Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.2454 Acer truncatum HOM05D007952 ORTHO05D009823 6.9e-62 240.4 112 100.0
Nn029s41587 Nelumbo nucifera HOM05D007952 ORTHO05D009823 4.8e-55 217.6 117 89.7
Nn064s42224 Nelumbo nucifera HOM05D007952 ORTHO05D009823 4.8e-55 217.6 117 89.7
Nn206s45068 Nelumbo nucifera HOM05D007952 ORTHO05D009823 4.8e-55 217.6 117 89.7
Nn219s45283 Nelumbo nucifera HOM05D007952 ORTHO05D009823 4.8e-55 217.6 117 89.7
arahy.Tifrunner.gnm1.ann1.0845WK Arachis hypogaea HOM05D007952 ORTHO05D009823 2.0e-53 212.2 97 100.0
arahy.Tifrunner.gnm1.ann1.88RRM9 Arachis hypogaea HOM05D007952 ORTHO05D009823 2.0e-53 212.2 97 100.0
CSS0039937 Camellia sinensis var. sinensis HOM05D007952 ORTHO05D009823 1.0e-52 209.9 112 91.1
arahy.Tifrunner.gnm1.ann1.HDQ4NC Arachis hypogaea HOM05D007952 ORTHO05D009823 6.5e-52 207.2 97 96.9
Lsat_1_v5_gn_4_63021 Lactuca sativa HOM05D007952 ORTHO05D009823 3.4e-45 184.9 112 83.0
Lsat_1_v5_gn_4_99801 Lactuca sativa HOM05D007952 ORTHO05D009823 3.4e-45 184.9 112 83.0
PGSC0003DMG400028997 Solanum tuberosum HOM05D007952 ORTHO05D009823 3.4e-45 184.9 112 83.0
PGSC0003DMG400035391 Solanum tuberosum HOM05D007952 ORTHO05D009823 3.4e-45 184.9 112 83.0
arahy.Tifrunner.gnm1.ann1.J5KLX8 Arachis hypogaea HOM05D007952 ORTHO05D009823 5.9e-45 184.1 112 79.5
Oeu020621.1 Olea europaea HOM05D007952 ORTHO05D009823 2.5e-43 178.7 112 79.5
Nn5g29057 Nelumbo nucifera HOM05D007952 ORTHO05D009823 7.2e-43 177.2 112 81.2
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.2e-42 176.4 112 79.5
Medtr0002s0270 Medicago truncatula HOM05D007952 ORTHO05D009823 1.6e-42 176.0 112 79.5
Sc01g0006530 Simmondsia chinensis HOM05D007952 ORTHO05D009823 3.6e-42 174.9 112 79.5
arahy.Tifrunner.gnm1.ann1.XUIM66 Arachis hypogaea HOM05D007952 ORTHO05D009823 6.1e-42 174.1 100 83.0
Lj1g0013448 Lotus japonicus HOM05D007952 ORTHO05D009823 1.7e-39 166.0 93 86.0
Medtr3g035635 Medicago truncatula HOM05D007952 ORTHO05D009823 2.4e-38 162.2 97 81.4
Sc04g0003580 Simmondsia chinensis HOM05D007952 ORTHO05D009823 6.9e-38 160.6 112 74.1
ECA246G1432 Erigeron canadensis HOM05D007952 ORTHO05D009823 2.0e-37 159.1 112 75.0
arahy.Tifrunner.gnm1.ann1.RE2PS1 Arachis hypogaea HOM05D007952 ORTHO05D009823 1.0e-36 156.8 97 80.4
arahy.Tifrunner.gnm1.ann1.TT5YJH Arachis hypogaea HOM05D007952 ORTHO05D009823 2.9e-36 155.2 100 77.0
EL10Ac6g15366 Beta vulgaris HOM05D007952 ORTHO05D009823 4.2e-35 151.4 106 74.5
arahy.Tifrunner.gnm1.ann1.GIFH8E Arachis hypogaea HOM05D007952 ORTHO05D009823 1.2e-34 149.8 97 78.4
BcaB02g11353 Brassica carinata HOM05D007952 ORTHO05D009823 2.6e-32 142.1 67 98.5
MBI08_g48227_MAGBIO Magnolia biondii HOM05D007952 ORTHO05D009823 2.6e-32 142.1 67 98.5
Medtr4g006040 Medicago truncatula HOM05D008037 ORTHO05D009823 2.6e-32 142.1 88 78.4
Peaxi162Scf00987g00215 Petunia axillaris HOM05D007952 ORTHO05D009823 2.6e-32 142.1 67 98.5
unitig_87.g27919 Utricularia gibba HOM05D007952 ORTHO05D009823 2.6e-32 142.1 67 98.5
unitig_87.g28035 Utricularia gibba HOM05D007952 ORTHO05D009823 2.6e-32 142.1 67 98.5
unitig_91.g26519 Utricularia gibba HOM05D007952 ORTHO05D009823 2.6e-32 142.1 67 98.5
Migut.D01400 Erythranthe guttata HOM05D007952 ORTHO05D009823 3.3e-32 141.7 66 100.0
Lj2C1239G84 Lonicera japonica HOM05D007952 ORTHO05D009823 2.8e-31 138.7 68 97.1
EL10As10g23962 Beta vulgaris HOM05D007952 ORTHO05D009823 6.3e-31 137.5 67 97.0
BolSC44t60812H Brassica oleracea HOM05D007952 ORTHO05D009823 6.3e-31 137.5 88 78.4
Atru.chr9.365 Acer truncatum HOM05D007952 ORTHO05D009823 2.4e-30 135.6 91 74.7
arahy.Tifrunner.gnm1.ann1.PHD7EH Arachis hypogaea HOM05D007952 ORTHO05D009823 2.6e-29 132.1 97 69.1
SEGI_08440 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 2.9e-28 128.6 72 84.7
SEGI_09919 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 2.9e-28 128.6 72 84.7
SEGI_21867 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 2.9e-28 128.6 72 84.7
Sc23g0003910 Simmondsia chinensis HOM05D007952 ORTHO05D009823 1.1e-27 126.7 67 89.6
SEGI_38349 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 1.4e-25 119.8 80 76.2
ECA232G1868 Erigeron canadensis HOM05D000002 ORTHO05D002065 2.3e-25 119.0 57 94.7
Hma1.2p1_0594F.1_g185798 Hydrangea macrophylla HOM05D007952 ORTHO05D009823 3.9e-25 118.2 56 98.2
Sc21g0004590 Simmondsia chinensis HOM05D007952 ORTHO05D009823 3.9e-25 118.2 110 59.1
Lj4g0016112 Lotus japonicus HOM05D007952 ORTHO05D009823 1.5e-24 116.3 71 80.3
Nitab4.5_0004552g0010 Nicotiana tabacum HOM05D000796 ORTHO05D009823 7.4e-24 114.0 96 63.5
Nn6g32821 Nelumbo nucifera HOM05D007952 ORTHO05D009823 9.7e-24 113.6 54 96.3
Nn6g32826 Nelumbo nucifera HOM05D007952 ORTHO05D009823 9.7e-24 113.6 54 96.3
Oeu022560.1 Olea europaea HOM05D007952 ORTHO05D009823 2.8e-23 112.1 81 69.1
arahy.Tifrunner.gnm1.ann1.9E5EUV Arachis hypogaea HOM05D000388 ORTHO05D000473 2.4e-22 109.0 62 83.9
Psat0ss8367g0160 Pisum sativum HOM05D001387 ORTHO05D001250 2.0e-21 105.9 93 59.1
Nn6g33130 Nelumbo nucifera HOM05D007952 ORTHO05D009823 3.5e-21 105.1 49 98.0
Ca_02733_v3 Cicer arietinum L. HOM05D008016 ORTHO05D009823 8.5e-20 100.5 85 62.4
DCAR_004958 Daucus carota HOM05D007952 ORTHO05D009823 3.2e-19 98.6 71 71.8
Nitab4.5_0007400g0010 Nicotiana tabacum HOM05D007952 ORTHO05D009823 4.2e-19 98.2 68 70.6
CAN.G262.4 Capsicum annuum HOM05D007952 ORTHO05D009823 5.5e-19 97.8 84 61.9
Sopen11g014330 Solanum pennellii HOM05D000743 ORTHO05D000580 5.5e-19 97.8 80 65.0
Oeu000007.1 Olea europaea HOM05D007952 ORTHO05D009823 2.7e-18 95.5 78 60.3
Potri.005G037850 Populus trichocarpa HOM05D007952 ORTHO05D009823 3.0e-17 92.0 57 78.9
SEGI_20804 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 4.0e-17 91.7 57 77.2
CBR_g12953 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-16 89.0 55 76.4
Nn031s41604 Nelumbo nucifera HOM05D007952 ORTHO05D009823 3.3e-16 88.6 40 100.0
Nn233s45560 Nelumbo nucifera HOM05D007952 ORTHO05D009823 3.3e-16 88.6 40 100.0
Nn241s45689 Nelumbo nucifera HOM05D007952 ORTHO05D009823 3.3e-16 88.6 40 100.0
Nn6g33131 Nelumbo nucifera HOM05D007952 ORTHO05D009823 3.3e-16 88.6 40 100.0
Nn6g33484 Nelumbo nucifera HOM05D007952 ORTHO05D009823 3.3e-16 88.6 40 100.0
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 5.7e-16 87.8 42 95.2
BcaC04g20704 Brassica carinata HOM05D007952 ORTHO05D009823 1.3e-15 86.7 39 97.4
Phvul.009G038333 Phaseolus vulgaris HOM05D007952 ORTHO05D009823 2.8e-15 85.5 40 97.5
CAN.G1186.47 Capsicum annuum HOM05D007952 ORTHO05D009823 3.7e-15 85.1 75 60.0
Nn1g08228 Nelumbo nucifera HOM05D007952 ORTHO05D009823 4.8e-15 84.7 40 95.0
SEGI_02200 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 4.8e-15 84.7 65 64.6
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 1.8e-14 82.8 79 54.4
arahy.Tifrunner.gnm1.ann1.B37VQ6 Arachis hypogaea HOM05D007952 ORTHO05D009823 7.0e-14 80.9 64 65.6
arahy.Tifrunner.gnm1.ann1.60YYL0 Arachis hypogaea HOM05D010190 ORTHO05D009823 1.6e-13 79.7 39 92.3
Peaxi162Scf00002g00723 Petunia axillaris HOM05D007952 ORTHO05D009823 2.0e-13 79.3 73 56.2
Nitab4.5_0007025g0020 Nicotiana tabacum HOM05D001226 ORTHO05D009823 7.7e-13 77.4 55 69.1
SEGI_35056 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 7.7e-13 77.4 38 86.8
BolSC91t61267H Brassica oleracea HOM05D007952 ORTHO05D009823 1.2e-10 70.1 49 77.6
Oeu012768.1 Olea europaea HOM05D007952 ORTHO05D009823 2.7e-10 68.9 74 55.4
TPR.G7850 Trifolium pratense HOM05D008490 ORTHO05D010725 6.1e-10 67.8 112 42.0
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 4.0e-09 65.1 37 86.5
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 4.0e-09 65.1 37 86.5
BolC6t36075H Brassica oleracea HOM05D000963 ORTHO05D009823 2.6e-08 62.4 31 83.9
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 3.4e-08 62.0 41 75.6
Oeu011728.3 Olea europaea HOM05D002681 ORTHO05D003372 4.4e-08 61.6 29 96.6
Atru.chr9.2550 Acer truncatum HOM05D010190 ORTHO05D009823 5.7e-08 61.2 37 78.4
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 5.7e-08 61.2 38 73.7
Medtr3g028290 Medicago truncatula HOM05D007952 ORTHO05D009823 5.7e-08 61.2 30 90.0
Sed0014465 Sechium edule HOM05D010190 ORTHO05D004271 9.8e-08 60.5 37 81.1
CAN.G8.21 Capsicum annuum HOM05D000580 ORTHO05D001362 4.8e-07 58.2 80 41.2
Actinidia30703 Actinidia chinensis HOM05D001966 ORTHO05D009823 1.4e-06 56.6 65 52.3


User provided reference genes

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