Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.104 Acer truncatum HOM05D000143 ORTHO05D000072 6.0e-62 240.7 127 100.0
Atru.chr5.2969 Acer truncatum HOM05D000143 ORTHO05D000072 1.0e-37 160.2 135 68.9
Rhsim01G0285400 Rhododendron simsii HOM05D000143 ORTHO05D000072 1.8e-26 122.9 97 66.0
Ciclev10003933m.g Citrus clementina HOM05D000143 ORTHO05D000072 9.3e-23 110.5 166 42.2
Duzib177G0193 Durio zibethinus HOM05D000143 ORTHO05D000072 1.8e-21 106.3 138 47.1
Gohir.A13G174800 Gossypium hirsutum HOM05D000143 ORTHO05D000072 2.3e-21 105.9 147 42.2
Gorai.013G206000 Gossypium raimondii HOM05D000143 ORTHO05D000072 6.7e-21 104.4 147 42.2
Actinidia24818 Actinidia chinensis HOM05D000143 ORTHO05D000072 8.7e-21 104.0 134 46.3
Gohir.D13G180600 Gossypium hirsutum HOM05D000143 ORTHO05D000072 8.7e-21 104.0 147 42.2
Thecc.05G314800 Theobroma cacao HOM05D000143 ORTHO05D000072 2.5e-20 102.4 145 44.1
Cpa.g.sc48.105 Carica papaya HOM05D000143 ORTHO05D000072 4.3e-20 101.7 147 42.2
COL.COLO4_10542 Corchorus olitorius HOM05D000143 ORTHO05D000072 7.4e-20 100.9 147 43.5
Cfa006643 Carpinus fangiana HOM05D000143 ORTHO05D000072 1.3e-19 100.1 142 43.7
QL03p019834 Quercus lobata HOM05D000143 ORTHO05D000072 1.3e-19 100.1 141 44.0
Atru.chr6.1995 Acer truncatum HOM05D000143 ORTHO05D000072 2.4e-18 95.9 106 50.9
CiPaw.07G023100 Carya illinoinensis HOM05D000143 ORTHO05D000072 1.2e-17 93.6 160 40.6
Manes.01G120400 Manihot esculenta HOM05D000143 ORTHO05D000072 1.2e-17 93.6 141 43.3
Rhsim04G0224600 Rhododendron simsii HOM05D000549 ORTHO05D001527 1.5e-17 93.2 108 50.9
THA.LOC104806005 Tarenaya hassleriana HOM05D000143 ORTHO05D000072 7.6e-17 90.9 156 37.2
RcHm_v2.0_Chr1g0344401 Rosa chinensis HOM05D000143 ORTHO05D000072 1.3e-16 90.1 145 39.3
FvH4_7g08940 Fragaria vesca HOM05D000143 ORTHO05D000072 1.7e-16 89.7 132 40.9
FAN10G3284 Fragaria x ananassa HOM05D000143 ORTHO05D000072 1.7e-16 89.7 132 40.9
Prupe.2G118600 Prunus persica HOM05D000143 ORTHO05D000072 1.7e-16 89.7 145 38.6
FAN03G0191 Fragaria x ananassa HOM05D000143 ORTHO05D000072 2.2e-16 89.4 143 39.9
FAN01G2184 Fragaria x ananassa HOM05D000143 ORTHO05D000072 5.0e-16 88.2 132 40.2
FAN06G0340 Fragaria x ananassa HOM05D000143 ORTHO05D000072 3.2e-15 85.5 183 35.5
FAN10G2542 Fragaria x ananassa HOM05D000143 ORTHO05D000072 3.2e-15 85.5 143 37.8
Eucgr.H04549 Eucalyptus grandis HOM05D000143 ORTHO05D000072 5.5e-15 84.7 145 40.0
Ciclev10002302m.g Citrus clementina HOM05D000143 ORTHO05D000072 7.2e-15 84.3 53 77.4
FAN12G3681 Fragaria x ananassa HOM05D000143 ORTHO05D000072 7.2e-15 84.3 104 46.2
FAN17G2740 Fragaria x ananassa HOM05D000143 ORTHO05D000072 7.2e-15 84.3 104 46.2
Potri.013G014400 Populus trichocarpa HOM05D000143 ORTHO05D000072 7.2e-15 84.3 160 36.2
Thecc.05G314900 Theobroma cacao HOM05D000143 ORTHO05D000072 2.1e-14 82.8 146 38.4
PGR031G0457 Punica granatum HOM05D000143 ORTHO05D000072 4.6e-14 81.6 149 36.9
Gorai.013G126400 Gossypium raimondii HOM05D000143 ORTHO05D000072 1.0e-13 80.5 147 36.1
Nn3g21521 Nelumbo nucifera HOM05D000143 ORTHO05D000072 1.0e-13 80.5 103 45.6
Gohir.D13G112600 Gossypium hirsutum HOM05D000143 ORTHO05D000072 1.4e-13 80.1 147 36.1
CiPaw.02G081000 Carya illinoinensis HOM05D000143 ORTHO05D000072 3.0e-13 79.0 148 37.8
TWI53G0097 Tripterygium wilfordii HOM05D000143 ORTHO05D000072 3.9e-13 78.6 143 40.6
CANSAT54G1740 Cannabis sativa HOM05D000143 ORTHO05D000072 5.1e-13 78.2 142 35.9
CANSAT78G1011 Cannabis sativa HOM05D000143 ORTHO05D000072 5.1e-13 78.2 149 36.9
Thecc.05G314700 Theobroma cacao HOM05D000143 ORTHO05D000072 6.7e-13 77.8 147 36.1
Dinv40354 Davidia involucrata HOM05D000143 ORTHO05D000072 8.8e-13 77.4 147 38.8
Gohir.A13G110100 Gossypium hirsutum HOM05D000143 ORTHO05D000072 1.1e-12 77.0 147 35.4
Rhsim07G0191800 Rhododendron simsii HOM05D000143 ORTHO05D000072 1.1e-12 77.0 146 37.7
CSS0021289 Camellia sinensis var. sinensis HOM05D000143 ORTHO05D000072 1.5e-12 76.6 146 37.0
Haze_04123 Corylus avellana HOM05D000143 ORTHO05D000072 1.5e-12 76.6 130 38.5
Dinv29739 Davidia involucrata HOM05D000143 ORTHO05D000072 3.3e-12 75.5 145 37.2
Manes.15G011300 Manihot esculenta HOM05D000143 ORTHO05D000072 3.3e-12 75.5 147 36.7
Lj9A184T24 Lonicera japonica HOM05D000143 ORTHO05D000072 9.7e-12 73.9 144 38.2
Lj9A189T25 Lonicera japonica HOM05D000143 ORTHO05D000072 9.7e-12 73.9 144 38.2
Potri.013G014500 Populus trichocarpa HOM05D000143 ORTHO05D000072 9.7e-12 73.9 145 34.5
RcHm_v2.0_Chr4g0423041 Rosa chinensis HOM05D000143 ORTHO05D000072 1.7e-11 73.2 165 33.9
arahy.Tifrunner.gnm1.ann1.QI357H Arachis hypogaea HOM05D000143 ORTHO05D000072 2.2e-11 72.8 102 39.2
Sabra05G0029300 Salix brachista HOM05D000143 ORTHO05D000072 2.2e-11 72.8 166 34.3
TAR362G0232 Trochodendron aralioides HOM05D000143 ORTHO05D000072 2.2e-11 72.8 144 36.8
HanXRQChr03g0075321 Helianthus annuus HOM05D000143 ORTHO05D000072 2.8e-11 72.4 146 37.0
Potri.005G023900 Populus trichocarpa HOM05D000143 ORTHO05D000072 2.8e-11 72.4 140 37.1
TAR362G0322 Trochodendron aralioides HOM05D000143 ORTHO05D000072 2.8e-11 72.4 144 36.8
TWI73G0277 Tripterygium wilfordii HOM05D000143 ORTHO05D000072 4.8e-11 71.6 143 36.4
Manes.03G197300 Manihot esculenta HOM05D000143 ORTHO05D000072 8.2e-11 70.9 147 39.5
GSVIVG01031172001 Vitis vinifera HOM05D000143 ORTHO05D000072 8.2e-11 70.9 136 33.1
HanXRQChr03g0075351 Helianthus annuus HOM05D000143 ORTHO05D000072 2.4e-10 69.3 146 36.3
vmacro08173 Vaccinium macrocarpon HOM05D000143 ORTHO05D000072 2.4e-10 69.3 137 36.5
ClCG05G006190 Citrullus lanatus HOM05D000143 ORTHO05D000072 3.1e-10 68.9 105 40.0
DCAR_002148 Daucus carota HOM05D000143 ORTHO05D000072 4.1e-10 68.6 147 35.4
MBI19_g34786_MAGBIO Magnolia biondii HOM05D000143 ORTHO05D000072 4.1e-10 68.6 135 33.3
QL03p019868 Quercus lobata HOM05D000143 ORTHO05D000072 4.1e-10 68.6 137 35.0
Actinidia40292 Actinidia chinensis HOM05D000143 ORTHO05D000072 5.3e-10 68.2 145 33.8
CANSAT78G1553 Cannabis sativa HOM05D000143 ORTHO05D000072 5.3e-10 68.2 131 34.4
Cc02_g34330 Coffea canephora HOM05D000143 ORTHO05D000072 6.9e-10 67.8 136 34.6
DCAR_030512 Daucus carota HOM05D000143 ORTHO05D000072 6.9e-10 67.8 145 32.4
Oeu043332.1 Olea europaea HOM05D000143 ORTHO05D000072 6.9e-10 67.8 142 35.2
Cpa.g.sc48.106 Carica papaya HOM05D000143 ORTHO05D000072 1.2e-09 67.0 92 40.2
vmacro15015 Vaccinium macrocarpon HOM05D000143 ORTHO05D000072 1.2e-09 67.0 73 57.5
Duzib151G0501 Durio zibethinus HOM05D000143 ORTHO05D000072 1.5e-09 66.6 142 32.4
Thecc.04G287400 Theobroma cacao HOM05D000143 ORTHO05D000072 2.0e-09 66.2 121 37.2
Gohir.D10G171600 Gossypium hirsutum HOM05D000143 ORTHO05D000072 2.6e-09 65.9 120 35.8
Gorai.011G191700 Gossypium raimondii HOM05D000143 ORTHO05D000072 2.6e-09 65.9 120 35.8
Gohir.A10G165500 Gossypium hirsutum HOM05D000143 ORTHO05D000072 4.5e-09 65.1 120 35.0
FvH4_4g18490 Fragaria vesca HOM05D000143 ORTHO05D000072 5.9e-09 64.7 144 33.3
MD13G1166800 Malus domestica HOM05D000143 ORTHO05D000072 5.9e-09 64.7 146 33.6
PGR031G3712 Punica granatum HOM05D000143 ORTHO05D000072 5.9e-09 64.7 146 36.3
Gorai.005G061100 Gossypium raimondii HOM05D000143 ORTHO05D000072 1.0e-08 63.9 142 31.0
Nn3g21522 Nelumbo nucifera HOM05D000143 ORTHO05D000072 1.0e-08 63.9 88 42.0
ECA248G0733 Erigeron canadensis HOM05D000143 ORTHO05D000072 1.3e-08 63.5 147 33.3
Prupe.1G133300 Prunus persica HOM05D000143 ORTHO05D000072 1.3e-08 63.5 147 32.0
TPR.G5803 Trifolium pratense HOM05D000143 ORTHO05D000072 1.3e-08 63.5 141 33.3
GSVIVG01035138001 Vitis vinifera HOM05D000143 ORTHO05D000072 1.3e-08 63.5 135 34.1
Gohir.D02G055200 Gossypium hirsutum HOM05D000143 ORTHO05D000072 1.7e-08 63.2 142 31.0
Thhalv10026320m.g Eutrema salsugineum HOM05D000143 ORTHO05D000072 2.2e-08 62.8 79 44.3
Hma1.2p1_0078F.1_g040420 Hydrangea macrophylla HOM05D000143 ORTHO05D000072 2.2e-08 62.8 131 32.1
Duzib177G1008 Durio zibethinus HOM05D000143 ORTHO05D000072 2.9e-08 62.4 75 37.3
Gohir.D11G279000 Gossypium hirsutum HOM05D000143 ORTHO05D000072 2.9e-08 62.4 54 63.0
Gorai.007G301200 Gossypium raimondii HOM05D000143 ORTHO05D000072 2.9e-08 62.4 54 63.0
Nitab4.5_0001332g0140 Nicotiana tabacum HOM05D000143 ORTHO05D000072 2.9e-08 62.4 92 37.0
Oeu017269.1 Olea europaea HOM05D000143 ORTHO05D000072 2.9e-08 62.4 144 32.6
Hund24886 Selenicereus undatus HOM05D000143 ORTHO05D000072 2.9e-08 62.4 131 32.8
FAN12G1978 Fragaria x ananassa HOM05D000143 ORTHO05D000072 3.8e-08 62.0 155 31.6
Actinidia16828 Actinidia chinensis HOM05D000143 ORTHO05D000072 5.0e-08 61.6 121 37.2
Eucgr.H04550 Eucalyptus grandis HOM05D000143 ORTHO05D000072 8.5e-08 60.8 132 31.8
Nitab4.5_0019996g0010 Nicotiana tabacum HOM05D000143 ORTHO05D000072 8.5e-08 60.8 146 31.5
Gohir.A02G050100 Gossypium hirsutum HOM05D000143 ORTHO05D000072 1.1e-07 60.5 124 33.9
Dinv40355 Davidia involucrata HOM05D000143 ORTHO05D000072 1.4e-07 60.1 84 40.5
Oeu026326.1 Olea europaea HOM05D000143 ORTHO05D000072 1.4e-07 60.1 142 31.0
Sc13g0003350 Simmondsia chinensis HOM05D000143 ORTHO05D000072 1.4e-07 60.1 131 32.1
VMungo1309G1889 Vigna mungo HOM05D000143 ORTHO05D000072 1.4e-07 60.1 144 34.0
Lj9C184T3 Lonicera japonica HOM05D000143 ORTHO05D000072 1.9e-07 59.7 88 38.6
SalBow3G0589 Salvia bowleyana HOM05D000143 ORTHO05D000072 2.5e-07 59.3 137 32.8
SalBow7G0345 Salvia bowleyana HOM05D000143 ORTHO05D000072 2.5e-07 59.3 146 30.8
EL10Ac3g06628 Beta vulgaris HOM05D000143 ORTHO05D000072 3.2e-07 58.9 147 33.3
CANSAT54G2767 Cannabis sativa HOM05D000143 ORTHO05D000072 3.2e-07 58.9 72 48.6
Lj9C189G4 Lonicera japonica HOM05D000143 ORTHO05D000072 3.2e-07 58.9 88 37.5
Potri.008G220600 Populus trichocarpa HOM05D000143 ORTHO05D000072 4.2e-07 58.5 131 31.3
Rhsim07G0080200 Rhododendron simsii HOM05D000143 ORTHO05D000072 4.2e-07 58.5 75 37.3
Sopen01g043390 Solanum pennellii HOM05D000143 ORTHO05D000072 4.2e-07 58.5 118 32.2
Cc03_g01670 Coffea canephora HOM05D000143 ORTHO05D000072 5.5e-07 58.2 148 33.8
FAN08G1237 Fragaria x ananassa HOM05D000143 ORTHO05D000072 5.5e-07 58.2 96 37.5
Aa31LG10G6220 Aethionema arabicum HOM05D000143 ORTHO05D000072 1.6e-06 56.6 158 30.4
Glyma.15G149800 Glycine max HOM05D000143 ORTHO05D000072 2.1e-06 56.2 142 33.1
Lj6A679G26 Lonicera japonica HOM05D000143 ORTHO05D000072 2.1e-06 56.2 100 37.0
Nitab4.5_0003113g0100 Nicotiana tabacum HOM05D000143 ORTHO05D000072 2.1e-06 56.2 145 30.3
CsaV3_3G014800 Cucumis sativus L. HOM05D000143 ORTHO05D000072 2.7e-06 55.8 145 29.7
Medtr2g436310 Medicago truncatula HOM05D000143 ORTHO05D000072 2.7e-06 55.8 146 29.5
Solyc01g099870.3 Solanum lycopersicum HOM05D000143 ORTHO05D000072 2.7e-06 55.8 118 31.4
Actinidia29512 Actinidia chinensis HOM05D000143 ORTHO05D000072 3.6e-06 55.5 99 39.4
ATR0796G221 Amborella trichopoda HOM05D000143 ORTHO05D000072 3.6e-06 55.5 142 28.2
AUR62032012 Chenopodium quinoa HOM05D000143 ORTHO05D000072 3.6e-06 55.5 131 31.3
AUR62018089 Chenopodium quinoa HOM05D000143 ORTHO05D000072 4.7e-06 55.1 126 34.1
COL.COLO4_10541 Corchorus olitorius HOM05D000143 ORTHO05D000072 4.7e-06 55.1 58 51.7
PGSC0003DMG400024763 Solanum tuberosum HOM05D000143 ORTHO05D000072 4.7e-06 55.1 118 30.5
Haze_03559 Corylus avellana HOM05D000143 ORTHO05D000072 6.1e-06 54.7 139 31.7
THA.LOC104802578 Tarenaya hassleriana HOM05D000143 ORTHO05D000072 6.1e-06 54.7 136 33.1
ATR0730G056 Amborella trichopoda HOM05D000143 ORTHO05D000072 7.9e-06 54.3 69 42.0
vmacro11527 Vaccinium macrocarpon HOM05D000143 ORTHO05D000072 7.9e-06 54.3 80 36.2
GSVIVG01031173001 Vitis vinifera HOM05D000657 ORTHO05D001476 7.9e-06 54.3 45 51.1


User provided reference genes

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