Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.1650 Acer truncatum HOM05D004910 ORTHO05D006864 0.0e+00 1910.2 1017 100.0
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 0.0e+00 1333.2 1022 70.6
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 0.0e+00 1318.5 1023 71.4
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 0.0e+00 1316.2 1015 72.1
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 0.0e+00 1303.1 1023 71.6
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 0.0e+00 1300.4 1024 68.3
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 0.0e+00 1291.2 1024 70.8
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1274.6 1022 70.3
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 0.0e+00 1266.9 1022 69.8
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1244.2 1022 68.9
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 0.0e+00 1200.7 1043 64.4
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 0.0e+00 1194.1 1021 66.7
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 0.0e+00 1193.3 1038 65.2
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 0.0e+00 1192.6 1019 65.7
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 0.0e+00 1191.0 1021 64.9
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 0.0e+00 1188.3 1024 65.4
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1185.2 1018 66.4
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 0.0e+00 1180.6 1029 64.8
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 0.0e+00 1174.8 1021 65.2
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1151.3 1020 64.5
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1149.0 1019 63.9
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 0.0e+00 1146.3 1022 65.4
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 0.0e+00 1144.8 1019 64.3
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1144.0 1019 64.5
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 0.0e+00 1142.5 1017 65.9
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1139.4 1019 64.0
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 0.0e+00 1107.8 1061 61.6
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 1097.0 1021 60.7
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 1085.5 1024 60.8
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1084.7 1023 60.3
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 0.0e+00 1079.3 1025 59.5
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 0.0e+00 1077.4 1031 60.1
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 1.2e-309 1066.6 1025 59.6
arahy.Tifrunner.gnm1.ann1.X9S6DI Arachis hypogaea HOM05D004910 ORTHO05D006864 1.9e-307 1059.3 1025 59.7
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 5.4e-307 1057.7 1022 58.7
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 1.3e-303 1046.6 1027 56.7
arahy.Tifrunner.gnm1.ann1.L1X5S4 Arachis hypogaea HOM05D004910 ORTHO05D006864 2.1e-303 1045.8 1037 58.2
PSO063G6831 Papaver somniferum HOM05D004910 ORTHO05D006864 6.2e-303 1044.3 1040 59.6
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 2.4e-302 1042.3 1023 58.6
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 6.4e-300 1034.2 1022 59.3
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 1.1e-299 1033.5 1021 57.7
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 4.2e-299 1031.6 1021 57.6
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 1.2e-298 1030.0 1024 58.9
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 1.6e-298 1029.6 1021 58.4
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 1.6e-298 1029.6 1029 57.9
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 6.0e-298 1027.7 1022 58.0
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 3.3e-296 1021.9 1042 58.4
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 3.3e-296 1021.9 1021 57.5
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 2.1e-295 1019.2 1033 57.8
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 5.3e-294 1014.6 868 63.9
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 7.6e-293 1010.7 1030 55.1
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 1.3e-292 1010.0 1012 57.4
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 6.5e-292 1007.7 1025 56.0
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 5.5e-291 1004.6 1019 57.1
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 1.2e-290 1003.4 1041 57.8
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 1.5e-288 996.5 1021 56.8
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 1.5e-288 996.5 866 61.5
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 1.6e-287 993.0 1021 55.6
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 1.1e-286 990.3 1024 54.9
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 2.2e-279 966.1 1019 55.6
Sc26g0002020 Simmondsia chinensis HOM05D004910 ORTHO05D006864 4.8e-279 964.9 1020 56.2
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 5.3e-278 961.4 1059 53.7
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 9.1e-278 960.7 1021 55.2
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 6.5e-276 954.5 941 57.7
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 1.2e-274 950.3 1027 53.9
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 2.1e-274 949.5 1013 55.6
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 8.8e-273 944.1 1026 53.8
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 5.7e-272 941.4 1023 54.6
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 9.7e-272 940.6 1012 56.2
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 1.5e-269 933.3 1021 54.1
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 2.9e-268 929.1 1021 55.6
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 3.2e-267 925.6 781 62.2
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 1.0e-260 904.0 1063 51.7
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 8.5e-260 901.0 1016 51.9
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 1.1e-259 900.6 1020 51.7
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 1.9e-259 899.8 1016 53.2
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 5.2e-257 891.7 1022 54.3
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 9.3e-198 694.9 1043 46.2
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 3.2e-174 616.7 833 42.7
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 7.9e-173 612.1 661 50.5
SEGI_03249 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 4.5e-144 516.5 729 40.7
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 9.4e-142 508.8 656 43.6
PGR083G0666 Punica granatum HOM05D004910 ORTHO05D006864 1.6e-141 508.1 565 57.2
Cpa.g.sc73.58 Carica papaya HOM05D004910 ORTHO05D006864 3.8e-135 486.9 379 64.4
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 1.7e-127 461.5 1104 35.1
Actinidia21200 Actinidia chinensis HOM05D004910 ORTHO05D006864 2.3e-108 397.9 339 64.9
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 2.6e-107 394.4 385 53.8
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 3.7e-98 364.0 1102 31.0
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 3.4e-91 340.9 767 30.8
Cpa.g.sc73.57 Carica papaya HOM05D004910 ORTHO05D006864 3.9e-87 327.4 348 67.5
Actinidia21201 Actinidia chinensis HOM05D004910 ORTHO05D006864 7.3e-86 323.2 411 46.5
CDE12G0963 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 2.5e-78 298.1 376 60.4
SMO347G0286 Selaginella moellendorffii HOM05D004910 ORTHO05D006864 5.6e-78 297.0 652 31.0
Psat4g216320 Pisum sativum HOM05D004910 ORTHO05D006864 2.3e-71 275.0 305 66.2
vmacro13596 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 1.3e-45 189.5 163 71.2
PGSC0003DMG400031109 Solanum tuberosum HOM05D004910 ORTHO05D006864 3.7e-45 188.0 181 65.7
Rhsim07G0047400 Rhododendron simsii HOM05D004910 ORTHO05D006864 1.4e-44 186.0 177 66.7
Lj9A617T57 Lonicera japonica HOM05D004910 ORTHO05D006864 9.1e-44 183.3 141 73.8
CBR_g49462 Chara braunii HOM05D004910 ORTHO05D006864 1.0e-42 179.9 1345 23.2
Os10g0581000 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 2.1e-40 172.2 342 48.8
FvH4_1g21580 Fragaria vesca HOM05D004910 ORTHO05D045425 4.2e-33 147.9 136 60.3
Os04g0218701 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 8.2e-29 133.7 376 43.4
SEGI_03420 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 3.6e-24 118.2 179 49.2
FAN23G3082 Fragaria x ananassa HOM05D004910 ORTHO05D045425 1.2e-16 93.2 66 72.7
vmacro13595 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 1.1e-12 80.1 82 76.8


User provided reference genes

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