Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 2.1e-39 165.2 85 100.0
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 7.1e-35 150.2 80 93.8
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 9.3e-35 149.8 81 93.8
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 9.3e-35 149.8 81 92.6
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.2e-34 149.4 81 92.6
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 1.6e-34 149.1 84 89.3
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 2.1e-34 148.7 81 93.8
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 2.1e-34 148.7 80 93.8
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 2.1e-34 148.7 80 93.8
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 2.1e-34 148.7 80 93.8
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 2.1e-34 148.7 80 93.8
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 2.1e-34 148.7 80 93.8
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 2.7e-34 148.3 81 91.4
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 2.7e-34 148.3 81 91.4
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 2.7e-34 148.3 80 91.2
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 3.5e-34 147.9 80 93.8
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 3.5e-34 147.9 80 92.5
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 3.5e-34 147.9 80 92.5
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 4.6e-34 147.5 81 91.4
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 6.0e-34 147.1 80 93.8
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 7.9e-34 146.7 80 91.2
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.0e-33 146.4 80 92.5
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 1.3e-33 146.0 80 91.2
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 1.3e-33 146.0 80 88.8
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 1.3e-33 146.0 80 92.5
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.3e-33 146.0 80 91.2
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 1.3e-33 146.0 80 91.2
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 1.3e-33 146.0 80 91.2
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.3e-33 146.0 80 92.5
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.8e-33 145.6 80 91.2
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 1.8e-33 145.6 80 91.2
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 1.8e-33 145.6 80 91.2
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.8e-33 145.6 81 88.9
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 2.3e-33 145.2 80 91.2
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 2.3e-33 145.2 80 88.8
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 2.3e-33 145.2 80 90.0
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 2.3e-33 145.2 80 91.2
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 3.0e-33 144.8 80 92.5
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 3.0e-33 144.8 80 90.0
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 3.9e-33 144.4 81 90.1
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 3.9e-33 144.4 81 88.9
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 3.9e-33 144.4 80 90.0
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 3.9e-33 144.4 80 91.2
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 3.9e-33 144.4 80 90.0
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 5.1e-33 144.1 81 90.1
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 5.1e-33 144.1 78 93.6
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 5.1e-33 144.1 80 88.8
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 5.1e-33 144.1 81 88.9
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 5.1e-33 144.1 81 88.9
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 6.7e-33 143.7 77 93.5
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 6.7e-33 143.7 80 90.0
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 6.7e-33 143.7 81 87.7
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 6.7e-33 143.7 80 88.8
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 6.7e-33 143.7 83 86.7
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 8.7e-33 143.3 81 88.9
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 8.7e-33 143.3 80 86.2
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 8.7e-33 143.3 80 90.0
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 8.7e-33 143.3 80 91.2
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 1.1e-32 142.9 78 91.0
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 1.1e-32 142.9 81 90.1
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 1.5e-32 142.5 77 94.8
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 1.5e-32 142.5 80 86.2
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 1.9e-32 142.1 80 88.8
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 1.9e-32 142.1 80 88.8
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 1.9e-32 142.1 80 88.8
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 1.9e-32 142.1 80 88.8
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 1.9e-32 142.1 80 91.2
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 1.9e-32 142.1 80 91.2
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 2.5e-32 141.7 80 87.5
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 2.5e-32 141.7 80 87.5
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 2.5e-32 141.7 81 87.7
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 3.3e-32 141.4 80 88.8
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 3.3e-32 141.4 80 91.2
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 3.3e-32 141.4 80 88.8
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 4.3e-32 141.0 80 87.5
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 4.3e-32 141.0 80 88.8
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 4.3e-32 141.0 80 87.5
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 5.6e-32 140.6 80 87.5
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 5.6e-32 140.6 80 87.5
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 5.6e-32 140.6 81 87.7
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 7.4e-32 140.2 80 87.5
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 7.4e-32 140.2 80 87.5
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 7.4e-32 140.2 80 88.8
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 7.4e-32 140.2 80 88.8
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 7.4e-32 140.2 81 87.7
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 7.4e-32 140.2 80 88.8
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 9.6e-32 139.8 80 87.5
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 1.3e-31 139.4 80 88.8
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 1.6e-31 139.0 80 86.2
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 1.6e-31 139.0 81 88.9
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 1.6e-31 139.0 81 88.9
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 1.6e-31 139.0 80 85.0
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 2.1e-31 138.7 80 86.2
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 2.8e-31 138.3 80 87.5
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 2.8e-31 138.3 80 83.8
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 3.7e-31 137.9 80 85.0
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 4.8e-31 137.5 80 85.0
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 4.8e-31 137.5 80 85.0
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 4.8e-31 137.5 80 85.0
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 4.8e-31 137.5 80 85.0
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 6.2e-31 137.1 80 86.2
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 6.2e-31 137.1 80 86.2
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 6.2e-31 137.1 79 86.1
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 8.1e-31 136.7 80 86.2
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 8.1e-31 136.7 80 86.2
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 8.1e-31 136.7 80 86.2
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 1.1e-30 136.3 80 86.2
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 1.4e-30 136.0 80 85.0
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 1.8e-30 135.6 80 85.0
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 3.1e-30 134.8 80 85.0
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 3.1e-30 134.8 80 83.8
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 3.1e-30 134.8 80 86.2
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 1.2e-29 132.9 77 84.4
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.5e-29 132.5 111 67.6
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 2.0e-29 132.1 80 82.5
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 2.6e-29 131.7 79 82.3
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 4.5e-29 131.0 80 78.8
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 1.7e-28 129.0 79 82.3
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 2.9e-28 128.3 80 78.8
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 6.4e-28 127.1 81 75.3
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 3.2e-27 124.8 80 76.2
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 4.6e-26 120.9 65 93.8
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.9e-24 115.5 64 89.1
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 4.3e-24 114.4 78 71.8
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 1.3e-23 112.8 66 86.4
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.7e-23 111.3 62 88.7
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 2.0e-21 105.5 78 65.4
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 4.5e-21 104.4 77 64.9
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 7.6e-21 103.6 60 86.7
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.9e-19 99.0 60 85.0
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 5.5e-19 97.4 76 68.4
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 9.3e-19 96.7 80 60.0
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.0e-17 93.2 81 56.8
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 2.5e-16 88.6 51 84.3
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 9.7e-16 86.7 80 52.5
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.2e-15 85.5 48 87.5
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 1.1e-14 83.2 51 84.3
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 3.1e-14 81.6 43 90.7
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 5.3e-14 80.9 43 90.7
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 6.9e-14 80.5 50 82.0
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 1.2e-13 79.7 44 86.4
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 1.5e-13 79.3 51 82.4
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 3.4e-13 78.2 44 84.1
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 4.5e-13 77.8 44 84.1
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 4.5e-13 77.8 45 82.2
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 2.2e-12 75.5 42 88.1
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 8.5e-12 73.6 74 55.4
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 1.4e-11 72.8 43 81.4
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 1.4e-11 72.8 73 53.4
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.6e-10 69.3 44 70.5
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.1e-10 68.9 71 52.1
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 3.0e-09 65.1 74 47.3
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.1e-08 63.2 35 85.7
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.9e-08 62.4 59 50.8
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 4.3e-08 61.2 52 63.5
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 5.7e-08 60.8 30 96.7
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 2.2e-07 58.9 29 96.6
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 3.7e-07 58.2 33 84.8
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 4.8e-07 57.8 52 61.5


User provided reference genes

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