Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 1.6e-172 609.4 313 100.0
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 1.0e-171 606.7 313 99.7
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.1e-93 347.4 365 57.5
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 8.6e-86 321.2 330 57.0
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 5.6e-85 318.5 325 56.9
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 2.2e-81 306.6 331 55.9
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 9.5e-77 291.2 348 53.4
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 3.6e-76 289.3 346 55.2
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 6.2e-76 288.5 329 54.4
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 2.3e-75 286.6 361 51.8
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 5.2e-75 285.4 365 51.5
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 1.5e-74 283.9 377 49.3
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 3.4e-74 282.7 356 50.8
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 4.4e-74 282.3 379 48.5
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 4.4e-74 282.3 362 51.4
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 4.4e-74 282.3 350 50.9
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 1.3e-73 280.8 378 50.0
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 3.7e-73 279.3 362 51.4
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 4.9e-73 278.9 362 50.8
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 3.2e-72 276.2 364 50.0
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 5.4e-72 275.4 371 50.9
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 3.5e-71 272.7 361 49.9
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 6.0e-71 271.9 308 52.3
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 7.8e-71 271.6 324 51.5
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.3e-70 270.8 308 52.3
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.3e-70 270.8 370 47.8
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 5.1e-70 268.9 362 49.4
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 2.5e-69 266.5 364 50.3
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 5.6e-69 265.4 370 48.4
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 4.7e-68 262.3 355 47.9
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.1e-67 259.6 370 46.5
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 5.2e-67 258.8 367 47.4
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.5e-66 257.3 372 46.8
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 2.6e-66 256.5 335 50.1
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.4e-66 256.1 339 47.5
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 7.5e-66 255.0 343 48.1
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.3e-65 254.2 340 48.8
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.7e-65 253.8 362 47.2
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 2.2e-65 253.4 345 49.0
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.9e-65 253.1 335 51.0
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.9e-65 253.1 337 50.1
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 6.4e-65 251.9 342 48.2
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 8.3e-65 251.5 337 49.9
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 8.3e-65 251.5 344 49.7
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 4.1e-64 249.2 326 47.9
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 4.1e-64 249.2 400 44.0
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 5.4e-64 248.8 341 48.1
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 5.4e-64 248.8 304 50.7
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 7.1e-64 248.4 345 47.8
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.2e-63 247.7 370 45.1
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.7e-63 246.5 333 50.2
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 3.5e-63 246.1 335 47.5
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 2.5e-61 240.0 338 48.8
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 3.3e-61 239.6 360 46.7
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 4.3e-61 239.2 315 47.0
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 3.6e-60 236.1 328 47.3
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 1.1e-59 234.6 399 43.4
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 3.1e-59 233.0 349 44.1
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 3.4e-58 229.6 334 46.7
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 9.9e-58 228.0 304 46.1
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 4.9e-57 225.7 330 43.6
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 8.4e-57 224.9 314 50.0
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.9e-56 223.8 375 43.2
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 3.5e-55 219.5 402 40.8
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.9e-53 213.8 334 44.0
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 5.6e-53 212.2 309 43.7
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 5.6e-53 212.2 302 46.0
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 2.1e-52 210.3 332 45.8
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 7.6e-50 201.8 352 41.2
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 4.9e-49 199.1 318 45.6
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.1e-48 198.0 303 43.9
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 3.2e-48 196.4 281 45.6
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 3.2e-48 196.4 281 45.6
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 3.2e-48 196.4 330 42.7
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.2e-48 196.4 319 44.2
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 5.4e-48 195.7 333 41.7
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 7.1e-48 195.3 332 41.0
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 9.3e-48 194.9 313 42.5
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.6e-47 194.1 304 43.1
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 6.0e-47 192.2 332 41.3
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 1.0e-46 191.4 327 40.4
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 8.7e-46 188.3 303 42.6
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 8.7e-46 188.3 309 43.0
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.9e-45 187.2 306 40.8
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.5e-45 186.8 367 37.6
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 3.3e-45 186.4 302 41.4
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 3.3e-45 186.4 338 41.4
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 9.6e-45 184.9 316 42.4
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 9.6e-45 184.9 365 39.5
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.3e-44 184.5 315 41.6
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 6.2e-44 182.2 313 38.0
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 8.1e-44 181.8 306 41.8
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.4e-43 181.0 344 37.2
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.8e-43 180.6 356 37.9
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 3.1e-43 179.9 309 40.5
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 5.3e-43 179.1 313 40.3
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 6.9e-43 178.7 313 40.3
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 6.9e-43 178.7 313 40.3
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 6.9e-43 178.7 306 41.2
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 3.4e-42 176.4 306 40.8
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 7.6e-42 175.3 312 41.3
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.9e-41 173.3 363 35.8
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 1.1e-40 171.4 310 42.6
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.4e-40 171.0 363 36.9
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.9e-40 170.6 313 40.9
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 3.2e-40 169.9 334 38.0
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.2e-40 169.5 379 36.1
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 4.2e-40 169.5 132 68.9
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 7.9e-39 165.2 366 38.8
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 2.3e-38 163.7 306 38.6
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 5.1e-38 162.5 304 41.1
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 8.7e-38 161.8 261 41.4
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 8.7e-38 161.8 261 41.4
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 1.6e-36 157.5 212 46.2
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 2.0e-34 150.6 357 36.1
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 2.6e-34 150.2 368 33.2
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.0e-33 148.3 151 59.6
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.3e-33 147.9 355 35.2
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 4.9e-33 146.0 327 37.9
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 4.9e-33 146.0 445 31.0
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 6.4e-33 145.6 323 36.2
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 1.9e-32 144.1 327 35.2
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 2.5e-32 143.7 365 34.8
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 9.3e-32 141.7 332 35.5
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 1.2e-31 141.4 304 35.9
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 1.2e-31 141.4 108 69.4
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 3.5e-31 139.8 324 34.9
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 3.5e-31 139.8 324 34.9
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.0e-30 138.3 336 34.2
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 1.3e-30 137.9 210 42.9
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 1.1e-29 134.8 153 48.4
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 1.1e-29 134.8 153 48.4
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 2.5e-29 133.7 107 69.2
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 3.3e-29 133.3 204 42.6
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 3.3e-29 133.3 340 32.4
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 4.3e-29 132.9 194 44.3
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 4.3e-29 132.9 156 49.4
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 7.4e-29 132.1 152 48.0
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 3.7e-28 129.8 105 67.6
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 3.7e-28 129.8 105 67.6
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 6.9e-27 125.6 183 43.2
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 9.0e-27 125.2 125 56.0
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 1.2e-26 124.8 304 32.9
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 1.2e-26 124.8 304 32.9
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 1.2e-26 124.8 304 32.9
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 3.4e-26 123.2 106 63.2
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 7.6e-26 122.1 306 33.7
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 1.7e-25 120.9 106 62.3
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 2.2e-25 120.6 139 46.0
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 4.9e-25 119.4 142 50.0
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 3.2e-24 116.7 312 33.7
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 7.1e-24 115.5 255 37.3
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 1.2e-23 114.8 132 47.7
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.7e-23 113.6 104 53.8
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 3.0e-22 110.2 140 51.4
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 6.7e-22 109.0 73 78.1
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 6.7e-22 109.0 112 58.0
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 1.5e-21 107.8 307 31.3
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 2.5e-21 107.1 89 52.8
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 7.4e-21 105.5 112 57.1
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 2.2e-20 104.0 73 74.0
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 2.8e-20 103.6 112 56.2
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 2.6e-18 97.1 312 30.1
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 1.4e-16 91.3 108 52.8
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 1.9e-16 90.9 98 53.1
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 2.5e-16 90.5 274 27.7
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 5.5e-16 89.4 108 51.9
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 7.9e-15 85.5 258 31.4
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 3.0e-14 83.6 139 37.4
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 1.1e-13 81.6 272 26.5
Sabra16G0293500 Salix brachista HOM05D003874 ORTHO05D004545 1.3e-09 68.2 106 46.2
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.1e-08 65.1 43 79.1
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 2.5e-08 63.9 87 40.2
unitig_37.g13077 Utricularia gibba HOM05D003874 ORTHO05D030560 4.7e-07 59.7 113 38.1


User provided reference genes

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