Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.1379 Acer truncatum HOM05D006263 ORTHO05D007549 3.8e-207 724.5 352 100.0
Ciclev10020896m.g Citrus clementina HOM05D006263 ORTHO05D007549 2.7e-160 568.9 347 79.0
Gorai.007G289300 Gossypium raimondii HOM05D006263 ORTHO05D007549 1.2e-149 533.5 348 72.7
Gohir.D11G269500 Gossypium hirsutum HOM05D006263 ORTHO05D007549 1.0e-148 530.4 348 72.4
Gohir.A11G259300 Gossypium hirsutum HOM05D006263 ORTHO05D007549 5.2e-148 528.1 348 72.1
Potri.006G233200 Populus trichocarpa HOM05D006263 ORTHO05D007549 2.0e-147 526.2 351 72.6
Duzib177G1028 Durio zibethinus HOM05D006263 ORTHO05D007549 5.7e-147 524.6 350 74.0
Dinv14580 Davidia involucrata HOM05D006263 ORTHO05D007549 1.1e-145 520.4 339 73.5
COL.COLO4_13602 Corchorus olitorius HOM05D006263 ORTHO05D007549 4.1e-145 518.5 342 73.7
Thecc.05G294200 Theobroma cacao HOM05D006263 ORTHO05D007549 7.0e-145 517.7 345 72.8
Potri.019G034400 Populus trichocarpa HOM05D006263 ORTHO05D007549 9.2e-145 517.3 350 71.4
Manes.09G141600 Manihot esculenta HOM05D006263 ORTHO05D007549 1.2e-144 516.9 348 71.0
TWI34G1357 Tripterygium wilfordii HOM05D006263 ORTHO05D007549 4.6e-144 515.0 346 73.1
Sabra19G0044500 Salix brachista HOM05D006263 ORTHO05D007549 2.9e-143 512.3 347 71.8
C09p58780 Brassica napus HOM05D006263 ORTHO05D007549 4.7e-141 505.0 341 68.6
Prupe.7G003700 Prunus persica HOM05D006263 ORTHO05D007549 6.2e-141 504.6 348 70.4
BcaC04g18720 Brassica carinata HOM05D006263 ORTHO05D007549 1.4e-140 503.4 341 68.9
BolC9t58720H Brassica oleracea HOM05D006263 ORTHO05D007549 6.8e-140 501.1 342 68.7
THA.LOC104827270 Tarenaya hassleriana HOM05D006263 ORTHO05D007549 6.8e-140 501.1 338 71.3
BraA10t44195Z Brassica rapa HOM05D006263 ORTHO05D007549 7.5e-139 497.7 341 68.3
Rhsim04G0087300 Rhododendron simsii HOM05D006263 ORTHO05D007549 9.8e-139 497.3 344 69.2
Haze_19416 Corylus avellana HOM05D006263 ORTHO05D007549 1.3e-138 496.9 340 70.3
AT5G18200 Arabidopsis thaliana HOM05D006263 ORTHO05D007549 1.7e-138 496.5 342 69.6
Cfa016439 Carpinus fangiana HOM05D006263 ORTHO05D007549 1.7e-138 496.5 340 70.9
Lj2A357T95 Lonicera japonica HOM05D006263 ORTHO05D007549 2.2e-138 496.1 340 70.3
TAR623G0038 Trochodendron aralioides HOM05D006263 ORTHO05D007549 2.2e-138 496.1 343 70.6
A10p21320 Brassica napus HOM05D006263 ORTHO05D007549 2.9e-138 495.7 341 68.3
Haze_19445 Corylus avellana HOM05D006263 ORTHO05D007549 2.9e-138 495.7 340 70.3
Carub.0006s1648 Capsella rubella HOM05D006263 ORTHO05D007549 3.7e-138 495.4 339 70.2
Sp6g26120 Schrenkiella parvula HOM05D006263 ORTHO05D007549 6.4e-138 494.6 342 69.0
AL6G29400 Arabidopsis lyrata HOM05D006263 ORTHO05D007549 1.9e-137 493.0 341 70.4
CARHR194860 Cardamine hirsuta HOM05D006263 ORTHO05D007549 2.4e-137 492.7 341 68.6
Sabra19G0042300 Salix brachista HOM05D006263 ORTHO05D007549 2.4e-137 492.7 393 63.6
BcaB08g36696 Brassica carinata HOM05D006263 ORTHO05D007549 4.1e-137 491.9 339 69.3
Oeu060008.1 Olea europaea HOM05D006263 ORTHO05D007549 4.1e-137 491.9 338 69.5
GSVIVG01033398001 Vitis vinifera HOM05D006263 ORTHO05D007549 5.4e-137 491.5 343 67.3
CiPaw.10G000900 Carya illinoinensis HOM05D006263 ORTHO05D007549 4.6e-136 488.4 347 68.9
CAN.G216.5 Capsicum annuum HOM05D006263 ORTHO05D007549 6.0e-136 488.0 348 68.1
Thhalv10013996m.g Eutrema salsugineum HOM05D006263 ORTHO05D007549 1.0e-135 487.3 342 68.4
CANSAT78G2484 Cannabis sativa HOM05D006263 ORTHO05D007549 8.6e-135 484.2 351 67.8
PGSC0003DMG400008259 Solanum tuberosum HOM05D006263 ORTHO05D007549 4.3e-134 481.9 348 67.2
CSS0025413 Camellia sinensis var. sinensis HOM05D006263 ORTHO05D007549 7.3e-134 481.1 346 67.6
ClCG05G001960 Citrullus lanatus HOM05D006263 ORTHO05D007549 1.6e-133 479.9 341 66.9
Glyma.16G153300 Glycine max HOM05D006263 ORTHO05D007549 1.6e-133 479.9 348 67.2
Solyc10g050850.2 Solanum lycopersicum HOM05D006263 ORTHO05D007549 1.6e-133 479.9 348 66.7
Nitab4.5_0002825g0060 Nicotiana tabacum HOM05D006263 ORTHO05D007549 2.8e-133 479.2 339 66.7
MELO3C006156.2 Cucumis melo HOM05D006263 ORTHO05D007549 4.7e-133 478.4 341 66.3
MD12G1003100 Malus domestica HOM05D006263 ORTHO05D007549 6.2e-133 478.0 346 66.2
Aqoxy1G00489 Aquilegia oxysepala HOM05D006263 ORTHO05D007549 8.1e-133 477.6 347 67.4
Sopen10g022420 Solanum pennellii HOM05D006263 ORTHO05D007549 8.1e-133 477.6 348 66.4
DCAR_013689 Daucus carota HOM05D006263 ORTHO05D007549 1.8e-132 476.5 338 67.5
Eucgr.L01413 Eucalyptus grandis HOM05D006263 ORTHO05D007549 1.8e-132 476.5 342 67.0
QL07p019666 Quercus lobata HOM05D006263 ORTHO05D007549 2.3e-132 476.1 349 66.2
Hund06464 Selenicereus undatus HOM05D006263 ORTHO05D007549 2.3e-132 476.1 346 65.9
Nn7g35844 Nelumbo nucifera HOM05D006263 ORTHO05D007549 4.0e-132 475.3 350 67.1
Eucgr.K02258 Eucalyptus grandis HOM05D006263 ORTHO05D007549 5.2e-132 474.9 342 66.7
PGR042G1093 Punica granatum HOM05D006263 ORTHO05D007549 8.9e-132 474.2 344 65.1
Nitab4.5_0000001g0100 Nicotiana tabacum HOM05D006263 ORTHO05D007549 1.5e-131 473.4 339 65.5
Phvul.004G080400 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 1.5e-131 473.4 348 67.0
Aa31LG11G11400 Aethionema arabicum HOM05D006263 ORTHO05D007549 2.0e-131 473.0 373 63.5
PSO339G1401 Papaver somniferum HOM05D006263 ORTHO05D007549 2.6e-131 472.6 343 66.2
Lj6g0008715 Lotus japonicus HOM05D006263 ORTHO05D007549 5.8e-131 471.5 346 66.2
Psat1g096040 Pisum sativum HOM05D006263 ORTHO05D007549 9.8e-131 470.7 345 64.1
Migut.B01469 Erythranthe guttata HOM05D006263 ORTHO05D007549 1.3e-130 470.3 339 65.2
Lalb_Chr06g0173981 Lupinus albus HOM05D006263 ORTHO05D007549 2.9e-130 469.2 350 65.7
VMungo0464G2181 Vigna mungo HOM05D006263 ORTHO05D007549 3.7e-130 468.8 347 65.1
Medtr6g029470 Medicago truncatula HOM05D006263 ORTHO05D007549 1.1e-129 467.2 347 65.4
PSO384G1918 Papaver somniferum HOM05D006263 ORTHO05D007549 3.2e-129 465.7 343 65.6
arahy.Tifrunner.gnm1.ann1.NGU2DL Arachis hypogaea HOM05D006263 ORTHO05D007549 7.1e-129 464.5 349 64.2
HanXRQChr01g0024721 Helianthus annuus HOM05D006263 ORTHO05D007549 1.0e-127 460.7 345 66.1
Cc06_g22910 Coffea canephora HOM05D006263 ORTHO05D007549 2.3e-127 459.5 343 64.7
TAR369G0989 Trochodendron aralioides HOM05D006263 ORTHO05D007549 8.6e-127 457.6 339 67.3
MSTRG.20649 Avicennia marina HOM05D006263 ORTHO05D007549 1.1e-126 457.2 336 63.4
RcHm_v2.0_Chr3g0497171 Rosa chinensis HOM05D006263 ORTHO05D007549 2.5e-126 456.1 346 64.7
AUR62012878 Chenopodium quinoa HOM05D006263 ORTHO05D007549 1.6e-125 453.4 341 63.9
Ca_04490_v3 Cicer arietinum L. HOM05D006263 ORTHO05D007549 3.6e-125 452.2 348 62.9
SGA_v2.0_scaffold145G36025 Striga asiatica HOM05D006263 ORTHO05D007549 2.3e-124 449.5 339 61.7
AUR62027102 Chenopodium quinoa HOM05D006263 ORTHO05D007549 3.1e-124 449.1 341 62.5
Lsat_1_v5_gn_1_59641 Lactuca sativa HOM05D006263 ORTHO05D007549 4.0e-124 448.7 341 63.6
ECA285G0004 Erigeron canadensis HOM05D006263 ORTHO05D007549 8.9e-124 447.6 347 65.1
CDE02G1162 Ceratophyllum demersum HOM05D006263 ORTHO05D007549 1.5e-123 446.8 338 63.3
HPP92_015639 Vanilla planifolia HOM05D006263 ORTHO05D007549 9.9e-123 444.1 338 62.7
FAN23G2537 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.4e-121 440.3 337 64.1
FvH4_1g28080 Fragaria vesca HOM05D006263 ORTHO05D007549 2.4e-121 439.5 337 64.1
FAN19G0970 Fragaria x ananassa HOM05D006263 ORTHO05D007549 3.2e-121 439.1 337 64.1
Peaxi162Scf00076g01055 Petunia axillaris HOM05D006263 ORTHO05D007549 1.2e-120 437.2 339 61.9
unitig_26.g9717 Utricularia gibba HOM05D006263 ORTHO05D007549 2.7e-120 436.0 340 60.3
FAN26G0246 Fragaria x ananassa HOM05D006263 ORTHO05D007549 2.3e-119 433.0 337 63.8
FAN28G0550 Fragaria x ananassa HOM05D006263 ORTHO05D007549 3.0e-119 432.6 337 63.5
Zm00001eb301000 Zea mays HOM05D006263 ORTHO05D007549 3.9e-119 432.2 353 59.2
ATR0697G038 Amborella trichopoda HOM05D006263 ORTHO05D007549 8.6e-119 431.0 377 59.7
Cpa.g.sc51.112 Carica papaya HOM05D006263 ORTHO05D007549 2.8e-117 426.0 347 64.3
FAN28G1368 Fragaria x ananassa HOM05D006263 ORTHO05D007549 2.8e-117 426.0 337 62.3
vmacro09144 Vaccinium macrocarpon HOM05D006263 ORTHO05D007549 4.9e-114 415.2 341 59.8
Ca_04491_v3 Cicer arietinum L. HOM05D006263 ORTHO05D000429 6.4e-114 414.8 341 57.2
EL10Ac9g22064 Beta vulgaris HOM05D006263 ORTHO05D007549 1.9e-113 413.3 351 58.7
Actinidia17306 Actinidia chinensis HOM05D000412 ORTHO05D000429 5.4e-113 411.8 290 69.0
Sc18g0007080 Simmondsia chinensis HOM05D006263 ORTHO05D007549 1.6e-112 410.2 347 60.2
Psat1g096000 Pisum sativum HOM05D006263 ORTHO05D007549 3.5e-112 409.1 339 59.0
SalBow5G0264 Salvia bowleyana HOM05D006263 ORTHO05D007549 6.0e-112 408.3 339 58.7
TPR.G34629 Trifolium pratense HOM05D006263 ORTHO05D007549 1.7e-111 406.8 345 55.7
Ah.01g007390 Amaranthus hybridus HOM05D006263 ORTHO05D007549 6.2e-109 398.3 438 47.7
MBI11_g31289_MAGBIO Magnolia biondii HOM05D006263 ORTHO05D007549 1.7e-106 390.2 357 57.1
Medtr6g029530 Medicago truncatula HOM05D006263 ORTHO05D007549 1.3e-103 380.6 339 53.7
Oeu003888.1 Olea europaea HOM05D006263 ORTHO05D007549 1.3e-103 380.6 265 69.8
SEGI_37923 Sequoiadendron giganteum HOM05D006263 ORTHO05D007549 1.1e-97 360.9 355 49.9
Eucgr.A02096 Eucalyptus grandis HOM05D006263 ORTHO05D007549 1.2e-96 357.5 290 61.7
CsaV3_3G009370 Cucumis sativus L. HOM05D006263 ORTHO05D007549 4.8e-93 345.5 260 63.8
Sed0020840 Sechium edule HOM05D006263 ORTHO05D007549 1.5e-91 340.5 257 63.8
Os07g0171200 Oryza sativa ssp. japonica HOM05D006263 ORTHO05D007549 3.9e-87 325.9 236 65.7
Hma1.2p1_0376F.1_g139140 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 3.5e-80 302.8 185 77.8
Hma1.2p1_0376F.1_g139150 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 7.9e-80 301.6 189 76.2
Mapoly0103s0062 Marchantia polymorpha HOM05D006263 ORTHO05D007549 1.7e-74 283.9 346 41.0
Pp3c17_20460 Physcomitrium patens HOM05D006263 ORTHO05D007549 2.8e-69 266.5 346 39.6
SMO367G0539 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 5.1e-63 245.7 340 39.7
FAN16G0439 Fragaria x ananassa HOM05D006263 ORTHO05D007549 5.3e-60 235.7 207 58.5
RhsimUnG0048700 Rhododendron simsii HOM05D006263 ORTHO05D007549 4.2e-49 199.5 184 59.2
FAN18G1683 Fragaria x ananassa HOM05D000349 ORTHO05D007549 2.2e-45 187.2 204 50.0
Hma1.2p1_0376F.1_g139120 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 4.5e-43 179.5 166 55.4
Pp3c2_1350 Physcomitrium patens HOM05D006263 ORTHO05D007549 5.9e-43 179.1 260 37.3
FAN06G4136 Fragaria x ananassa HOM05D000349 ORTHO05D007549 8.5e-42 175.3 187 50.8
FAN18G1526 Fragaria x ananassa HOM05D000349 ORTHO05D007549 6.3e-37 159.1 179 49.7
FAN24G0044 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.7e-34 151.0 238 40.3
TPR.G18346 Trifolium pratense HOM05D006263 ORTHO05D007549 3.0e-26 123.6 81 67.9
SMO275G0019 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 1.9e-20 104.4 130 38.5
FAN03G3217 Fragaria x ananassa HOM05D002676 ORTHO05D003194 5.6e-17 92.8 60 70.0
FAN11G1140 Fragaria x ananassa HOM05D002676 ORTHO05D003194 5.6e-17 92.8 60 70.0
FAN22G0360 Fragaria x ananassa HOM05D002676 ORTHO05D003194 5.6e-17 92.8 60 70.0
FAN22G1437 Fragaria x ananassa HOM05D002676 ORTHO05D007549 4.7e-16 89.7 60 68.3
SMO367G0580 Selaginella moellendorffii HOM05D006263 ORTHO05D378923 1.4e-15 88.2 108 38.9
FAN08G1181 Fragaria x ananassa HOM05D003914 ORTHO05D001189 1.4e-12 78.2 53 66.0
FAN27G3525 Fragaria x ananassa HOM05D003914 ORTHO05D001189 1.4e-12 78.2 53 66.0
FAN25G1138 Fragaria x ananassa HOM05D012843 ORTHO05D017973 1.6e-11 74.7 78 52.6
FAN22G0951 Fragaria x ananassa HOM05D000005 ORTHO05D000294 2.1e-11 74.3 78 52.6
FAN15G0659 Fragaria x ananassa HOM05D006263 ORTHO05D007549 4.6e-11 73.2 94 42.6
FAN12G3135 Fragaria x ananassa HOM05D000005 ORTHO05D000294 6.0e-11 72.8 78 51.3
Phvul.004G082000 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 1.1e-09 68.6 62 50.0
FAN09G2057 Fragaria x ananassa HOM05D000005 ORTHO05D000294 7.3e-09 65.9 62 56.5
FAN22G2156 Fragaria x ananassa HOM05D002676 ORTHO05D003194 2.8e-08 63.9 65 50.8
SHI23126 Sapria himalayana HOM05D006263 ORTHO05D007549 6.2e-08 62.8 102 34.3


User provided reference genes

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