Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 9.1e-47 189.9 96 100.0
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 3.7e-40 167.9 100 89.0
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 1.1e-39 166.4 96 86.5
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 1.1e-39 166.4 96 85.4
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 1.8e-39 165.6 100 88.0
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 5.4e-39 164.1 96 85.4
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 9.2e-39 163.3 96 84.4
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 1.2e-38 162.9 100 87.0
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 1.6e-38 162.5 100 85.0
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 3.5e-38 161.4 96 83.3
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 4.5e-38 161.0 100 87.0
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 4.5e-38 161.0 100 87.0
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 5.9e-38 160.6 100 85.0
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 1.0e-37 159.8 100 84.0
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 1.0e-37 159.8 97 85.6
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 1.3e-37 159.5 96 81.2
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 1.7e-37 159.1 97 82.5
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 2.9e-37 158.3 97 81.4
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 3.9e-37 157.9 96 83.3
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 6.6e-37 157.1 100 83.0
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 1.1e-36 156.4 97 83.5
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 1.1e-36 156.4 99 83.8
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 1.9e-36 155.6 97 82.5
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 2.5e-36 155.2 97 80.4
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 2.5e-36 155.2 97 82.5
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 2.5e-36 155.2 98 84.7
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 3.3e-36 154.8 98 79.6
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 3.3e-36 154.8 97 80.4
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.3e-36 154.8 99 79.8
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 3.3e-36 154.8 96 80.2
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 4.3e-36 154.5 96 78.1
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 4.3e-36 154.5 98 84.7
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 4.3e-36 154.5 98 84.7
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 4.3e-36 154.5 97 82.5
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 5.6e-36 154.1 96 77.1
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.6e-36 154.1 96 77.1
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 7.3e-36 153.7 98 83.7
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 7.3e-36 153.7 100 79.0
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 7.3e-36 153.7 99 80.8
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 9.5e-36 153.3 96 78.1
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 9.5e-36 153.3 97 84.5
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 9.5e-36 153.3 96 77.1
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 1.2e-35 152.9 96 79.2
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 1.2e-35 152.9 98 77.6
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 1.2e-35 152.9 99 78.8
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.6e-35 152.5 96 76.0
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.1e-35 152.1 96 76.0
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.1e-35 152.1 96 76.0
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.1e-35 152.1 98 84.7
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 2.1e-35 152.1 97 81.4
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 2.8e-35 151.8 97 77.3
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 3.6e-35 151.4 98 76.5
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 4.7e-35 151.0 95 81.1
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 4.7e-35 151.0 96 75.0
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 6.1e-35 150.6 97 80.4
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 8.0e-35 150.2 97 76.3
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 8.0e-35 150.2 97 76.3
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 8.0e-35 150.2 97 76.3
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 8.0e-35 150.2 97 76.3
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 8.0e-35 150.2 97 76.3
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 8.0e-35 150.2 101 79.2
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 8.0e-35 150.2 99 81.8
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 8.0e-35 150.2 98 79.6
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 8.0e-35 150.2 98 79.6
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 8.0e-35 150.2 97 78.4
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 1.4e-34 149.4 97 76.3
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 1.4e-34 149.4 100 79.0
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 1.8e-34 149.1 97 75.3
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 1.8e-34 149.1 97 75.3
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 1.8e-34 149.1 97 75.3
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 2.3e-34 148.7 97 75.3
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 3.1e-34 148.3 98 74.5
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 4.0e-34 147.9 97 74.2
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 5.2e-34 147.5 98 79.6
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 6.8e-34 147.1 100 79.0
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 6.8e-34 147.1 98 74.5
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 8.9e-34 146.7 97 75.3
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 8.9e-34 146.7 102 78.4
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 1.2e-33 146.4 97 74.2
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 1.5e-33 146.0 97 75.3
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 1.5e-33 146.0 97 75.3
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 1.5e-33 146.0 97 74.2
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 1.5e-33 146.0 97 75.3
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 1.5e-33 146.0 97 75.3
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 1.5e-33 146.0 97 75.3
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 1.5e-33 146.0 97 74.2
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 2.0e-33 145.6 97 75.3
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 2.0e-33 145.6 97 75.3
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 2.0e-33 145.6 95 77.9
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 2.0e-33 145.6 100 76.0
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 2.0e-33 145.6 100 76.0
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 2.6e-33 145.2 98 73.5
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 3.4e-33 144.8 98 77.6
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 3.4e-33 144.8 98 73.5
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.4e-33 144.8 98 75.5
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.4e-33 144.8 98 75.5
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 5.8e-33 144.1 98 78.6
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 7.5e-33 143.7 97 75.3
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 9.8e-33 143.3 98 77.6
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 9.8e-33 143.3 98 77.6
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 1.7e-32 142.5 107 71.0
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 1.7e-32 142.5 104 76.9
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 1.7e-32 142.5 98 76.5
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 1.7e-32 142.5 98 76.5
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 2.9e-32 141.7 102 72.5
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.9e-32 141.7 88 78.4
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 6.4e-32 140.6 96 74.0
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 6.4e-32 140.6 96 74.0
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.1e-31 139.8 94 79.8
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 1.4e-31 139.4 100 76.0
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 2.4e-31 138.7 88 75.0
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 2.4e-31 138.7 121 64.5
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 5.4e-31 137.5 98 71.4
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 9.2e-31 136.7 94 69.1
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 1.6e-30 136.0 98 72.4
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 2.7e-30 135.2 99 71.7
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.7e-30 135.2 98 71.4
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.7e-30 135.2 98 71.4
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 3.5e-30 134.8 103 71.8
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 3.5e-30 134.8 98 69.4
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 4.6e-30 134.4 98 70.4
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 6.0e-30 134.0 91 74.7
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 7.8e-30 133.7 89 75.3
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 1.0e-29 133.3 98 73.5
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 1.3e-29 132.9 100 73.0
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 2.3e-29 132.1 98 68.4
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 2.3e-29 132.1 77 84.4
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 3.0e-29 131.7 102 73.5
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 3.0e-29 131.7 95 71.6
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 3.9e-29 131.3 73 84.9
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.5e-28 129.4 96 69.8
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 3.3e-28 128.3 73 83.6
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 3.3e-28 128.3 73 83.6
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 3.3e-28 128.3 73 83.6
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 4.3e-28 127.9 96 64.6
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 4.3e-28 127.9 156 51.3
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 5.6e-28 127.5 97 70.1
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 2.1e-27 125.6 124 61.3
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 2.1e-27 125.6 93 69.9
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 3.6e-27 124.8 107 62.6
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 2.3e-26 122.1 78 76.9
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 3.1e-26 121.7 97 68.0
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 6.8e-26 120.6 97 63.9
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 8.9e-26 120.2 95 62.1
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 1.2e-25 119.8 97 63.9
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 6.4e-24 114.0 74 79.7
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 4.6e-22 107.8 63 84.1
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 4.6e-22 107.8 82 72.0
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 2.3e-21 105.5 59 83.1
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 1.5e-20 102.8 85 60.0
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 3.4e-17 91.7 61 67.2
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 1.6e-11 72.8 91 44.0
Pp3c19_1780 Physcomitrium patens HOM05D004752 ORTHO05D005523 1.8e-10 69.3 84 44.0
Mapoly0001s0236 Marchantia polymorpha HOM05D004752 ORTHO05D005523 6.8e-10 67.4 103 42.7
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 1.2e-09 66.6 60 56.7
Psat2g095760 Pisum sativum HOM05D000552 ORTHO05D005523 8.4e-08 60.5 52 57.7


User provided reference genes

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