Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 9.9e-45 183.3 111 100.0
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 3.6e-39 164.9 109 88.1
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 3.1e-38 161.8 109 90.8
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 1.5e-37 159.5 107 89.7
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 3.8e-36 154.8 107 87.9
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 3.8e-36 154.8 107 87.9
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 3.8e-36 154.8 86 82.6
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 4.9e-36 154.5 84 86.9
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 8.4e-36 153.7 83 86.7
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 1.1e-35 153.3 110 86.4
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 1.9e-35 152.5 83 86.7
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 1.9e-35 152.5 107 86.0
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 2.4e-35 152.1 110 83.6
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 5.4e-35 151.0 107 86.0
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 5.4e-35 151.0 85 84.7
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 7.1e-35 150.6 85 82.4
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 7.1e-35 150.6 103 80.6
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.2e-34 149.8 83 86.7
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 1.2e-34 149.8 107 85.0
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 1.6e-34 149.4 82 86.6
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 2.1e-34 149.1 107 85.0
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 2.1e-34 149.1 108 84.3
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 2.7e-34 148.7 105 85.7
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 3.5e-34 148.3 86 81.4
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 4.6e-34 147.9 84 83.3
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 7.9e-34 147.1 106 84.9
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 1.0e-33 146.7 107 77.6
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 1.3e-33 146.4 86 80.2
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 1.8e-33 146.0 110 80.0
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 3.0e-33 145.2 84 82.1
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 5.1e-33 144.4 83 79.5
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 5.1e-33 144.4 82 85.4
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 6.7e-33 144.1 105 81.9
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 8.7e-33 143.7 103 85.4
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 1.1e-32 143.3 111 72.1
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 1.5e-32 142.9 85 80.0
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 1.9e-32 142.5 108 75.0
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 1.9e-32 142.5 107 72.9
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.9e-32 142.5 107 79.4
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 2.5e-32 142.1 103 83.5
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 2.5e-32 142.1 110 83.6
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 2.5e-32 142.1 103 82.5
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 3.3e-32 141.7 81 80.2
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 3.3e-32 141.7 103 82.5
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 5.6e-32 141.0 108 76.9
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 5.6e-32 141.0 103 82.5
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 7.4e-32 140.6 111 71.2
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 1.3e-31 139.8 108 82.4
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 1.6e-31 139.4 103 82.5
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 1.6e-31 139.4 103 81.6
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 1.6e-31 139.4 85 75.3
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 2.1e-31 139.0 85 76.5
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 2.8e-31 138.7 102 81.4
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 3.7e-31 138.3 82 76.8
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 3.7e-31 138.3 105 82.9
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 4.8e-31 137.9 98 77.6
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 4.8e-31 137.9 85 75.3
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 6.2e-31 137.5 85 78.8
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 6.2e-31 137.5 107 81.3
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 8.1e-31 137.1 107 80.4
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 8.1e-31 137.1 107 80.4
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 8.1e-31 137.1 108 76.9
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 8.1e-31 137.1 109 75.2
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 8.1e-31 137.1 105 76.2
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 8.1e-31 137.1 105 81.9
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 8.1e-31 137.1 85 80.0
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.1e-30 136.7 86 76.7
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 1.4e-30 136.3 108 81.5
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 1.4e-30 136.3 86 79.1
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 1.8e-30 136.0 83 79.5
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 1.8e-30 136.0 106 77.4
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 2.4e-30 135.6 99 86.9
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 2.4e-30 135.6 78 82.1
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 3.1e-30 135.2 85 72.9
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 3.1e-30 135.2 86 75.6
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 4.0e-30 134.8 107 79.4
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 4.0e-30 134.8 85 78.8
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 4.0e-30 134.8 85 72.9
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 5.3e-30 134.4 106 77.4
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 6.9e-30 134.0 85 75.3
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 6.9e-30 134.0 78 82.1
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 1.5e-29 132.9 84 76.2
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 2.0e-29 132.5 105 81.0
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 2.6e-29 132.1 83 75.9
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 7.6e-29 130.6 85 71.8
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 9.9e-29 130.2 108 75.0
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 9.9e-29 130.2 83 74.7
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 1.3e-28 129.8 107 77.6
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.3e-28 129.8 84 72.6
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.3e-28 129.8 84 72.6
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 1.7e-28 129.4 82 75.6
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 1.7e-28 129.4 104 75.0
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 2.9e-28 128.6 80 73.8
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 4.9e-28 127.9 85 72.9
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 6.4e-28 127.5 85 74.1
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 8.4e-28 127.1 85 71.8
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 8.4e-28 127.1 85 71.8
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 8.4e-28 127.1 85 71.8
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 8.4e-28 127.1 85 71.8
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 3.2e-27 125.2 85 72.9
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 1.6e-26 122.9 69 79.7
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 1.6e-26 122.9 85 69.4
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 6.0e-26 120.9 101 79.2
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 1.3e-25 119.8 82 68.3
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 1.3e-25 119.8 103 71.8
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 2.3e-25 119.0 109 65.1
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 3.0e-25 118.6 74 71.6
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 3.9e-25 118.2 77 70.1
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 3.9e-25 118.2 109 64.2
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 5.1e-25 117.9 98 75.5
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 2.5e-24 115.5 76 69.7
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 4.3e-24 114.8 84 66.7
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 1.1e-22 110.2 62 83.9
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 1.8e-22 109.4 73 74.0
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 3.1e-22 108.6 80 68.8
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 1.2e-21 106.7 102 60.8
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 3.4e-21 105.1 80 62.5
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 5.8e-21 104.4 108 56.5
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 1.7e-20 102.8 90 64.4
Ciclev10013836m.g Citrus clementina HOM05D005516 ORTHO05D006713 2.9e-20 102.1 60 76.7
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 3.8e-20 101.7 98 67.3
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 4.2e-19 98.2 60 78.3
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 3.9e-17 91.7 56 76.8
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.1e-16 90.1 81 72.8
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.1e-16 90.1 81 72.8
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 1.9e-16 89.4 63 68.3
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.5e-16 89.0 81 63.0
BcaC03g15036 Brassica carinata HOM05D005516 ORTHO05D006713 7.4e-16 87.4 62 69.4
BolC2t08658H Brassica oleracea HOM05D005516 ORTHO05D006713 7.4e-16 87.4 62 69.4
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 2.4e-14 82.4 83 53.0
TAR633G1766 Trochodendron aralioides HOM05D005516 ORTHO05D006713 2.2e-12 75.9 45 80.0
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 8.8e-09 63.9 64 64.1
Nn6g32378 Nelumbo nucifera HOM05D005516 ORTHO05D006713 7.4e-08 60.8 43 69.8
SMO367G1142 Selaginella moellendorffii HOM05D005516 ORTHO05D006713 2.8e-07 58.9 48 56.2


User provided reference genes

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