Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.1158 Acer truncatum HOM05D002444 ORTHO05D009235 8.7e-76 288.1 140 100.0
Atru.chr2.1176 Acer truncatum HOM05D002444 ORTHO05D009235 8.7e-76 288.1 140 100.0
Gorai.005G136500 Gossypium raimondii HOM05D002444 ORTHO05D009235 3.7e-42 176.4 139 59.7
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 2.1e-37 160.6 119 63.9
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 1.4e-36 157.9 117 64.1
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 1.7e-34 151.0 125 56.8
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 2.8e-34 150.2 138 51.4
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 2.8e-34 150.2 138 51.4
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 4.8e-34 149.4 138 52.2
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 4.8e-34 149.4 138 52.2
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 5.3e-33 146.0 122 57.4
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 5.3e-33 146.0 115 59.1
Gohir.D02G117100 Gossypium hirsutum HOM05D002444 ORTHO05D009235 2.0e-32 144.1 120 55.8
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 3.2e-30 136.7 104 61.5
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 7.2e-30 135.6 121 51.2
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 7.2e-30 135.6 119 51.3
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 1.2e-29 134.8 119 52.9
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 1.6e-29 134.4 119 56.3
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 7.9e-29 132.1 119 52.1
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 3.9e-28 129.8 121 51.2
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 6.7e-28 129.0 138 48.6
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 7.4e-27 125.6 95 63.2
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 1.1e-25 121.7 118 50.8
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 1.1e-25 121.7 122 49.2
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 2.4e-25 120.6 115 52.2
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 4.1e-25 119.8 110 53.6
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 5.3e-25 119.4 123 46.3
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 2.0e-24 117.5 104 53.8
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 2.6e-24 117.1 117 50.4
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 1.7e-23 114.4 118 48.3
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.7e-23 114.4 118 48.3
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 5.0e-23 112.8 117 48.7
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 8.5e-23 112.1 100 55.0
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 3.2e-22 110.2 118 47.5
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 4.2e-22 109.8 85 62.4
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 5.5e-22 109.4 118 46.6
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 5.5e-22 109.4 112 48.2
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 5.5e-22 109.4 98 53.1
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 1.2e-21 108.2 109 46.8
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 1.4e-20 104.8 107 48.6
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 8.8e-20 102.1 93 51.6
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 8.8e-20 102.1 109 47.7
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 1.5e-19 101.3 86 54.7
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 2.0e-19 100.9 91 54.9
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 1.3e-18 98.2 123 43.9
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 1.8e-17 94.4 104 45.2
Ca_22522_v3 Cicer arietinum L. HOM05D002444 ORTHO05D009235 2.4e-17 94.0 106 42.5
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 2.4e-17 94.0 104 45.2
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 3.1e-17 93.6 104 44.2
Phvul.003G282300 Phaseolus vulgaris HOM05D002444 ORTHO05D009235 3.1e-17 93.6 121 42.1
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 3.5e-16 90.1 122 41.0
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 5.9e-16 89.4 117 40.2
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 7.7e-16 89.0 104 43.3
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 1.3e-15 88.2 77 57.1
Oeu036988.1 Olea europaea HOM05D002444 ORTHO05D009235 1.7e-15 87.8 139 38.1
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 6.5e-15 85.9 104 37.5
ClCG05G006410 Citrullus lanatus HOM05D002444 ORTHO05D009235 1.9e-14 84.3 80 51.2
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 7.2e-14 82.4 79 48.1
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 1.2e-13 81.6 86 48.8
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 1.0e-12 78.6 89 43.8
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 1.4e-12 78.2 62 59.7
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 1.5e-11 74.7 80 46.2
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 7.5e-11 72.4 78 42.3
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 2.2e-10 70.9 105 30.5
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 6.3e-10 69.3 56 55.4
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 8.3e-10 68.9 104 39.4
Gorai.013G105500 Gossypium raimondii HOM05D002444 ORTHO05D009235 1.2e-08 65.1 40 72.5
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 2.0e-08 64.3 68 48.5
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 3.5e-08 63.5 66 48.5
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 2.2e-07 60.8 68 45.6


User provided reference genes

Program Settings