Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.2418 Acer truncatum HOM05D007440 ORTHO05D009418 7.9e-61 236.9 116 100.0
Atru.chr12.1704 Acer truncatum HOM05D007440 ORTHO05D009418 3.8e-39 164.9 160 60.0
Nitab4.5_0006566g0010 Nicotiana tabacum HOM05D007440 ORTHO05D009418 7.2e-30 134.0 121 61.2
Peaxi162Scf00017g00002 Petunia axillaris HOM05D007440 ORTHO05D009418 8.0e-29 130.6 121 57.0
Manes.18G121350 Manihot esculenta HOM05D007440 ORTHO05D009418 6.3e-26 120.9 162 45.1
Nitab4.5_0000219g0060 Nicotiana tabacum HOM05D007440 ORTHO05D009418 6.3e-26 120.9 161 47.2
Ciclev10024582m.g Citrus clementina HOM05D007440 ORTHO05D009418 1.4e-25 119.8 160 47.5
CiPaw.03G017000 Carya illinoinensis HOM05D007440 ORTHO05D009418 4.1e-25 118.2 160 46.2
Thecc.08G172800 Theobroma cacao HOM05D007440 ORTHO05D009418 9.1e-25 117.1 159 46.5
QL09p004054 Quercus lobata HOM05D007440 ORTHO05D009418 1.6e-24 116.3 160 45.0
Actinidia29398 Actinidia chinensis HOM05D007440 ORTHO05D009418 5.9e-24 114.4 159 44.7
CSS0017361 Camellia sinensis var. sinensis HOM05D007440 ORTHO05D009418 1.7e-23 112.8 160 44.4
FAN04G2515 Fragaria x ananassa HOM05D007440 ORTHO05D009418 2.2e-23 112.5 160 44.4
Dinv41796 Davidia involucrata HOM05D007440 ORTHO05D009418 2.9e-23 112.1 163 42.9
FAN18G0056 Fragaria x ananassa HOM05D007440 ORTHO05D009418 5.0e-23 111.3 160 43.8
Hma1.2p1_0708F.1_g207100 Hydrangea macrophylla HOM05D007440 ORTHO05D009418 5.0e-23 111.3 160 45.0
PGSC0003DMG402002240 Solanum tuberosum HOM05D007440 ORTHO05D009418 5.0e-23 111.3 160 44.4
TAR381G0685 Trochodendron aralioides HOM05D007440 ORTHO05D009418 5.0e-23 111.3 161 44.1
GSVIVG01036437001 Vitis vinifera HOM05D007440 ORTHO05D009418 5.0e-23 111.3 160 44.4
Cfa008111 Carpinus fangiana HOM05D007440 ORTHO05D009418 6.5e-23 110.9 160 43.8
MELO3C008079.2 Cucumis melo HOM05D007440 ORTHO05D009418 8.5e-23 110.5 165 44.2
Nn1g02997 Nelumbo nucifera HOM05D007440 ORTHO05D009418 8.5e-23 110.5 164 42.7
PGR031G3126 Punica granatum HOM05D007440 ORTHO05D009418 1.1e-22 110.2 159 44.0
Eucgr.H00023 Eucalyptus grandis HOM05D007440 ORTHO05D009418 2.5e-22 109.0 157 42.7
ClCG11G008830 Citrullus lanatus HOM05D007440 ORTHO05D009418 3.2e-22 108.6 165 43.6
Potri.019G076200 Populus trichocarpa HOM05D007440 ORTHO05D009418 3.2e-22 108.6 159 42.8
RcHm_v2.0_Chr7g0230881 Rosa chinensis HOM05D007440 ORTHO05D009418 4.2e-22 108.2 159 43.4
MD15G1399400 Malus domestica HOM05D007440 ORTHO05D009418 5.5e-22 107.8 159 44.7
RcHm_v2.0_Chr7g0224381 Rosa chinensis HOM05D007440 ORTHO05D009418 5.5e-22 107.8 159 42.8
Lj9C701T14 Lonicera japonica HOM05D007440 ORTHO05D009418 7.2e-22 107.5 152 45.4
TWI23G1187 Tripterygium wilfordii HOM05D007440 ORTHO05D009418 7.2e-22 107.5 161 44.7
Gohir.A05G252301 Gossypium hirsutum HOM05D007440 ORTHO05D009418 9.4e-22 107.1 160 44.4
Gohir.D05G254100 Gossypium hirsutum HOM05D007440 ORTHO05D009418 9.4e-22 107.1 160 44.4
Gorai.009G265700 Gossypium raimondii HOM05D007440 ORTHO05D009418 9.4e-22 107.1 160 44.4
Aqoxy6G00075 Aquilegia oxysepala HOM05D007440 ORTHO05D009418 2.1e-21 105.9 160 43.8
Lsat_1_v5_gn_1_25281 Lactuca sativa HOM05D007440 ORTHO05D009418 2.1e-21 105.9 174 42.0
Cpa.g.sc21.56 Carica papaya HOM05D007440 ORTHO05D009418 2.7e-21 105.5 160 45.0
Psat7g227720 Pisum sativum HOM05D007440 ORTHO05D009418 2.7e-21 105.5 159 43.4
CsaV3_2G033090 Cucumis sativus L. HOM05D007440 ORTHO05D009418 3.6e-21 105.1 165 42.4
Cc03_g16220 Coffea canephora HOM05D007440 ORTHO05D009418 6.1e-21 104.4 160 41.2
HanXRQChr02g0037061 Helianthus annuus HOM05D007440 ORTHO05D009418 8.0e-21 104.0 159 43.4
Sed0012539 Sechium edule HOM05D007440 ORTHO05D009418 8.0e-21 104.0 161 41.6
SalBow6G1672 Salvia bowleyana HOM05D007440 ORTHO05D009418 4.0e-20 101.7 161 41.0
Solyc12g017690.3 Solanum lycopersicum HOM05D007440 ORTHO05D009418 5.2e-20 101.3 160 40.6
ATR1089G110 Amborella trichopoda HOM05D007440 ORTHO05D009418 6.8e-20 100.9 161 41.6
Migut.N03008 Erythranthe guttata HOM05D007440 ORTHO05D009418 6.8e-20 100.9 164 40.9
Rhsim02G0174300 Rhododendron simsii HOM05D007440 ORTHO05D009418 6.8e-20 100.9 154 42.2
Sopen12g008470 Solanum pennellii HOM05D007440 ORTHO05D009418 6.8e-20 100.9 160 40.6
arahy.Tifrunner.gnm1.ann1.E07HZ8 Arachis hypogaea HOM05D007440 ORTHO05D009418 1.2e-19 100.1 154 42.9
Lalb_Chr17g0336871 Lupinus albus HOM05D007440 ORTHO05D009418 1.2e-19 100.1 159 41.5
Hund26630 Selenicereus undatus HOM05D007440 ORTHO05D009418 1.2e-19 100.1 159 41.5
arahy.Tifrunner.gnm1.ann1.YQ4984 Arachis hypogaea HOM05D007440 ORTHO05D009418 1.5e-19 99.8 154 42.9
Oeu061891.1 Olea europaea HOM05D007440 ORTHO05D009418 1.5e-19 99.8 160 41.2
ECA247G2087 Erigeron canadensis HOM05D007440 ORTHO05D009418 2.0e-19 99.4 155 42.6
TPR.G34135 Trifolium pratense HOM05D007440 ORTHO05D009418 2.0e-19 99.4 159 40.3
Ca_12759_v3 Cicer arietinum L. HOM05D007440 ORTHO05D009418 2.6e-19 99.0 159 40.9
Lj3g0019924 Lotus japonicus HOM05D007440 ORTHO05D009418 5.7e-19 97.8 154 42.2
CANSAT25G0816 Cannabis sativa HOM05D007440 ORTHO05D009418 7.5e-19 97.4 162 39.5
Sabra19G0086600 Salix brachista HOM05D007440 ORTHO05D009418 7.5e-19 97.4 166 39.2
SGA_v2.0_scaffold19G08914 Striga asiatica HOM05D007440 ORTHO05D009418 1.7e-18 96.3 165 42.4
PSO170G3813 Papaver somniferum HOM05D007440 ORTHO05D009418 4.8e-18 94.7 161 39.8
Glyma.13G000800 Glycine max HOM05D007440 ORTHO05D009418 6.3e-18 94.4 157 39.5
Medtr4g031180 Medicago truncatula HOM05D007440 ORTHO05D009418 8.3e-18 94.0 159 41.5
Haze_13927 Corylus avellana HOM05D007440 ORTHO05D009418 1.4e-17 93.2 125 44.0
CDE05G2917 Ceratophyllum demersum HOM05D007440 ORTHO05D009418 2.4e-17 92.4 161 40.4
CSS0018984 Camellia sinensis var. sinensis HOM05D007440 ORTHO05D009418 2.0e-16 89.4 125 43.2
FAN08G1847 Fragaria x ananassa HOM05D007440 ORTHO05D009418 2.0e-16 89.4 150 41.3
HPP92_004660 Vanilla planifolia HOM05D007440 ORTHO05D009418 2.7e-16 89.0 160 38.1
Phvul.011G216600 Phaseolus vulgaris HOM05D007440 ORTHO05D009418 1.3e-15 86.7 156 37.8
FvH4_5g32910 Fragaria vesca HOM05D007440 ORTHO05D009418 2.9e-15 85.5 89 55.1
Os10g0141900 Oryza sativa ssp. japonica HOM05D007440 ORTHO05D009418 2.9e-15 85.5 156 39.1
THA.LOC104810378 Tarenaya hassleriana HOM05D007440 ORTHO05D009418 2.9e-15 85.5 167 36.5
vmacro11038 Vaccinium macrocarpon HOM05D007440 ORTHO05D009418 6.5e-15 84.3 125 40.8
MBI03_g14514_MAGBIO Magnolia biondii HOM05D007440 ORTHO05D009418 8.5e-15 84.0 86 58.1
Aa31LG4G9050 Aethionema arabicum HOM05D007440 ORTHO05D009418 5.5e-14 81.3 153 37.9
Prupe.1G546900 Prunus persica HOM05D007440 ORTHO05D009418 5.5e-14 81.3 82 61.0
Lsat_1_v5_gn_7_9441 Lactuca sativa HOM05D007440 ORTHO05D009418 1.2e-13 80.1 127 43.3
SMO347G0497 Selaginella moellendorffii HOM05D007440 ORTHO05D009418 8.3e-10 67.4 159 30.8
CAN.G8.41 Capsicum annuum HOM05D007440 ORTHO05D009418 5.4e-09 64.7 115 37.4
DCAR_002184 Daucus carota HOM05D007440 ORTHO05D004363 7.0e-09 64.3 83 48.2
Pp3c17_10270 Physcomitrium patens HOM05D007440 ORTHO05D009418 2.0e-08 62.8 165 30.9
AagrBONN_evm.TU.Sc2ySwM_362.1381 Anthoceros agrestis HOM05D007440 ORTHO05D009418 5.9e-08 61.2 160 29.4
Zm00001eb026400 Zea mays HOM05D007440 ORTHO05D009418 5.5e-06 54.7 149 32.2


User provided reference genes

Program Settings