Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.1252 Acer truncatum HOM05D000003 ORTHO05D000022 4.7e-66 254.2 114 100.0
Atru.chr2.2708 Acer truncatum HOM05D000003 ORTHO05D000022 4.3e-35 151.4 119 57.1
Atru.chr12.2484 Acer truncatum HOM05D000003 ORTHO05D000022 5.6e-35 151.0 119 57.1
Atru.chr9.1443 Acer truncatum HOM05D000003 ORTHO05D000022 2.3e-33 145.6 118 55.9
Atru.chr7.259 Acer truncatum HOM05D000003 ORTHO05D000022 9.2e-30 133.7 117 52.1
Atru.chr12.663 Acer truncatum HOM05D000003 ORTHO05D000022 6.0e-29 131.0 117 52.1
Atru.chr7.1598 Acer truncatum HOM05D000003 ORTHO05D000022 2.3e-28 129.0 109 54.1
Atru.chr12.1675 Acer truncatum HOM05D000003 ORTHO05D000022 1.5e-27 126.3 119 47.1
Atru.chr12.2455 Acer truncatum HOM05D000003 ORTHO05D000022 1.9e-27 125.9 117 47.9
Prupe.4G161900 Prunus persica HOM05D000003 ORTHO05D000022 1.9e-27 125.9 119 47.1
Atru.chr1.776 Acer truncatum HOM05D000003 ORTHO05D000004 5.6e-27 124.4 119 46.2
Atru.chr3.3019 Acer truncatum HOM05D000003 ORTHO05D000022 5.6e-27 124.4 118 47.5
Atru.chr11.1243 Acer truncatum HOM05D000003 ORTHO05D000022 7.3e-27 124.0 117 48.7
Prupe.6G118100 Prunus persica HOM05D000003 ORTHO05D000022 7.3e-27 124.0 117 47.0
Prupe.6G201000 Prunus persica HOM05D000003 ORTHO05D000022 7.3e-27 124.0 117 47.0
Atru.chr4.1146 Acer truncatum HOM05D000003 ORTHO05D000022 2.1e-26 122.5 119 50.4
Atru.chr1.1336 Acer truncatum HOM05D000003 ORTHO05D000022 4.7e-26 121.3 117 46.2
Atru.chr7.713 Acer truncatum HOM05D000003 ORTHO05D000004 4.7e-26 121.3 119 50.4
Prupe.5G085900 Prunus persica HOM05D000003 ORTHO05D000022 8.1e-26 120.6 117 46.2
Atru.chr3.1505 Acer truncatum HOM05D000003 ORTHO05D000022 2.4e-25 119.0 119 49.6
Atru.chr10.713 Acer truncatum HOM05D000003 ORTHO05D000022 3.1e-25 118.6 117 47.0
Atru.chr11.1308 Acer truncatum HOM05D000003 ORTHO05D000022 3.1e-25 118.6 118 48.3
Atru.chr6.1397 Acer truncatum HOM05D000003 ORTHO05D000022 3.1e-25 118.6 121 45.5
Atru.chr1.3365 Acer truncatum HOM05D000003 ORTHO05D000004 5.2e-25 117.9 117 46.2
Atru.chr2.1419 Acer truncatum HOM05D000003 ORTHO05D000022 8.9e-25 117.1 117 44.4
Atru.chr4.1862 Acer truncatum HOM05D000003 ORTHO05D000022 1.5e-24 116.3 118 46.6
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-24 116.3 121 46.3
Atru.chr2.1762 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-24 115.5 120 45.8
Atru.chr4.29 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-24 115.5 120 46.7
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 5.8e-24 114.4 122 45.9
Atru.chr4.1844 Acer truncatum HOM05D000003 ORTHO05D000022 7.6e-24 114.0 120 45.8
Atru.chr6.1037 Acer truncatum HOM05D000003 ORTHO05D000022 9.9e-24 113.6 118 48.3
Atru.chr10.897 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-23 112.8 116 44.8
Atru.chr5.1030 Acer truncatum HOM05D000003 ORTHO05D000022 1.7e-23 112.8 117 45.3
Atru.chr2.284 Acer truncatum HOM05D000003 ORTHO05D000022 3.8e-23 111.7 117 44.4
Atru.chr1.2620 Acer truncatum HOM05D000003 ORTHO05D000004 2.4e-22 109.0 117 45.3
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 2.4e-22 109.0 119 42.9
Atru.chr1.1302 Acer truncatum HOM05D000003 ORTHO05D000004 3.2e-22 108.6 128 43.8
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 4.2e-22 108.2 120 44.2
Atru.chr10.394 Acer truncatum HOM05D000003 ORTHO05D000022 9.3e-22 107.1 121 43.8
Atru.chr3.2393 Acer truncatum HOM05D000003 ORTHO05D000022 9.3e-22 107.1 128 43.8
Atru.chr1.1701 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-21 106.7 121 44.6
Atru.chr13.1101 Acer truncatum HOM05D000003 ORTHO05D000022 1.6e-21 106.3 119 43.7
Atru.chr9.1513 Acer truncatum HOM05D000003 ORTHO05D000022 1.6e-21 106.3 117 43.6
Atru.chr11.757 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-21 105.9 119 44.5
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-21 105.9 119 43.7
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 3.5e-21 105.1 120 42.5
Atru.chr8.1687 Acer truncatum HOM05D000003 ORTHO05D000022 6.0e-21 104.4 115 43.5
Atru.chr2.669 Acer truncatum HOM05D000003 ORTHO05D000004 7.8e-21 104.0 122 41.0
Atru.chr1.1905 Acer truncatum HOM05D000003 ORTHO05D000022 1.0e-20 103.6 119 41.2
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 2.3e-20 102.4 120 42.5
Atru.chr10.890 Acer truncatum HOM05D000003 ORTHO05D000022 3.0e-20 102.1 108 44.4
Atru.chr11.1190 Acer truncatum HOM05D000003 ORTHO05D000022 8.7e-20 100.5 114 43.9
Atru.chr11.82 Acer truncatum HOM05D000003 ORTHO05D000022 7.3e-19 97.4 119 42.0
Atru.chr3.2067 Acer truncatum HOM05D000003 ORTHO05D000022 7.3e-19 97.4 119 39.5
Atru.chr5.2238 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-18 96.3 92 47.8
Atru.chr6.775 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-18 95.9 92 46.7
Atru.chr1.1484 Acer truncatum HOM05D000003 ORTHO05D000022 6.2e-18 94.4 119 40.3
Atru.chr10.557 Acer truncatum HOM05D000003 ORTHO05D000022 8.1e-18 94.0 83 53.0
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 1.4e-17 93.2 87 49.4
Atru.chr12.385 Acer truncatum HOM05D000003 ORTHO05D000022 1.8e-17 92.8 86 50.0
Atru.chr12.1755 Acer truncatum HOM05D000003 ORTHO05D000022 4.0e-17 91.7 109 44.0
Atru.chr5.2276 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-16 90.1 137 40.9
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 1.2e-16 90.1 117 40.2
Atru.chr3.2906 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-16 89.4 113 44.2
RcHm_v2.0_Chr6g0262791 Rosa chinensis HOM05D000003 ORTHO05D000022 2.0e-16 89.4 119 39.5
Atru.chr4.136 Acer truncatum HOM05D000003 ORTHO05D000022 4.5e-16 88.2 112 41.1
RcHm_v2.0_Chr2g0125461 Rosa chinensis HOM05D000003 ORTHO05D000022 9.9e-16 87.0 117 35.9
Atru.chr11.860 Acer truncatum HOM05D000003 ORTHO05D000022 8.4e-15 84.0 85 49.4
Atru.chr6.2380 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-14 83.2 96 40.6
Atru.chr4.661 Acer truncatum HOM05D000003 ORTHO05D000022 2.4e-14 82.4 108 41.7
RcHm_v2.0_Chr2g0146161 Rosa chinensis HOM05D000003 ORTHO05D000022 4.2e-14 81.6 119 37.8
Atru.chr2.2101 Acer truncatum HOM05D000003 ORTHO05D000022 9.3e-14 80.5 85 45.9
RcHm_v2.0_Chr2g0132921 Rosa chinensis HOM05D000003 ORTHO05D000022 2.1e-13 79.3 117 36.8
Atru.chr1.1754 Acer truncatum HOM05D000003 ORTHO05D000022 2.7e-13 79.0 83 48.2
RcHm_v2.0_Chr5g0053531 Rosa chinensis HOM05D000003 ORTHO05D000004 3.5e-13 78.6 117 34.2
Atru.chr2.53 Acer truncatum HOM05D000003 ORTHO05D000022 4.6e-13 78.2 89 41.6
FvH4_3g27901 Fragaria vesca HOM05D000003 ORTHO05D000022 4.6e-13 78.2 117 34.2
Atru.chr12.1989 Acer truncatum HOM05D000003 ORTHO05D000022 6.0e-13 77.8 86 45.3
Atru.chr3.2744 Acer truncatum HOM05D000003 ORTHO05D000022 1.0e-12 77.0 77 49.4
FvH4_3g33091 Fragaria vesca HOM05D000003 ORTHO05D000022 1.0e-12 77.0 111 37.8
Atru.chr1.1759 Acer truncatum HOM05D000003 ORTHO05D000022 3.0e-12 75.5 86 46.5
Atru.chr7.949 Acer truncatum HOM05D000003 ORTHO05D000022 3.0e-12 75.5 70 48.6
FvH4_5g27995 Fragaria vesca HOM05D000003 ORTHO05D000022 3.0e-12 75.5 117 34.2
Atru.chr8.829 Acer truncatum HOM05D000003 ORTHO05D000022 6.7e-12 74.3 86 43.0
Atru.chr1.2428 Acer truncatum HOM05D000003 ORTHO05D000004 8.7e-12 73.9 88 44.3
Atru.chr9.1441 Acer truncatum HOM05D000003 ORTHO05D000022 8.7e-12 73.9 66 54.5
Atru.chr3.1522 Acer truncatum HOM05D000003 ORTHO05D000006 1.5e-11 73.2 60 58.3
Prupe.1G291700 Prunus persica HOM05D000061 ORTHO05D000050 1.5e-11 73.2 87 44.8
Prupe.6G123500 Prunus persica HOM05D000003 ORTHO05D000022 1.5e-11 73.2 115 34.8
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 1.5e-11 73.2 119 32.8
RcHm_v2.0_Chr4g0426941 Rosa chinensis HOM05D000003 ORTHO05D000022 1.5e-11 73.2 117 34.2
Atru.chr9.658 Acer truncatum HOM05D000003 ORTHO05D000022 2.5e-11 72.4 67 49.3
FvH4_3g30492 Fragaria vesca HOM05D000003 ORTHO05D000022 2.5e-11 72.4 120 35.0
RcHm_v2.0_Chr7g0220091 Rosa chinensis HOM05D000003 ORTHO05D000022 2.5e-11 72.4 115 35.7
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.3e-11 71.6 124 33.1
Atru.chr10.427 Acer truncatum HOM05D000003 ORTHO05D000022 5.6e-11 71.2 97 38.1
Atru.chr3.2200 Acer truncatum HOM05D000003 ORTHO05D000022 9.6e-11 70.5 79 45.6
Atru.chr8.1057 Acer truncatum HOM05D000003 ORTHO05D000022 9.6e-11 70.5 67 49.3
SGA_v2.0_scaffold147G36377 Striga asiatica HOM05D000003 ORTHO05D000022 9.6e-11 70.5 119 36.1
Atru.chr13.1154 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-10 70.1 72 40.3
Atru.chr1.275 Acer truncatum HOM05D030068 ORTHO05D000022 1.6e-10 69.7 56 57.1
Atru.chr8.1561 Acer truncatum HOM05D000003 ORTHO05D000022 1.6e-10 69.7 90 41.1
Atru.chr2.2394 Acer truncatum HOM05D000003 ORTHO05D000022 2.1e-10 69.3 67 49.3
Atru.chr13.1905 Acer truncatum HOM05D000003 ORTHO05D000004 4.8e-10 68.2 87 39.1
Atru.chr8.1099 Acer truncatum HOM05D000003 ORTHO05D000022 4.8e-10 68.2 92 40.2
Atru.chr8.699 Acer truncatum HOM05D000003 ORTHO05D000022 4.8e-10 68.2 68 44.1
Manes.06G020101 Manihot esculenta HOM05D000003 ORTHO05D000004 4.8e-10 68.2 123 35.8
Atru.chr13.1498 Acer truncatum HOM05D000003 ORTHO05D000022 8.1e-10 67.4 67 49.3
Atru.chr3.2932 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-09 67.0 110 32.7
Atru.chr4.1178 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-09 66.6 108 38.0
Atru.chr9.1525 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-09 66.6 87 40.2
Atru.chr11.1461 Acer truncatum HOM05D000003 ORTHO05D000022 1.8e-09 66.2 59 42.4
Atru.chr2.3435 Acer truncatum HOM05D000003 ORTHO05D000022 2.4e-09 65.9 67 44.8
Atru.chr8.749 Acer truncatum HOM05D000003 ORTHO05D000004 5.3e-09 64.7 95 38.9
Atru.chr2.971 Acer truncatum HOM05D000003 ORTHO05D000022 9.0e-09 63.9 69 50.7
Atru.chr7.952 Acer truncatum HOM05D000003 ORTHO05D000004 9.0e-09 63.9 95 36.8
Atru.chr3.2801 Acer truncatum HOM05D000016 ORTHO05D000109 1.2e-08 63.5 68 42.6
Atru.chr4.827 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-08 63.5 96 35.4
AT5G42905 Arabidopsis thaliana HOM05D000003 ORTHO05D000022 1.2e-08 63.5 120 30.8
CARHR213150 Cardamine hirsuta HOM05D000003 ORTHO05D000022 1.2e-08 63.5 117 29.9
RcHm_v2.0_Chr4g0411801 Rosa chinensis HOM05D000003 ORTHO05D000022 2.0e-08 62.8 82 39.0
Sabra04G0049100 Salix brachista HOM05D000003 ORTHO05D000007 2.0e-08 62.8 75 45.3
Sabra08G0134900 Salix brachista HOM05D000003 ORTHO05D000006 2.0e-08 62.8 75 45.3
Sabra09G0015300 Salix brachista HOM05D000003 ORTHO05D000006 2.0e-08 62.8 75 45.3
Thecc.06G025800 Theobroma cacao HOM05D000003 ORTHO05D000022 2.0e-08 62.8 126 31.0
FvH4_2g15861 Fragaria vesca HOM05D000003 ORTHO05D000022 2.6e-08 62.4 67 44.8
Manes.07G103102 Manihot esculenta HOM05D000003 ORTHO05D000004 2.6e-08 62.4 122 28.7
Atru.chr3.1552 Acer truncatum HOM05D000003 ORTHO05D000022 4.5e-08 61.6 81 40.7
Atru.chr4.1988 Acer truncatum HOM05D000003 ORTHO05D000004 4.5e-08 61.6 81 40.7
TWI38G0333 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.5e-08 61.6 124 33.1
FvH4_2g12671 Fragaria vesca HOM05D000003 ORTHO05D000022 7.6e-08 60.8 110 31.8
RcHm_v2.0_Chr7g0181271 Rosa chinensis HOM05D000003 ORTHO05D000022 9.9e-08 60.5 67 41.8
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 1.3e-07 60.1 122 32.0
COL.COLO4_33037 Corchorus olitorius HOM05D000155 ORTHO05D000022 1.7e-07 59.7 75 37.3
Lj3g0014530 Lotus japonicus HOM05D000003 ORTHO05D000022 2.2e-07 59.3 122 30.3
CARHR105380 Cardamine hirsuta HOM05D000003 ORTHO05D000022 3.8e-07 58.5 120 32.5
FvH4_2g12061 Fragaria vesca HOM05D000003 ORTHO05D000022 3.8e-07 58.5 98 31.6
CARHR054120 Cardamine hirsuta HOM05D000003 ORTHO05D000022 4.9e-07 58.2 112 32.1
Sabra07G0074300 Salix brachista HOM05D000609 ORTHO05D000462 4.9e-07 58.2 75 44.0
AUR62019983 Chenopodium quinoa HOM05D000577 ORTHO05D001093 6.4e-07 57.8 129 30.2
Atru.chr7.170 Acer truncatum HOM05D000003 ORTHO05D000022 8.4e-07 57.4 67 40.3
Sabra16G0000700 Salix brachista HOM05D060723 ORTHO05D000022 8.4e-07 57.4 92 39.1
arahy.Tifrunner.gnm1.ann1.S8SYMB Arachis hypogaea HOM05D040955 ORTHO05D038905 3.2e-06 55.5 80 33.8
arahy.Tifrunner.gnm1.ann1.YVVB9L Arachis hypogaea HOM05D040955 ORTHO05D038905 3.2e-06 55.5 80 33.8
CARHR111550 Cardamine hirsuta HOM05D000003 ORTHO05D000022 3.2e-06 55.5 97 33.0
Atru.chr5.1023 Acer truncatum HOM05D000003 ORTHO05D000022 4.2e-06 55.1 52 51.9
Atru.chr5.2509 Acer truncatum HOM05D000003 ORTHO05D000022 4.2e-06 55.1 57 50.9
Ciclev10021474m.g Citrus clementina HOM05D000003 ORTHO05D000022 4.2e-06 55.1 66 37.9
Cc00_g03760 Coffea canephora HOM05D000155 ORTHO05D000022 4.2e-06 55.1 136 30.1
RcHm_v2.0_Chr2g0127141 Rosa chinensis HOM05D000003 ORTHO05D000022 4.2e-06 55.1 78 38.5
QL01p007248 Quercus lobata HOM05D000003 ORTHO05D000022 5.5e-06 54.7 116 29.3
QL02p058259 Quercus lobata HOM05D000155 ORTHO05D000022 5.5e-06 54.7 116 25.9
QL93p0100_0664 Quercus lobata HOM05D000155 ORTHO05D000022 5.5e-06 54.7 116 25.9
CARHR035340 Cardamine hirsuta HOM05D000003 ORTHO05D000022 9.3e-06 53.9 116 32.8


User provided reference genes

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