Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.244 Acer truncatum HOM05D003331 ORTHO05D003264 2.6e-94 349.4 273 100.0
Potri.005G243400 Populus trichocarpa HOM05D003331 ORTHO05D003264 1.9e-28 130.6 206 47.1
Thecc.08G048800 Theobroma cacao HOM05D003331 ORTHO05D003264 5.1e-26 122.5 206 42.2
Sabra05G0188500 Salix brachista HOM05D003331 ORTHO05D003264 7.4e-25 118.6 213 44.6
Sabra05G0089800 Salix brachista HOM05D003331 ORTHO05D003264 4.8e-24 115.9 209 43.1
Manes.05G144400 Manihot esculenta HOM05D003331 ORTHO05D003264 2.6e-22 110.2 207 43.0
Duzib147G1072 Durio zibethinus HOM05D003331 ORTHO05D003264 2.2e-21 107.1 203 42.4
Potri.005G109500 Populus trichocarpa HOM05D003331 ORTHO05D003264 6.5e-21 105.5 214 41.1
COL.COLO4_26108 Corchorus olitorius HOM05D003331 ORTHO05D003264 8.4e-21 105.1 205 42.4
Haze_22676 Corylus avellana HOM05D003331 ORTHO05D003264 4.2e-20 102.8 209 40.7
Cfa013989 Carpinus fangiana HOM05D003331 ORTHO05D003264 1.6e-19 100.9 208 40.4
Manes.01G149900 Manihot esculenta HOM05D003331 ORTHO05D003264 1.6e-19 100.9 202 41.1
Thecc.01G013300 Theobroma cacao HOM05D003331 ORTHO05D003264 2.1e-19 100.5 204 40.2
QL06p051331 Quercus lobata HOM05D003331 ORTHO05D003264 4.6e-19 99.4 204 40.2
Manes.02G109000 Manihot esculenta HOM05D003331 ORTHO05D003264 8.7e-18 95.1 209 39.2
QL02p012465 Quercus lobata HOM05D003331 ORTHO05D003264 3.3e-17 93.2 214 39.3
THA.LOC104819740 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 3.3e-17 93.2 205 38.5
TAR628G1529 Trochodendron aralioides HOM05D003331 ORTHO05D003264 3.3e-17 93.2 205 36.6
Cfa007016 Carpinus fangiana HOM05D003331 ORTHO05D003264 1.3e-16 91.3 209 38.3
Duzib093G0576 Durio zibethinus HOM05D003331 ORTHO05D003264 1.3e-16 91.3 205 39.0
AT4G35900 Arabidopsis thaliana HOM05D003331 ORTHO05D003264 1.6e-16 90.9 209 37.3
Ciclev10003845m.g Citrus clementina HOM05D003331 ORTHO05D003264 1.6e-16 90.9 211 39.8
Gorai.007G191800 Gossypium raimondii HOM05D003331 ORTHO05D003264 6.2e-16 89.0 203 38.4
CARHR244290 Cardamine hirsuta HOM05D003331 ORTHO05D003264 8.2e-16 88.6 205 45.4
Duzib264G0309 Durio zibethinus HOM05D003331 ORTHO05D003264 8.2e-16 88.6 203 37.9
Gohir.A11G172900 Gossypium hirsutum HOM05D003331 ORTHO05D003264 8.2e-16 88.6 201 39.3
CiPaw.08G127600 Carya illinoinensis HOM05D003331 ORTHO05D003264 1.1e-15 88.2 210 37.1
MBI08_g06420_MAGBIO Magnolia biondii HOM05D003331 ORTHO05D003264 1.8e-15 87.4 218 37.2
Aa31LG6G12860 Aethionema arabicum HOM05D003331 ORTHO05D003264 3.1e-15 86.7 209 37.3
Nn2g14480 Nelumbo nucifera HOM05D003331 ORTHO05D003264 3.1e-15 86.7 210 36.2
TAR625G0644 Trochodendron aralioides HOM05D003331 ORTHO05D003264 3.1e-15 86.7 202 37.1
BcaC01g00527 Brassica carinata HOM05D003331 ORTHO05D003264 4.1e-15 86.3 211 38.4
Gohir.D11G179900 Gossypium hirsutum HOM05D003331 ORTHO05D003264 4.1e-15 86.3 201 38.3
BolC3t20356H Brassica oleracea HOM05D003331 ORTHO05D003264 5.3e-15 85.9 211 37.9
Thhalv10025822m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 5.3e-15 85.9 211 37.9
Sp7g33680 Schrenkiella parvula HOM05D003331 ORTHO05D003264 5.3e-15 85.9 207 37.2
COL.COLO4_22478 Corchorus olitorius HOM05D003331 ORTHO05D003264 6.9e-15 85.5 202 36.6
Manes.18G012121 Manihot esculenta HOM05D003331 ORTHO05D003264 2.0e-14 84.0 206 37.9
C03p80970 Brassica napus HOM05D003331 ORTHO05D003264 2.6e-14 83.6 211 38.4
THA.LOC104807508 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 3.4e-14 83.2 206 37.4
A08p21610 Brassica napus HOM05D003331 ORTHO05D003264 5.8e-14 82.4 218 38.1
BraA08t34108Z Brassica rapa HOM05D003331 ORTHO05D003264 5.8e-14 82.4 218 38.1
BcaNung00784 Brassica carinata HOM05D003331 ORTHO05D003264 7.6e-14 82.0 208 36.5
C01p03140 Brassica napus HOM05D003331 ORTHO05D003264 7.6e-14 82.0 208 36.5
BolC1t00299H Brassica oleracea HOM05D003331 ORTHO05D003264 7.6e-14 82.0 208 36.5
Carub.0007s0433 Capsella rubella HOM05D003331 ORTHO05D003264 1.0e-13 81.6 209 35.9
Carub.0003s3191 Capsella rubella HOM05D003331 ORTHO05D003264 1.7e-13 80.9 209 36.4
Haze_03715 Corylus avellana HOM05D003331 ORTHO05D003264 5.0e-13 79.3 204 38.2
Dinv08561 Davidia involucrata HOM05D003331 ORTHO05D003264 6.5e-13 79.0 205 38.0
Gohir.D05G187300 Gossypium hirsutum HOM05D003331 ORTHO05D003264 6.5e-13 79.0 204 36.3
Gohir.A02G173200 Gossypium hirsutum HOM05D003331 ORTHO05D003264 8.4e-13 78.6 203 40.9
Hma1.2p1_0561F.1_g178920 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 1.4e-12 77.8 205 36.6
A01p02810 Brassica napus HOM05D003331 ORTHO05D003264 2.5e-12 77.0 211 36.5
BraA01t00264Z Brassica rapa HOM05D003331 ORTHO05D003264 2.5e-12 77.0 211 36.5
Gorai.009G192500 Gossypium raimondii HOM05D003331 ORTHO05D003264 2.5e-12 77.0 204 35.8
Gohir.A05G184500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 3.2e-12 76.6 204 34.8
BcaNung04885 Brassica carinata HOM05D003331 ORTHO05D003264 4.2e-12 76.3 216 35.6
C07p61400 Brassica napus HOM05D003331 ORTHO05D003264 5.5e-12 75.9 207 36.2
CiPaw.07G145300 Carya illinoinensis HOM05D003331 ORTHO05D003264 7.1e-12 75.5 204 36.3
TWI09G0177 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 7.1e-12 75.5 203 34.5
BolC7t46566H Brassica oleracea HOM05D003331 ORTHO05D003264 2.1e-11 73.9 207 36.2
CANSAT01G0941 Cannabis sativa HOM05D003331 ORTHO05D003264 2.1e-11 73.9 209 35.9
PGR102G0808 Punica granatum HOM05D003331 ORTHO05D003264 2.7e-11 73.6 209 35.9
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.8e-10 70.9 169 33.7
CAN.G225.18 Capsicum annuum HOM05D000004 ORTHO05D000002 3.0e-10 70.1 210 32.9
GSVIVG01009970001 Vitis vinifera HOM05D003331 ORTHO05D003264 3.9e-10 69.7 201 33.3
Cpa.g.sc26.287 Carica papaya HOM05D003331 ORTHO05D003264 5.1e-10 69.3 210 38.1
Aqoxy6G02126 Aquilegia oxysepala HOM05D003331 ORTHO05D003264 1.5e-09 67.8 214 31.3
AT2G17770 Arabidopsis thaliana HOM05D003331 ORTHO05D003264 1.5e-09 67.8 204 39.7
HPP92_022184 Vanilla planifolia HOM05D003331 ORTHO05D003264 1.5e-09 67.8 220 34.1
Lj2g0025662 Lotus japonicus HOM05D003331 ORTHO05D003264 1.9e-09 67.4 213 34.3
A03p63930 Brassica napus HOM05D003331 ORTHO05D003264 2.5e-09 67.0 210 34.3
BraA03t15462Z Brassica rapa HOM05D003331 ORTHO05D003264 2.5e-09 67.0 210 34.3
Gohir.D03G006700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 2.5e-09 67.0 115 45.2
Nitab4.5_0002337g0180 Nicotiana tabacum HOM05D003331 ORTHO05D003264 2.5e-09 67.0 202 30.7
TWI53G1588 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 4.3e-09 66.2 205 36.1
AL3G50780 Arabidopsis lyrata HOM05D003331 ORTHO05D003264 7.4e-09 65.5 214 32.2
A09p11560 Brassica napus HOM05D003331 ORTHO05D003264 7.4e-09 65.5 206 32.0
CARHR108160 Cardamine hirsuta HOM05D003331 ORTHO05D003264 7.4e-09 65.5 205 37.6
GSVIVG01006332001 Vitis vinifera HOM05D003331 ORTHO05D003264 9.7e-09 65.1 149 34.2
Gohir.A01G109700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.3e-08 64.7 202 32.2
Gorai.003G007000 Gossypium raimondii HOM05D003331 ORTHO05D003264 1.3e-08 64.7 115 44.3
HPP92_022194 Vanilla planifolia HOM05D003331 ORTHO05D003264 1.6e-08 64.3 220 33.2
FvH4_2g38080 Fragaria vesca HOM05D003331 ORTHO05D003264 2.2e-08 63.9 214 33.2
Sopen02g012950 Solanum pennellii HOM05D003331 ORTHO05D003264 2.2e-08 63.9 207 31.4
Cc07_g11170 Coffea canephora HOM05D003331 ORTHO05D003264 2.8e-08 63.5 213 34.3
PGSC0003DMG400023897 Solanum tuberosum HOM05D003331 ORTHO05D003264 4.8e-08 62.8 205 33.2
RcHm_v2.0_Chr2g0098731 Rosa chinensis HOM05D003331 ORTHO05D003264 6.3e-08 62.4 217 32.7
Actinidia02367 Actinidia chinensis HOM05D003331 ORTHO05D003264 1.4e-07 61.2 212 31.1
BcaB03g16550 Brassica carinata HOM05D003331 ORTHO05D003264 1.4e-07 61.2 203 32.0
Gohir.D01G096500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.4e-07 61.2 202 31.7
Gorai.002G122200 Gossypium raimondii HOM05D003331 ORTHO05D003264 1.4e-07 61.2 202 31.7
CiPaw.08G068400 Carya illinoinensis HOM05D003331 ORTHO05D003264 1.8e-07 60.8 115 41.7
CAN.G890.4 Capsicum annuum HOM05D003331 ORTHO05D003264 2.4e-07 60.5 206 31.1
Thhalv10023128m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 2.4e-07 60.5 207 32.4
FAN20G2542 Fragaria x ananassa HOM05D003331 ORTHO05D003264 3.1e-07 60.1 214 33.2
Nitab4.5_0000188g0190 Nicotiana tabacum HOM05D003331 ORTHO05D003264 3.1e-07 60.1 208 30.8
Oeu020389.1 Olea europaea HOM05D003331 ORTHO05D003264 3.1e-07 60.1 208 33.2
Prupe.1G361100 Prunus persica HOM05D003331 ORTHO05D003264 3.1e-07 60.1 223 36.8
BcaNung05055 Brassica carinata HOM05D003331 ORTHO05D003264 4.1e-07 59.7 204 31.9
Psat2g152560 Pisum sativum HOM05D003331 ORTHO05D003264 4.1e-07 59.7 214 36.4
BraA09t36795Z Brassica rapa HOM05D003331 ORTHO05D003264 5.3e-07 59.3 207 34.3
Potri.002G018400 Populus trichocarpa HOM05D003331 ORTHO05D003264 5.3e-07 59.3 202 32.2
BcaB07g31705 Brassica carinata HOM05D003331 ORTHO05D003264 6.9e-07 58.9 207 30.4
VMungo1215G2112 Vigna mungo HOM05D003331 ORTHO05D003264 9.0e-07 58.5 204 32.4
Gorai.009G269300 Gossypium raimondii HOM05D003331 ORTHO05D003264 2.0e-06 57.4 203 32.5
Nitab4.5_0001789g0110 Nicotiana tabacum HOM05D003331 ORTHO05D003264 2.0e-06 57.4 204 29.9
Sp3g31180 Schrenkiella parvula HOM05D003331 ORTHO05D003264 2.0e-06 57.4 202 30.7
Hma1.2p1_0315F.1_g122420 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 2.6e-06 57.0 205 37.1
BraA09t36802Z Brassica rapa HOM05D003331 ORTHO05D003264 3.4e-06 56.6 207 35.3
CsaV3_3G000600 Cucumis sativus L. HOM05D003331 ORTHO05D003264 3.4e-06 56.6 206 31.1
MD15G1240800 Malus domestica HOM05D003331 ORTHO05D003264 4.5e-06 56.2 221 30.8
BcaC04g22944 Brassica carinata HOM05D003331 ORTHO05D003264 5.9e-06 55.8 206 35.9
C09p13610 Brassica napus HOM05D003331 ORTHO05D003264 5.9e-06 55.8 206 35.9
BolC9t54251H Brassica oleracea HOM05D003331 ORTHO05D003264 5.9e-06 55.8 206 35.9
RcHm_v2.0_Chr6g0303481 Rosa chinensis HOM05D003331 ORTHO05D003264 7.7e-06 55.5 222 30.6


User provided reference genes

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