2
CSS0014535 Camellia sinensis var. sinensis HOM05D007934 ORTHO05D010067 4.2e-56 222.2 229 55.5
CiPaw.02G060500 Carya illinoinensis HOM05D007934 ORTHO05D010067 7.2e-56 221.5 236 52.1
MD04G1026300 Malus domestica HOM05D007934 ORTHO05D010067 6.1e-55 218.4 222 57.2
Psat3g187720 Pisum sativum HOM05D007934 ORTHO05D010067 1.3e-54 217.2 217 55.3
Sabra14G0111200 Salix brachista HOM05D007934 ORTHO05D010067 1.3e-54 217.2 225 57.8
Lalb_Chr10g0092091 Lupinus albus HOM05D007934 ORTHO05D010067 1.8e-54 216.9 218 55.5
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 1.5e-53 213.8 215 54.0
Lj1g0008563 Lotus japonicus HOM05D007934 ORTHO05D010067 1.9e-53 213.4 234 52.1
DCAR_010060 Daucus carota HOM05D007934 ORTHO05D010067 2.5e-53 213.0 216 55.1
Phvul.008G084200 Phaseolus vulgaris HOM05D007934 ORTHO05D010067 1.6e-52 210.3 223 51.6
Glyma.09G276700 Glycine max HOM05D007934 ORTHO05D010067 2.2e-52 209.9 227 51.1
CANSAT78G1949 Cannabis sativa HOM05D007934 ORTHO05D010067 3.7e-52 209.1 244 54.5
Lsat_1_v5_gn_6_58060 Lactuca sativa HOM05D007934 ORTHO05D010067 6.3e-52 208.4 217 53.5
VMungo1383G3460 Vigna mungo HOM05D007934 ORTHO05D010067 4.1e-51 205.7 214 50.5
Solyc09g098115.1 Solanum lycopersicum HOM05D007934 ORTHO05D010067 2.6e-50 203.0 233 50.2
FAN07G0267 Fragaria x ananassa HOM05D007934 ORTHO05D010067 2.9e-49 199.5 217 54.8
Aqoxy2G00204 Aquilegia oxysepala HOM05D007934 ORTHO05D010067 5.0e-49 198.7 224 52.7
THA.LOC104809589 Tarenaya hassleriana HOM05D007934 ORTHO05D010067 7.2e-48 194.9 219 53.0
HanXRQChr11g0341381 Helianthus annuus HOM05D007934 ORTHO05D010067 7.9e-47 191.4 210 51.0
PGSC0003DMG400006568 Solanum tuberosum HOM05D007934 ORTHO05D010067 1.0e-46 191.0 184 57.1
Sopen09g036060 Solanum pennellii HOM05D007934 ORTHO05D010067 1.8e-46 190.3 193 54.9
PGR142G0659 Punica granatum HOM05D007934 ORTHO05D010067 1.1e-45 187.6 214 50.0
MELO3C026115.2 Cucumis melo HOM05D007934 ORTHO05D010067 1.5e-45 187.2 215 49.8
BcaC05g24952 Brassica carinata HOM05D007934 ORTHO05D010067 2.0e-45 186.8 228 50.4
ClCG08G003680 Citrullus lanatus HOM05D007934 ORTHO05D010067 4.3e-45 185.7 225 46.7
Gohir.D05G327600 Gossypium hirsutum HOM05D007934 ORTHO05D010067 5.7e-45 185.3 235 49.4
MBI07_g12253_MAGBIO Magnolia biondii HOM05D007934 ORTHO05D010067 5.7e-45 185.3 228 51.8
Dinv27156 Davidia involucrata HOM05D007934 ORTHO05D010067 9.7e-45 184.5 143 66.4
AT1G10800 Arabidopsis thaliana HOM05D007934 ORTHO05D010067 1.3e-44 184.1 230 49.1
CARHR011020 Cardamine hirsuta HOM05D007934 ORTHO05D010067 1.7e-44 183.7 229 49.8
Gorai.009G351500 Gossypium raimondii HOM05D007934 ORTHO05D010067 2.2e-44 183.3 235 48.9
Sp1g09500 Schrenkiella parvula HOM05D007934 ORTHO05D010067 8.2e-44 181.4 230 49.1
Gohir.A05G327400 Gossypium hirsutum HOM05D007934 ORTHO05D010067 1.4e-43 180.6 235 49.4
BolC5t29659H Brassica oleracea HOM05D007934 ORTHO05D010067 2.4e-43 179.9 228 47.8
C05p09150 Brassica napus HOM05D007934 ORTHO05D010067 3.1e-43 179.5 228 47.8
Carub.0001s1035 Capsella rubella HOM05D007934 ORTHO05D010067 4.1e-43 179.1 230 48.3
Thhalv10009458m.g Eutrema salsugineum HOM05D007934 ORTHO05D010067 9.1e-43 177.9 222 49.5
A06p07590 Brassica napus HOM05D007934 ORTHO05D010067 2.0e-42 176.8 220 49.5
BraA06t23961Z Brassica rapa HOM05D007934 ORTHO05D010067 2.0e-42 176.8 220 49.5
Potri.014G147600 Populus trichocarpa HOM05D007934 ORTHO05D010067 2.6e-42 176.4 194 58.8
Nn1g08266 Nelumbo nucifera HOM05D007934 ORTHO05D010067 2.1e-39 166.8 168 54.8
Eucgr.H00465 Eucalyptus grandis HOM05D007934 ORTHO05D010067 2.7e-39 166.4 165 55.8
CDE02G1388 Ceratophyllum demersum HOM05D007934 ORTHO05D010067 1.0e-33 147.9 189 42.3
PSO170G0593 Papaver somniferum HOM05D007934 ORTHO05D010067 8.5e-33 144.8 175 50.9
Actinidia32959 Actinidia chinensis HOM05D007934 ORTHO05D010067 1.1e-32 144.4 169 52.7
Ah.04g149820 Amaranthus hybridus HOM05D007934 ORTHO05D010067 1.1e-32 144.4 182 46.7
CAN.G681.52 Capsicum annuum HOM05D007934 ORTHO05D010067 1.5e-29 134.0 119 59.7
AL1G21730 Arabidopsis lyrata HOM05D007934 ORTHO05D010067 2.5e-24 116.7 110 55.5
SEGI_13791 Sequoiadendron giganteum HOM05D007934 ORTHO05D010067 1.0e-22 111.3 194 34.5
Mapoly0034s0074 Marchantia polymorpha HOM05D007934 ORTHO05D010067 4.4e-21 105.9 216 34.3
AagrBONN_evm.TU.Sc2ySwM_368.2439 Anthoceros agrestis HOM05D007934 ORTHO05D010067 2.2e-20 103.6 207 33.3
AUR62026200 Chenopodium quinoa HOM05D007934 ORTHO05D010067 1.2e-18 97.8 98 54.1
Pp3c2_28920 Physcomitrium patens HOM05D007934 ORTHO05D010067 1.6e-15 87.4 173 33.5
Pp3c2_28960 Physcomitrium patens HOM05D007934 ORTHO05D010067 1.6e-15 87.4 173 33.5
Mapoly0007s0045 Marchantia polymorpha HOM05D007934 ORTHO05D010067 4.7e-15 85.9 207 33.3
AUR62018491 Chenopodium quinoa HOM05D007934 ORTHO05D010879 5.2e-14 82.4 64 67.2
SMO356G0271 Selaginella moellendorffii HOM05D007934 ORTHO05D010067 1.2e-13 81.3 119 36.1
TAR636G3543 Trochodendron aralioides HOM05D007934 ORTHO05D010067 1.5e-13 80.9 69 58.0
Mapoly0012s0008 Marchantia polymorpha HOM05D007934 ORTHO05D010067 2.6e-13 80.1 181 32.6
Pp3c7_26640 Physcomitrium patens HOM05D007934 ORTHO05D010067 1.3e-12 77.8 121 37.2
CsaV3_6G003110 Cucumis sativus L. HOM05D007934 ORTHO05D010067 1.8e-11 73.9 102 44.1
TAR636G1845 Trochodendron aralioides HOM05D007934 ORTHO05D010067 3.3e-08 63.2 120 42.5
Cfa002814 Carpinus fangiana HOM05D007934 ORTHO05D010067 2.1e-07 60.5 53 54.7


User provided reference genes

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