Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.1042 Acer truncatum HOM05D001899 ORTHO05D001858 1.1e-65 253.1 123 100.0
Atru.chr2.1041 Acer truncatum HOM05D001899 ORTHO05D001858 4.8e-24 114.8 117 51.3
Atru.chr2.2777 Acer truncatum HOM05D001899 ORTHO05D001858 5.3e-23 111.3 119 51.3
Atru.chr2.1036 Acer truncatum HOM05D001899 ORTHO05D001858 1.2e-22 110.2 101 53.5
CSS0047886 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 3.8e-21 105.1 117 48.7
Dinv18978 Davidia involucrata HOM05D001899 ORTHO05D001858 5.0e-21 104.8 123 48.0
Atru.chr2.1019 Acer truncatum HOM05D001899 ORTHO05D001858 6.5e-21 104.4 53 98.1
PGR031G3911 Punica granatum HOM05D001899 ORTHO05D001858 6.5e-21 104.4 129 44.2
TWI38G0922 Tripterygium wilfordii HOM05D001899 ORTHO05D001858 3.2e-20 102.1 138 44.9
Actinidia11818 Actinidia chinensis HOM05D001899 ORTHO05D001858 4.6e-19 98.2 119 43.7
Cpa.g.sc74.94 Carica papaya HOM05D001899 ORTHO05D001858 1.4e-18 96.7 126 46.8
QL03p012061 Quercus lobata HOM05D001899 ORTHO05D001858 1.4e-18 96.7 124 46.0
TWI60G1023 Tripterygium wilfordii HOM05D001899 ORTHO05D001858 1.4e-18 96.7 149 41.6
TWI32G1137 Tripterygium wilfordii HOM05D001899 ORTHO05D001858 1.8e-18 96.3 145 40.7
Haze_06607 Corylus avellana HOM05D001899 ORTHO05D001858 6.7e-18 94.4 138 40.6
Cfa021992 Carpinus fangiana HOM05D001899 ORTHO05D001858 8.8e-18 94.0 128 42.2
Eucgr.D02107 Eucalyptus grandis HOM05D001899 ORTHO05D001858 8.8e-18 94.0 126 42.1
Lj2P373T19 Lonicera japonica HOM05D001899 ORTHO05D001858 1.5e-17 93.2 124 43.5
Prupe.7G078100 Prunus persica HOM05D001899 ORTHO05D001858 1.9e-17 92.8 127 42.5
CSS0026126 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 3.3e-17 92.0 124 43.5
QL10p057408 Quercus lobata HOM05D001899 ORTHO05D001858 3.3e-17 92.0 143 41.3
CSS0011957 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 4.3e-17 91.7 124 43.5
QL10p057742 Quercus lobata HOM05D001899 ORTHO05D001858 9.7e-17 90.5 146 40.4
QL05p080564 Quercus lobata HOM05D001899 ORTHO05D001858 2.2e-16 89.4 132 39.4
Hma1.2p1_0005F.1_g004450 Hydrangea macrophylla HOM05D001899 ORTHO05D001858 2.8e-16 89.0 132 37.9
Cc00_g11790 Coffea canephora HOM05D001899 ORTHO05D001858 6.3e-16 87.8 128 38.3
Eucgr.L03043 Eucalyptus grandis HOM05D001899 ORTHO05D001858 6.3e-16 87.8 131 40.5
Duzib205G1384 Durio zibethinus HOM05D001899 ORTHO05D001858 8.2e-16 87.4 142 38.0
Os01g0799000 Oryza sativa ssp. japonica HOM05D001899 ORTHO05D001858 1.1e-15 87.0 130 36.9
Cfa000321 Carpinus fangiana HOM05D001899 ORTHO05D001858 1.4e-15 86.7 137 39.4
QL05p080559 Quercus lobata HOM05D001899 ORTHO05D001858 1.8e-15 86.3 126 38.9
Duzib084G0236 Durio zibethinus HOM05D001899 ORTHO05D001858 5.3e-15 84.7 119 40.3
QL03p011987 Quercus lobata HOM05D001899 ORTHO05D001858 5.3e-15 84.7 109 45.0
Haze_06610 Corylus avellana HOM05D001899 ORTHO05D001858 6.9e-15 84.3 160 33.8
Atru.chr2.1017 Acer truncatum HOM05D001899 ORTHO05D001858 9.1e-15 84.0 117 41.9
MD10G1305300 Malus domestica HOM05D001899 ORTHO05D001858 9.1e-15 84.0 127 42.5
MD12G1056400 Malus domestica HOM05D001899 ORTHO05D001858 1.2e-14 83.6 142 37.3
Prupe.7G078600 Prunus persica HOM05D001899 ORTHO05D001858 2.0e-14 82.8 156 37.2
Lju124C32T3 Lonicera japonica HOM05D001899 ORTHO05D001858 2.6e-14 82.4 122 36.1
Atru.chr2.2543 Acer truncatum HOM05D001899 ORTHO05D001858 4.5e-14 81.6 119 42.9
CANSAT56G3575 Cannabis sativa HOM05D001899 ORTHO05D001858 5.9e-14 81.3 131 38.2
CSS0021841 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 7.7e-14 80.9 116 41.4
Prupe.4G034300 Prunus persica HOM05D001899 ORTHO05D001858 1.0e-13 80.5 128 40.6
RcHm_v2.0_Chr3g0479511 Rosa chinensis HOM05D001899 ORTHO05D001858 1.3e-13 80.1 134 37.3
Actinidia11822 Actinidia chinensis HOM05D001899 ORTHO05D001858 1.7e-13 79.7 146 34.9
AL8G13160 Arabidopsis lyrata HOM05D001899 ORTHO05D001858 1.7e-13 79.7 127 36.2
CSS0033155 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 1.7e-13 79.7 117 41.9
DCAR_009113 Daucus carota HOM05D001899 ORTHO05D001858 5.0e-13 78.2 124 35.5
AT5G45520 Arabidopsis thaliana HOM05D001899 ORTHO05D001858 6.5e-13 77.8 127 36.2
Cfa000329 Carpinus fangiana HOM05D001899 ORTHO05D001858 6.5e-13 77.8 130 38.5
CSS0012574 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 8.5e-13 77.4 119 40.3
RcHm_v2.0_Chr5g0005761 Rosa chinensis HOM05D001899 ORTHO05D001858 8.5e-13 77.4 127 37.8
Sabra19G0048600 Salix brachista HOM05D001899 ORTHO05D001858 8.5e-13 77.4 125 39.2
CsaV3_5G004530 Cucumis sativus L. HOM05D001899 ORTHO05D001858 1.4e-12 76.6 145 35.2
FAN05G3856 Fragaria x ananassa HOM05D001899 ORTHO05D001858 1.4e-12 76.6 129 35.7
MELO3C005508.2 Cucumis melo HOM05D001899 ORTHO05D001858 1.9e-12 76.3 145 32.4
AL8G13180 Arabidopsis lyrata HOM05D001899 ORTHO05D001858 2.5e-12 75.9 128 37.5
CiPaw.11G083200 Carya illinoinensis HOM05D001899 ORTHO05D001858 3.2e-12 75.5 136 39.0
SGA_v2.0_scaffold7G03908 Striga asiatica HOM05D001899 ORTHO05D001858 3.2e-12 75.5 130 33.8
THA.LOC104810918 Tarenaya hassleriana HOM05D001899 ORTHO05D001858 3.2e-12 75.5 127 37.8
Ciclev10030735m.g Citrus clementina HOM05D001899 ORTHO05D001858 4.2e-12 75.1 201 29.9
Carub.0008s0250 Capsella rubella HOM05D001899 ORTHO05D001858 5.5e-12 74.7 122 36.1
FvH4_6g22160 Fragaria vesca HOM05D001899 ORTHO05D001858 5.5e-12 74.7 126 35.7
Atru.chr2.3734 Acer truncatum HOM05D001899 ORTHO05D001858 7.2e-12 74.3 120 40.8
Haze_06603 Corylus avellana HOM05D000432 ORTHO05D001858 7.2e-12 74.3 131 38.9
Aqoxy1G04207 Aquilegia oxysepala HOM05D001899 ORTHO05D001858 9.4e-12 73.9 123 33.3
FAN02G1023 Fragaria x ananassa HOM05D001899 ORTHO05D001858 9.4e-12 73.9 132 34.8
Thecc.03G312500 Theobroma cacao HOM05D001899 ORTHO05D001858 9.4e-12 73.9 187 29.4
Cfa000331 Carpinus fangiana HOM05D001899 ORTHO05D001858 1.2e-11 73.6 134 36.6
ClCG01G004370 Citrullus lanatus HOM05D001899 ORTHO05D001858 1.2e-11 73.6 147 36.1
FAN14G0941 Fragaria x ananassa HOM05D001899 ORTHO05D001858 1.2e-11 73.6 127 36.2
QL05p080604 Quercus lobata HOM05D001899 ORTHO05D001858 1.2e-11 73.6 127 35.4
FAN09G1114 Fragaria x ananassa HOM05D001899 ORTHO05D001858 1.6e-11 73.2 124 34.7
DCAR_013526 Daucus carota HOM05D001899 ORTHO05D001858 2.7e-11 72.4 122 37.7
Potri.011G040700 Populus trichocarpa HOM05D001899 ORTHO05D001858 2.7e-11 72.4 143 34.3
BcaB07g30441 Brassica carinata HOM05D001899 ORTHO05D001858 3.6e-11 72.0 146 32.2
Hma1.2p1_1515F.1_g288230 Hydrangea macrophylla HOM05D001899 ORTHO05D001858 3.6e-11 72.0 122 38.5
QL05p080645 Quercus lobata HOM05D001899 ORTHO05D001858 3.6e-11 72.0 130 36.2
QL05p080750 Quercus lobata HOM05D001899 ORTHO05D001858 3.6e-11 72.0 132 32.6
PGR044G0582 Punica granatum HOM05D001899 ORTHO05D001858 6.1e-11 71.2 112 40.2
Sp2g10420 Schrenkiella parvula HOM05D001899 ORTHO05D001858 6.1e-11 71.2 122 36.9
BcaC06g34428 Brassica carinata HOM05D001899 ORTHO05D001858 7.9e-11 70.9 128 33.6
C07p28610 Brassica napus HOM05D001899 ORTHO05D001858 7.9e-11 70.9 128 33.6
BolC7t43399H Brassica oleracea HOM05D001899 ORTHO05D001858 7.9e-11 70.9 128 33.6
BcaC03g16770 Brassica carinata HOM05D001899 ORTHO05D001858 1.0e-10 70.5 145 31.7
CSS0026346 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 1.0e-10 70.5 92 39.1
BraA06t27530Z Brassica rapa HOM05D001899 ORTHO05D001858 1.4e-10 70.1 129 34.1
Cfa000318 Carpinus fangiana HOM05D001899 ORTHO05D001858 1.4e-10 70.1 173 30.1
GSVIVG01015778001 Vitis vinifera HOM05D001899 ORTHO05D001858 1.4e-10 70.1 108 38.0
FAN05G3399 Fragaria x ananassa HOM05D001899 ORTHO05D001858 1.8e-10 69.7 112 36.6
Potri.019G036900 Populus trichocarpa HOM05D001899 ORTHO05D001858 1.8e-10 69.7 121 38.0
C02p46420 Brassica napus HOM05D001899 ORTHO05D001858 2.3e-10 69.3 144 31.9
CsaV3_5G004560 Cucumis sativus L. HOM05D001899 ORTHO05D001858 2.3e-10 69.3 147 34.0
Lj2P372T15 Lonicera japonica HOM05D001899 ORTHO05D001858 2.3e-10 69.3 83 41.0
THA.LOC104798669 Tarenaya hassleriana HOM05D001899 ORTHO05D001858 2.3e-10 69.3 123 35.0
THA.LOC104807149 Tarenaya hassleriana HOM05D001899 ORTHO05D001858 2.3e-10 69.3 123 35.0
A02p29250 Brassica napus HOM05D001899 ORTHO05D001858 3.0e-10 68.9 144 31.9
BraA02t07954Z Brassica rapa HOM05D001899 ORTHO05D001858 3.0e-10 68.9 144 31.9
COL.COLO4_16866 Corchorus olitorius HOM05D001899 ORTHO05D001858 3.0e-10 68.9 167 28.1
Thhalv10000749m.g Eutrema salsugineum HOM05D001899 ORTHO05D001858 3.0e-10 68.9 123 39.0
BcaC06g31547 Brassica carinata HOM05D001899 ORTHO05D001858 3.9e-10 68.6 143 31.5
Gohir.A12G203700 Gossypium hirsutum HOM05D001899 ORTHO05D001858 3.9e-10 68.6 175 26.3
AL8G13350 Arabidopsis lyrata HOM05D001899 ORTHO05D001858 6.7e-10 67.8 113 31.9
BcaC03g16765 Brassica carinata HOM05D001899 ORTHO05D001858 6.7e-10 67.8 143 32.2
BcaC03g16766 Brassica carinata HOM05D001899 ORTHO05D001858 6.7e-10 67.8 144 31.9
BolC2t10694H Brassica oleracea HOM05D001899 ORTHO05D001858 6.7e-10 67.8 144 31.9
BraA06t27532Z Brassica rapa HOM05D001899 ORTHO05D001858 6.7e-10 67.8 143 31.5
Atru.chr2.2530 Acer truncatum HOM05D001899 ORTHO05D001858 8.8e-10 67.4 122 37.7
Aa31LG9G7500 Aethionema arabicum HOM05D001899 ORTHO05D001858 8.8e-10 67.4 128 32.0
A06p46580 Brassica napus HOM05D001899 ORTHO05D001858 8.8e-10 67.4 140 32.1
COL.COLO4_37093 Corchorus olitorius HOM05D001899 ORTHO05D001858 8.8e-10 67.4 164 27.4
Hma1.2p1_0565F.1_g179700 Hydrangea macrophylla HOM05D001899 ORTHO05D001858 1.1e-09 67.0 111 33.3
BcaC06g34430 Brassica carinata HOM05D001899 ORTHO05D001858 1.5e-09 66.6 145 31.7
C07p28570 Brassica napus HOM05D001899 ORTHO05D001858 1.5e-09 66.6 145 31.7
CARHR176520 Cardamine hirsuta HOM05D001899 ORTHO05D001858 1.5e-09 66.6 143 30.8
Thhalv10000788m.g Eutrema salsugineum HOM05D001899 ORTHO05D001858 1.5e-09 66.6 142 32.4
FAN09G0419 Fragaria x ananassa HOM05D001899 ORTHO05D001858 1.5e-09 66.6 110 37.3
FvH4_6g29201 Fragaria vesca HOM05D001899 ORTHO05D001858 2.0e-09 66.2 110 37.3
FAN14G4804 Fragaria x ananassa HOM05D001899 ORTHO05D001858 2.0e-09 66.2 110 37.3
Nn7g37685 Nelumbo nucifera HOM05D001899 ORTHO05D001858 2.0e-09 66.2 140 35.7
DCAR_021587 Daucus carota HOM05D001899 ORTHO05D001858 2.6e-09 65.9 113 33.6
Dinv40462 Davidia involucrata HOM05D001899 ORTHO05D001858 2.6e-09 65.9 86 43.0
Eucgr.D02106 Eucalyptus grandis HOM05D001899 ORTHO05D001858 2.6e-09 65.9 125 32.0
CAN.G641.63 Capsicum annuum HOM05D001899 ORTHO05D001858 4.4e-09 65.1 146 28.1
CARHR176530 Cardamine hirsuta HOM05D001899 ORTHO05D001858 4.4e-09 65.1 146 29.5
BolC7t43395H Brassica oleracea HOM05D001899 ORTHO05D001858 5.7e-09 64.7 143 30.8
CARHR176600 Cardamine hirsuta HOM05D001899 ORTHO05D001858 5.7e-09 64.7 112 30.4
Thecc.03G316200 Theobroma cacao HOM05D001899 ORTHO05D001858 5.7e-09 64.7 178 26.4
CiPaw.11G083300 Carya illinoinensis HOM05D001899 ORTHO05D001858 7.4e-09 64.3 146 31.5
Cc03_g14670 Coffea canephora HOM05D001899 ORTHO05D001858 9.7e-09 63.9 122 32.8
COL.COLO4_16910 Corchorus olitorius HOM05D001899 ORTHO05D001858 9.7e-09 63.9 166 26.5
Dinv09330 Davidia involucrata HOM05D001899 ORTHO05D001858 9.7e-09 63.9 120 35.0
Hma1.2p1_3608F.1_g337030 Hydrangea macrophylla HOM05D001899 ORTHO05D001858 9.7e-09 63.9 95 36.8
PGR042G3667 Punica granatum HOM05D001899 ORTHO05D001858 9.7e-09 63.9 105 38.1
Aqoxy4G00976 Aquilegia oxysepala HOM05D001899 ORTHO05D001858 1.3e-08 63.5 122 36.1
AL8G13220 Arabidopsis lyrata HOM05D001899 ORTHO05D001858 1.3e-08 63.5 141 31.2
BcaC06g31548 Brassica carinata HOM05D001899 ORTHO05D001858 1.3e-08 63.5 139 30.9
Carub.0008s0252 Capsella rubella HOM05D001899 ORTHO05D001858 1.3e-08 63.5 126 32.5
Carub.0008s0261 Capsella rubella HOM05D001899 ORTHO05D001858 1.3e-08 63.5 127 26.0
SalBow8G4329 Salvia bowleyana HOM05D001899 ORTHO05D001858 1.7e-08 63.2 174 27.6
A06p46560 Brassica napus HOM05D001899 ORTHO05D001858 3.7e-08 62.0 128 32.8
BolC2t10693H Brassica oleracea HOM05D001899 ORTHO05D001858 3.7e-08 62.0 101 34.7
AT5G45500 Arabidopsis thaliana HOM05D001899 ORTHO05D001858 6.3e-08 61.2 141 29.8
Ciclev10025017m.g Citrus clementina HOM05D001899 ORTHO05D001858 6.3e-08 61.2 119 37.0
QL12p010649 Quercus lobata HOM05D001899 ORTHO05D001858 8.2e-08 60.8 183 31.1
PGR044G0401 Punica granatum HOM05D001899 ORTHO05D001858 1.1e-07 60.5 127 32.3
Lj6g0003184 Lotus japonicus HOM05D001899 ORTHO05D001858 1.8e-07 59.7 126 31.0
RcHm_v2.0_Chr2g0112821 Rosa chinensis HOM05D001899 ORTHO05D001858 1.8e-07 59.7 123 29.3
Rhsim07G0040900 Rhododendron simsii HOM05D001899 ORTHO05D001858 2.4e-07 59.3 129 32.6
Cc03_g14570 Coffea canephora HOM05D001899 ORTHO05D001858 3.1e-07 58.9 106 34.0
CARHR176500 Cardamine hirsuta HOM05D001899 ORTHO05D001858 4.1e-07 58.5 78 41.0
MSTRG.15943 Avicennia marina HOM05D001899 ORTHO05D001858 7.0e-07 57.8 61 45.9
CAN.G641.77 Capsicum annuum HOM05D001899 ORTHO05D001858 1.2e-06 57.0 146 26.0
Cfa000324 Carpinus fangiana HOM05D001899 ORTHO05D001858 1.2e-06 57.0 113 37.2
Oeu014266.1 Olea europaea HOM05D001899 ORTHO05D001858 1.5e-06 56.6 103 35.0
Prupe.3G175600 Prunus persica HOM05D001899 ORTHO05D001858 1.5e-06 56.6 100 34.0
Prupe.3G176100 Prunus persica HOM05D001899 ORTHO05D001858 1.5e-06 56.6 100 34.0
QL12p010054 Quercus lobata HOM05D001899 ORTHO05D001858 1.5e-06 56.6 145 32.4
RcHm_v2.0_Chr2g0111461 Rosa chinensis HOM05D001899 ORTHO05D001858 1.5e-06 56.6 129 31.8
Nn1g03842 Nelumbo nucifera HOM05D001899 ORTHO05D001858 2.0e-06 56.2 117 35.9
Nn7g37244 Nelumbo nucifera HOM05D001899 ORTHO05D001858 2.6e-06 55.8 126 29.4
BcaNung04015 Brassica carinata HOM05D001899 ORTHO05D001858 4.5e-06 55.1 139 27.3
Nn7g37248 Nelumbo nucifera HOM05D001899 ORTHO05D001858 4.5e-06 55.1 126 29.4
Dinv43420 Davidia involucrata HOM05D001899 ORTHO05D001858 5.9e-06 54.7 101 35.6
Eucgr.J01169 Eucalyptus grandis HOM05D001899 ORTHO05D001858 7.7e-06 54.3 135 28.1


User provided reference genes

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