Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.1027 Acer truncatum HOM05D003506 ORTHO05D004063 2.0e-98 362.5 182 100.0
Atru.chr2.1044 Acer truncatum HOM05D003506 ORTHO05D004063 4.7e-84 314.7 170 94.7
Atru.chr2.1020 Acer truncatum HOM05D003506 ORTHO05D004063 2.3e-83 312.4 171 93.0
Atru.chr2.1012 Acer truncatum HOM05D003506 ORTHO05D004063 1.8e-64 249.6 154 85.7
Atru.chr2.2779 Acer truncatum HOM05D003506 ORTHO05D004063 1.9e-21 106.7 106 57.5
CARHR176610 Cardamine hirsuta HOM05D003506 ORTHO05D004063 1.3e-20 104.0 144 47.2
QL12p009886 Quercus lobata HOM05D003506 ORTHO05D004063 2.8e-20 102.8 145 42.1
QL12p010549 Quercus lobata HOM05D003506 ORTHO05D004063 2.8e-20 102.8 145 42.1
AL8G13340 Arabidopsis lyrata HOM05D003506 ORTHO05D004063 4.8e-20 102.1 150 45.3
Atru.chr2.2548 Acer truncatum HOM05D003506 ORTHO05D004063 6.2e-20 101.7 145 48.3
FAN14G0755 Fragaria x ananassa HOM05D003506 ORTHO05D004063 3.1e-19 99.4 161 46.0
Potri.003G101000 Populus trichocarpa HOM05D003506 ORTHO05D004063 4.0e-19 99.0 150 42.0
Hma1.2p1_2475F.1_g322790 Hydrangea macrophylla HOM05D003506 ORTHO05D004063 9.0e-19 97.8 158 42.4
FvH4_6g22120 Fragaria vesca HOM05D003506 ORTHO05D004063 3.4e-18 95.9 141 48.9
Duzib205G1851 Durio zibethinus HOM05D003506 ORTHO05D004063 1.7e-17 93.6 175 38.9
TWI60G1006 Tripterygium wilfordii HOM05D003506 ORTHO05D004063 2.2e-17 93.2 154 42.2
Cc02_g12220 Coffea canephora HOM05D003506 ORTHO05D004063 2.9e-17 92.8 135 41.5
RcHm_v2.0_Chr3g0479451 Rosa chinensis HOM05D003506 ORTHO05D004063 2.9e-17 92.8 138 47.1
COL.COLO4_15511 Corchorus olitorius HOM05D003506 ORTHO05D004063 6.4e-17 91.7 145 38.6
Haze_19428 Corylus avellana HOM05D003506 ORTHO05D004063 2.4e-16 89.7 143 39.2
Cc00_g30260 Coffea canephora HOM05D003506 ORTHO05D004063 1.2e-15 87.4 148 38.5
CSS0017703 Camellia sinensis var. sinensis HOM05D003506 ORTHO05D004063 2.1e-15 86.7 149 38.9
Atru.chr2.2525 Acer truncatum HOM05D003506 ORTHO05D004063 2.7e-15 86.3 91 56.0
CSS0044487 Camellia sinensis var. sinensis HOM05D003506 ORTHO05D004063 7.9e-15 84.7 147 38.8
Eucgr.E00383 Eucalyptus grandis HOM05D003506 ORTHO05D004063 1.3e-14 84.0 144 37.5
THA.LOC104798470 Tarenaya hassleriana HOM05D002287 ORTHO05D004063 2.3e-14 83.2 143 32.9
CSS0002170 Camellia sinensis var. sinensis HOM05D003506 ORTHO05D004063 3.0e-14 82.8 147 36.1
Carub.0008s0262 Capsella rubella HOM05D003506 ORTHO05D004063 6.7e-14 81.6 139 41.0
Cc00_g10090 Coffea canephora HOM05D003506 ORTHO05D004063 8.7e-14 81.3 149 38.3
CiPaw.12G027400 Carya illinoinensis HOM05D003506 ORTHO05D004063 1.9e-13 80.1 141 39.0
BcaNung04016 Brassica carinata HOM05D003506 ORTHO05D004063 2.5e-13 79.7 178 33.7
PGR042G2042 Punica granatum HOM05D003506 ORTHO05D004063 7.4e-13 78.2 167 35.3
Lj1A1215T59 Lonicera japonica HOM05D003506 ORTHO05D004063 9.6e-13 77.8 140 42.1
Atru.chr2.432 Acer truncatum HOM05D039078 ORTHO05D004063 1.3e-12 77.4 127 42.5
DCAR_013527 Daucus carota HOM05D003506 ORTHO05D004063 1.3e-12 77.4 137 39.4
RhsimUnG0207500 Rhododendron simsii HOM05D003506 ORTHO05D004063 1.3e-12 77.4 152 36.2
Atru.chr2.439 Acer truncatum HOM05D039078 ORTHO05D015752 1.6e-12 77.0 116 41.4
AL7G35000 Arabidopsis lyrata HOM05D000432 ORTHO05D004063 2.1e-12 76.6 168 32.1
Actinidia20129 Actinidia chinensis HOM05D003506 ORTHO05D004063 4.8e-12 75.5 154 40.3
CiPaw.11G083500 Carya illinoinensis HOM05D003506 ORTHO05D004063 6.2e-12 75.1 154 35.7
QL12p010090 Quercus lobata HOM05D003506 ORTHO05D004063 6.2e-12 75.1 172 35.5
Actinidia11820 Actinidia chinensis HOM05D003506 ORTHO05D006958 8.1e-12 74.7 158 34.8
Dinv40460 Davidia involucrata HOM05D003506 ORTHO05D004063 8.1e-12 74.7 117 45.3
Prupe.7G078000 Prunus persica HOM05D003506 ORTHO05D004063 1.4e-11 73.9 159 36.5
Gohir.A08G152600 Gossypium hirsutum HOM05D003506 ORTHO05D004063 1.8e-11 73.6 156 34.6
Rhsim03G0012900 Rhododendron simsii HOM05D003506 ORTHO05D004063 2.4e-11 73.2 160 31.2
Cc05_g09100 Coffea canephora HOM05D003506 ORTHO05D004063 6.9e-11 71.6 145 35.2
Rhsim03G0013500 Rhododendron simsii HOM05D003506 ORTHO05D004063 6.9e-11 71.6 160 31.2
PGR044G0363 Punica granatum HOM05D003506 ORTHO05D004063 1.2e-10 70.9 118 39.8
Rhsim03G0013200 Rhododendron simsii HOM05D003506 ORTHO05D004063 1.2e-10 70.9 142 35.2
QL12p009920 Quercus lobata HOM05D003506 ORTHO05D004063 1.5e-10 70.5 94 43.6
PGR042G2755 Punica granatum HOM05D003506 ORTHO05D004063 2.0e-10 70.1 164 35.4
Thhalv10000742m.g Eutrema salsugineum HOM05D003506 ORTHO05D004063 5.8e-10 68.6 116 34.5
Thecc.03G312300 Theobroma cacao HOM05D003506 ORTHO05D004063 7.6e-10 68.2 184 36.4
Cfa001536 Carpinus fangiana HOM05D003506 ORTHO05D004063 9.9e-10 67.8 191 29.3
Cc00_g21830 Coffea canephora HOM05D003506 ORTHO05D004063 9.9e-10 67.8 119 38.7
Gorai.004G181200 Gossypium raimondii HOM05D003506 ORTHO05D004063 1.3e-09 67.4 160 35.0
Aa31LG9G7510 Aethionema arabicum HOM05D003506 ORTHO05D004063 1.7e-09 67.0 137 34.3
Cpa.g.sc27.149 Carica papaya HOM05D003506 ORTHO05D004063 2.2e-09 66.6 140 37.1
Cpa.g.sc27.153 Carica papaya HOM05D003506 ORTHO05D004063 2.2e-09 66.6 131 36.6
Gohir.D08G173500 Gossypium hirsutum HOM05D003506 ORTHO05D004063 2.2e-09 66.6 135 39.3
Rhsim03G0013700 Rhododendron simsii HOM05D003506 ORTHO05D004063 2.2e-09 66.6 165 33.3
Eucgr.D00770 Eucalyptus grandis HOM05D003506 ORTHO05D004063 4.9e-09 65.5 153 30.7
Eucgr.E03688 Eucalyptus grandis HOM05D003506 ORTHO05D004063 8.4e-09 64.7 116 34.5
AT4G19050 Arabidopsis thaliana HOM05D003506 ORTHO05D004063 1.1e-08 64.3 153 33.3
BcaNung04011 Brassica carinata HOM05D003506 ORTHO05D004063 1.1e-08 64.3 159 32.7
Cpa.g.sc27.152 Carica papaya HOM05D003506 ORTHO05D004063 1.1e-08 64.3 125 33.6
Cpa.g.sc727.3 Carica papaya HOM05D003506 ORTHO05D004063 1.1e-08 64.3 155 32.9
AL8G13190 Arabidopsis lyrata HOM05D003506 ORTHO05D004063 1.4e-08 63.9 128 35.2
Haze_19427 Corylus avellana HOM05D003506 ORTHO05D004063 1.4e-08 63.9 144 34.7
AT5G45510 Arabidopsis thaliana HOM05D003506 ORTHO05D004063 1.9e-08 63.5 130 34.6
BcaC09g51442 Brassica carinata HOM05D003506 ORTHO05D004063 3.2e-08 62.8 154 31.8
C01p13080 Brassica napus HOM05D003506 ORTHO05D004063 3.2e-08 62.8 154 31.8
BolC1t01282H Brassica oleracea HOM05D003506 ORTHO05D004063 3.2e-08 62.8 154 31.8
COL.COLO4_16912 Corchorus olitorius HOM05D003506 ORTHO05D004063 3.2e-08 62.8 169 30.8
MD14G1055300 Malus domestica HOM05D003506 ORTHO05D004063 4.2e-08 62.4 138 35.5
DCAR_009112 Daucus carota HOM05D003506 ORTHO05D004063 5.5e-08 62.0 167 27.5
Carub.0007s2209 Capsella rubella HOM05D003506 ORTHO05D004063 7.1e-08 61.6 149 30.9
CiPaw.12G027300 Carya illinoinensis HOM05D003506 ORTHO05D004063 7.1e-08 61.6 133 30.1
Ciclev10033967m.g Citrus clementina HOM05D003506 ORTHO05D004063 7.1e-08 61.6 116 33.6
THA.LOC104806185 Tarenaya hassleriana HOM05D003506 ORTHO05D004063 7.1e-08 61.6 114 38.6
THA.LOC109116396 Tarenaya hassleriana HOM05D003506 ORTHO05D004063 9.3e-08 61.2 125 35.2
A01p11060 Brassica napus HOM05D003506 ORTHO05D004063 1.6e-07 60.5 159 30.2
AL7G35050 Arabidopsis lyrata HOM05D003506 ORTHO05D004063 2.7e-07 59.7 173 29.5
Thhalv10024259m.g Eutrema salsugineum HOM05D003506 ORTHO05D004063 4.6e-07 58.9 149 31.5
QL12p010204 Quercus lobata HOM05D003506 ORTHO05D004063 6.0e-07 58.5 132 34.8
BraA01t01053Z Brassica rapa HOM05D003506 ORTHO05D004063 7.9e-07 58.2 155 31.0
Gohir.D12G206300 Gossypium hirsutum HOM05D003506 ORTHO05D004063 7.9e-07 58.2 146 31.5
SGA_v2.0_scaffold69G23083 Striga asiatica HOM05D003506 ORTHO05D004063 7.9e-07 58.2 145 31.7
Cpa.g.sc27.147 Carica papaya HOM05D003506 ORTHO05D004063 1.3e-06 57.4 131 32.8
BcaC06g34429 Brassica carinata HOM05D003506 ORTHO05D004063 1.8e-06 57.0 175 30.3
A02p29260 Brassica napus HOM05D003506 ORTHO05D004063 1.8e-06 57.0 177 28.2
C07p28600 Brassica napus HOM05D003506 ORTHO05D004063 1.8e-06 57.0 175 30.3
BraA02t07955Z Brassica rapa HOM05D003506 ORTHO05D004063 1.8e-06 57.0 177 28.2
Gorai.008G221500 Gossypium raimondii HOM05D003506 ORTHO05D004063 3.0e-06 56.2 149 30.9
ECA248G2101 Erigeron canadensis HOM05D003506 ORTHO05D004063 3.9e-06 55.8 141 34.0
COL.COLO4_16868 Corchorus olitorius HOM05D003506 ORTHO05D004063 5.1e-06 55.5 123 33.3
Thecc.03G315800 Theobroma cacao HOM05D003506 ORTHO05D004063 6.7e-06 55.1 156 31.4
Cpa.g.sc27.142 Carica papaya HOM05D003506 ORTHO05D004063 8.7e-06 54.7 155 31.0


User provided reference genes

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