Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 9.3e-173 610.1 315 100.0
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 4.0e-99 365.5 352 59.7
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 2.5e-85 319.7 357 53.5
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 1.4e-83 313.9 349 53.6
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 1.8e-83 313.5 358 53.1
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 1.4e-80 303.9 343 53.4
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 6.0e-79 298.5 358 51.1
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 1.0e-78 297.7 347 53.6
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 1.7e-78 297.0 337 53.7
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 5.1e-78 295.4 347 53.0
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 4.3e-77 292.4 344 52.3
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 4.3e-77 292.4 344 52.3
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 5.6e-77 292.0 363 51.2
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 1.6e-76 290.4 348 52.0
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 1.4e-75 287.3 347 52.2
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 3.1e-75 286.2 348 51.7
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 3.1e-75 286.2 347 52.2
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 4.4e-74 282.3 345 52.2
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 1.7e-73 280.4 327 52.3
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 2.9e-73 279.6 346 49.7
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 2.9e-73 279.6 345 50.4
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 6.4e-73 278.5 314 55.7
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 2.4e-72 276.6 346 50.3
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 2.4e-72 276.6 364 48.4
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 4.2e-72 275.8 350 50.6
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 9.3e-72 274.6 345 50.7
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 1.2e-71 274.2 345 49.9
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 2.1e-71 273.5 345 51.0
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 8.7e-70 268.1 350 49.7
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 1.5e-69 267.3 352 49.1
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 1.4e-67 260.8 342 45.9
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 2.6e-66 256.5 360 48.3
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 9.9e-66 254.6 343 47.5
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 6.4e-65 251.9 390 44.9
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 1.1e-64 251.1 358 44.7
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 2.7e-63 246.5 343 46.6
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 2.7e-63 246.5 344 47.1
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 2.3e-62 243.4 351 45.0
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 8.7e-62 241.5 343 44.9
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 1.1e-61 241.1 348 46.3
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 1.9e-61 240.4 338 46.4
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 9.6e-61 238.0 341 45.5
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 1.6e-60 237.3 338 45.6
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 8.1e-60 235.0 332 45.2
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 1.1e-59 234.6 349 44.7
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 1.1e-59 234.6 350 44.6
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 1.4e-59 234.2 355 43.1
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 4.0e-59 232.6 349 44.1
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 5.3e-59 232.3 348 45.4
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 6.9e-59 231.9 341 44.3
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 3.4e-58 229.6 347 42.7
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 4.5e-58 229.2 346 43.9
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 1.3e-57 227.6 307 47.6
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 1.7e-57 227.3 337 43.3
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 2.4e-56 223.4 336 44.6
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 9.3e-56 221.5 342 44.4
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 1.2e-55 221.1 340 41.5
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 1.2e-55 221.1 339 41.6
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 1.6e-55 220.7 342 43.9
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 3.5e-55 219.5 342 43.6
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 7.9e-55 218.4 342 43.3
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 1.0e-54 218.0 339 42.8
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 6.7e-54 215.3 341 41.6
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 8.7e-54 214.9 335 43.3
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 1.5e-53 214.2 346 41.6
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 2.5e-53 213.4 342 42.1
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 3.3e-53 213.0 349 43.0
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 5.6e-53 212.2 346 41.9
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 7.4e-53 211.8 337 42.4
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 9.6e-53 211.5 343 42.3
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 2.1e-52 210.3 340 42.4
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 1.1e-51 208.0 346 42.2
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 1.4e-51 207.6 339 42.8
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 1.8e-51 207.2 342 41.5
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 2.4e-51 206.8 327 41.0
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 3.1e-51 206.5 336 42.0
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 3.1e-51 206.5 339 41.3
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 1.2e-50 204.5 342 41.8
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 2.0e-50 203.8 332 40.7
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 8.4e-49 198.4 388 38.9
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 2.5e-48 196.8 318 40.9
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 2.7e-47 193.4 342 38.6
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 3.5e-47 193.0 362 38.1
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.9e-45 187.2 268 45.9
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 7.4e-45 185.3 248 45.6
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 1.3e-44 184.5 324 39.5
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 2.2e-44 183.7 350 39.1
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 2.8e-44 183.3 381 37.0
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 1.2e-42 177.9 310 39.4
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 1.7e-41 174.1 338 37.3
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 6.5e-41 172.2 347 35.7
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 1.1e-40 171.4 281 40.9
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 1.4e-40 171.0 315 38.7
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 5.5e-40 169.1 461 31.7
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 9.4e-40 168.3 328 37.2
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 1.4e-38 164.5 320 38.1
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 8.8e-38 161.8 357 35.0
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 1.1e-37 161.4 332 39.2
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 1.5e-37 161.0 332 35.2
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 7.4e-37 158.7 156 56.4
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 2.8e-36 156.8 270 42.2
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 8.2e-36 155.2 304 38.2
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 9.1e-35 151.8 263 39.9
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 1.5e-34 151.0 357 31.4
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 3.4e-34 149.8 348 33.9
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 1.3e-33 147.9 299 35.5
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 6.5e-33 145.6 342 35.1
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 2.1e-31 140.6 162 48.1
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 7.9e-31 138.7 206 46.1
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 8.8e-30 135.2 305 33.8
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 7.4e-29 132.1 294 35.7
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 7.4e-29 132.1 207 44.9
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 8.5e-25 118.6 253 37.5
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 1.6e-23 114.4 248 35.1
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 3.9e-22 109.8 184 39.7
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 7.4e-21 105.5 148 45.3
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 1.8e-19 100.9 165 44.2
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 1.8e-19 100.9 262 34.0
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 1.8e-19 100.9 262 34.0
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 1.8e-19 100.9 262 34.0
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 5.9e-18 95.9 94 59.6
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 1.0e-17 95.1 98 49.0
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 1.3e-17 94.7 215 33.5
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 8.5e-17 92.0 285 29.8
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 1.9e-16 90.9 101 51.5
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 5.5e-16 89.4 223 33.6
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 7.2e-16 89.0 365 27.1
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 1.6e-15 87.8 250 33.2
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 2.6e-13 80.5 66 60.6
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 7.5e-13 79.0 66 59.1
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 9.7e-13 78.6 162 29.0
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 1.1e-11 75.1 406 25.4
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 1.2e-10 71.6 121 42.1
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 7.2e-08 62.4 66 56.1
Sopen00g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 2.3e-06 57.4 56 57.1


User provided reference genes

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