Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.2056 Acer truncatum HOM05D001162 ORTHO05D001218 5.1e-48 194.1 101 100.0
Atru.chr1.3780 Acer truncatum HOM05D001162 ORTHO05D001218 2.8e-22 108.6 90 70.0
Duzib192G0337 Durio zibethinus HOM05D001162 ORTHO05D001218 1.1e-18 96.7 90 63.3
Ciclev10024908m.g Citrus clementina HOM05D001162 ORTHO05D001218 1.9e-18 95.9 91 63.7
Duzib235G0695 Durio zibethinus HOM05D001162 ORTHO05D001218 2.7e-17 92.0 89 59.6
Thecc.06G113500 Theobroma cacao HOM05D001162 ORTHO05D001218 4.7e-17 91.3 90 60.0
Duzib160G0505 Durio zibethinus HOM05D001162 ORTHO05D001218 1.8e-16 89.4 90 58.9
Manes.04G139600 Manihot esculenta HOM05D001162 ORTHO05D001218 8.8e-16 87.0 91 57.1
Dinv37914 Davidia involucrata HOM05D001162 ORTHO05D001218 9.7e-15 83.6 87 58.6
Haze_15950 Corylus avellana HOM05D001162 ORTHO05D001218 1.3e-14 83.2 91 58.2
Gohir.D03G055900 Gossypium hirsutum HOM05D001162 ORTHO05D001218 4.8e-14 81.3 80 60.0
COL.COLO4_38600 Corchorus olitorius HOM05D001162 ORTHO05D001218 1.4e-13 79.7 91 54.9
Eucgr.J02860 Eucalyptus grandis HOM05D001162 ORTHO05D001218 1.4e-13 79.7 91 52.7
Gohir.A02G114900 Gossypium hirsutum HOM05D001162 ORTHO05D001218 1.4e-13 79.7 78 60.3
Cpa.g.sc131.51 Carica papaya HOM05D001162 ORTHO05D001218 1.8e-13 79.3 91 53.8
Sc12g0006290 Simmondsia chinensis HOM05D001162 ORTHO05D001218 1.8e-13 79.3 91 51.6
CiPaw.02G140100 Carya illinoinensis HOM05D001162 ORTHO05D001218 3.1e-13 78.6 91 54.9
Hma1.2p1_0388F.1_g142340 Hydrangea macrophylla HOM05D001162 ORTHO05D001218 3.1e-13 78.6 89 55.1
Manes.11G026500 Manihot esculenta HOM05D001162 ORTHO05D001218 3.1e-13 78.6 89 55.1
Dinv30379 Davidia involucrata HOM05D001162 ORTHO05D001218 4.1e-13 78.2 87 56.3
Potri.001G201000 Populus trichocarpa HOM05D001162 ORTHO05D001218 4.1e-13 78.2 91 56.0
Sc04g0002560 Simmondsia chinensis HOM05D001162 ORTHO05D001218 7.0e-13 77.4 92 53.3
CANSAT56G3796 Cannabis sativa HOM05D001162 ORTHO05D001218 9.1e-13 77.0 91 53.8
Actinidia21760 Actinidia chinensis HOM05D001162 ORTHO05D001218 1.2e-12 76.6 85 55.3
TWI75G1499 Tripterygium wilfordii HOM05D001162 ORTHO05D001218 1.2e-12 76.6 91 53.8
TWI79G1175 Tripterygium wilfordii HOM05D001162 ORTHO05D001218 1.2e-12 76.6 90 54.4
vmacro18785 Vaccinium macrocarpon HOM05D001162 ORTHO05D001218 4.5e-12 74.7 90 52.2
Nn8g38861 Nelumbo nucifera HOM05D001162 ORTHO05D001218 5.9e-12 74.3 90 53.3
TAR383G0671 Trochodendron aralioides HOM05D001162 ORTHO05D001218 7.7e-12 73.9 86 55.8
DCAR_026383 Daucus carota HOM05D001162 ORTHO05D001218 1.0e-11 73.6 83 59.0
Cc04_g01950 Coffea canephora HOM05D001162 ORTHO05D001218 1.3e-11 73.2 90 52.2
Glyma.08G193200 Glycine max HOM05D001162 ORTHO05D001218 1.3e-11 73.2 89 48.3
PGR102G2653 Punica granatum HOM05D001162 ORTHO05D001218 1.3e-11 73.2 91 51.6
Glyma.07G010200 Glycine max HOM05D001162 ORTHO05D001218 2.2e-11 72.4 89 47.2
SalBow7G4614 Salvia bowleyana HOM05D001162 ORTHO05D001218 2.2e-11 72.4 90 50.0
TAR626G0565 Trochodendron aralioides HOM05D001162 ORTHO05D001218 2.2e-11 72.4 90 50.0
MSTRG.4768 Avicennia marina HOM05D001162 ORTHO05D001218 2.9e-11 72.0 87 50.6
Lj3g0018514 Lotus japonicus HOM05D001162 ORTHO05D001218 3.8e-11 71.6 89 49.4
Phvul.010G139100 Phaseolus vulgaris HOM05D001162 ORTHO05D001218 6.5e-11 70.9 89 48.3
PGR102G2918 Punica granatum HOM05D001162 ORTHO05D001218 6.5e-11 70.9 90 48.9
Glyma.15G024100 Glycine max HOM05D001162 ORTHO05D001218 8.5e-11 70.5 91 48.4
ClCG09G000670 Citrullus lanatus HOM05D001162 ORTHO05D001218 1.1e-10 70.1 92 48.9
Migut.D00969 Erythranthe guttata HOM05D001162 ORTHO05D001218 1.1e-10 70.1 86 50.0
Gohir.D05G137700 Gossypium hirsutum HOM05D001162 ORTHO05D001218 1.1e-10 70.1 80 53.8
Gorai.003G058700 Gossypium raimondii HOM05D001162 ORTHO05D001218 1.1e-10 70.1 80 52.5
Gorai.009G142100 Gossypium raimondii HOM05D001162 ORTHO05D001218 1.1e-10 70.1 80 53.8
CSS0046354 Camellia sinensis var. sinensis HOM05D001162 ORTHO05D001218 2.5e-10 68.9 84 52.4
MD09G1193400 Malus domestica HOM05D001162 ORTHO05D001218 2.5e-10 68.9 92 51.1
Prupe.3G049800 Prunus persica HOM05D001162 ORTHO05D001218 2.5e-10 68.9 91 46.2
AUR62038134 Chenopodium quinoa HOM05D001162 ORTHO05D001218 3.2e-10 68.6 79 51.9
Gohir.A05G135700 Gossypium hirsutum HOM05D001162 ORTHO05D001218 3.2e-10 68.6 80 53.8
HanXRQChr05g0140151 Helianthus annuus HOM05D001162 ORTHO05D001218 4.2e-10 68.2 86 50.0
Rhsim08G0233300 Rhododendron simsii HOM05D001162 ORTHO05D001218 4.2e-10 68.2 90 50.0
EL10Ac4g09085 Beta vulgaris HOM05D001162 ORTHO05D001218 5.5e-10 67.8 79 50.6
Lj9A519T84 Lonicera japonica HOM05D001162 ORTHO05D001218 5.5e-10 67.8 90 48.9
SGA_v2.0_scaffold68G22926 Striga asiatica HOM05D001162 ORTHO05D001218 5.5e-10 67.8 92 51.1
VMungo0331G0797 Vigna mungo HOM05D001162 ORTHO05D001218 5.5e-10 67.8 89 47.2
GSVIVG01016855001 Vitis vinifera HOM05D001162 ORTHO05D001218 5.5e-10 67.8 91 46.2
CSS0049028 Camellia sinensis var. sinensis HOM05D001162 ORTHO05D001218 7.2e-10 67.4 91 50.5
MELO3C024392.2 Cucumis melo HOM05D001162 ORTHO05D001218 7.2e-10 67.4 93 47.3
Lj5C45T5 Lonicera japonica HOM05D001162 ORTHO05D001218 7.2e-10 67.4 89 51.7
Sed0018575 Sechium edule HOM05D001162 ORTHO05D001218 9.4e-10 67.0 87 48.3
MBI01_g09939_MAGBIO Magnolia biondii HOM05D001162 ORTHO05D001218 1.2e-09 66.6 112 41.1
CiPaw.01G225100 Carya illinoinensis HOM05D001162 ORTHO05D001218 1.6e-09 66.2 66 51.5
AUR62009822 Chenopodium quinoa HOM05D001162 ORTHO05D001218 1.6e-09 66.2 78 51.3
Ca_23317_v3 Cicer arietinum L. HOM05D001162 ORTHO05D001218 1.6e-09 66.2 78 50.0
Peaxi162Scf00038g01521 Petunia axillaris HOM05D001162 ORTHO05D001218 1.6e-09 66.2 87 51.7
Nn6g35482 Nelumbo nucifera HOM05D001162 ORTHO05D001218 3.6e-09 65.1 79 49.4
PSO210G5214 Papaver somniferum HOM05D001162 ORTHO05D001218 4.7e-09 64.7 85 50.6
RcHm_v2.0_Chr2g0143201 Rosa chinensis HOM05D001162 ORTHO05D001218 4.7e-09 64.7 82 53.7
HanXRQChr09g0276461 Helianthus annuus HOM05D001162 ORTHO05D001218 8.0e-09 63.9 88 47.7
Nitab4.5_0008454g0040 Nicotiana tabacum HOM05D001162 ORTHO05D001218 8.0e-09 63.9 86 47.7
Oeu011893.1 Olea europaea HOM05D001162 ORTHO05D001218 8.0e-09 63.9 86 53.5
THA.LOC104815638 Tarenaya hassleriana HOM05D001162 ORTHO05D001218 8.0e-09 63.9 73 50.7
Thhalv10020092m.g Eutrema salsugineum HOM05D001162 ORTHO05D001218 1.0e-08 63.5 72 54.2
Peaxi162Scf00207g01050 Petunia axillaris HOM05D001162 ORTHO05D001218 1.0e-08 63.5 85 49.4
PSO210G6805 Papaver somniferum HOM05D001162 ORTHO05D001218 1.4e-08 63.2 84 48.8
Phvul.005G159600 Phaseolus vulgaris HOM05D001162 ORTHO05D001218 1.4e-08 63.2 93 48.4
Sabra01G0157000 Salix brachista HOM05D001162 ORTHO05D001218 1.4e-08 63.2 62 53.2
MSTRG.22586 Avicennia marina HOM05D001162 ORTHO05D001218 1.8e-08 62.8 84 48.8
CsaV3_7G034810 Cucumis sativus L. HOM05D001162 ORTHO05D001218 1.8e-08 62.8 96 47.9
MD17G1174200 Malus domestica HOM05D001162 ORTHO05D001218 1.8e-08 62.8 86 48.8
Lalb_Chr24g0396381 Lupinus albus HOM05D001162 ORTHO05D001218 2.3e-08 62.4 86 37.2
arahy.Tifrunner.gnm1.ann1.F47PG2 Arachis hypogaea HOM05D001162 ORTHO05D001218 3.0e-08 62.0 89 49.4
arahy.Tifrunner.gnm1.ann1.YL4R3A Arachis hypogaea HOM05D001162 ORTHO05D001218 3.0e-08 62.0 89 49.4
Solyc03g121590.3 Solanum lycopersicum HOM05D001162 ORTHO05D001218 3.0e-08 62.0 89 51.7
Sopen03g040400 Solanum pennellii HOM05D001162 ORTHO05D001218 3.0e-08 62.0 89 51.7
HPP92_006468 Vanilla planifolia HOM05D001162 ORTHO05D001218 3.0e-08 62.0 90 44.4
Lsat_1_v5_gn_1_36080 Lactuca sativa HOM05D001162 ORTHO05D001218 4.0e-08 61.6 84 50.0
Hund20855 Selenicereus undatus HOM05D001162 ORTHO05D001218 4.0e-08 61.6 78 47.4
ECA232G3404 Erigeron canadensis HOM05D001162 ORTHO05D001218 5.2e-08 61.2 80 50.0
Nitab4.5_0000255g0190 Nicotiana tabacum HOM05D001162 ORTHO05D001218 5.2e-08 61.2 87 46.0
Oeu002505.2 Olea europaea HOM05D001162 ORTHO05D001218 5.2e-08 61.2 85 49.4
Hma1.2p1_0496F.1_g165790 Hydrangea macrophylla HOM05D001162 ORTHO05D001218 6.7e-08 60.8 87 49.4
Hma1.2p1_2045F.1_g312371 Hydrangea macrophylla HOM05D001162 ORTHO05D001218 6.7e-08 60.8 87 49.4
MSTRG.9497 Avicennia marina HOM05D001162 ORTHO05D001218 8.8e-08 60.5 87 44.8
Carub.0003s1342 Capsella rubella HOM05D001162 ORTHO05D001218 8.8e-08 60.5 39 76.9
THA.LOC104822639 Tarenaya hassleriana HOM05D001162 ORTHO05D001218 8.8e-08 60.5 90 44.4
arahy.Tifrunner.gnm1.ann1.LPL3F8 Arachis hypogaea HOM05D001162 ORTHO05D001218 1.1e-07 60.1 94 48.9
Potri.003G038900 Populus trichocarpa HOM05D001162 ORTHO05D001218 1.1e-07 60.1 91 46.2
HPP92_007256 Vanilla planifolia HOM05D001162 ORTHO05D001218 1.1e-07 60.1 79 53.2
HPP92_007261 Vanilla planifolia HOM05D001162 ORTHO05D001218 1.1e-07 60.1 79 53.2
AL3G26030 Arabidopsis lyrata HOM05D001162 ORTHO05D001218 1.5e-07 59.7 59 57.6
BcaC01g03970 Brassica carinata HOM05D001162 ORTHO05D001218 1.5e-07 59.7 33 87.9
A03p38510 Brassica napus HOM05D001162 ORTHO05D001218 1.5e-07 59.7 33 87.9
C03p46640 Brassica napus HOM05D001162 ORTHO05D001218 1.5e-07 59.7 33 87.9
BolC3t16927H Brassica oleracea HOM05D001162 ORTHO05D001218 1.5e-07 59.7 33 87.9
BraA03t12998Z Brassica rapa HOM05D001162 ORTHO05D001218 1.5e-07 59.7 33 87.9
Hund18718 Selenicereus undatus HOM05D001162 ORTHO05D001218 1.5e-07 59.7 77 49.4
unitig_62.g23756 Utricularia gibba HOM05D001162 ORTHO05D001218 1.5e-07 59.7 89 46.1
Os01g0575000 Oryza sativa ssp. japonica HOM05D001162 ORTHO05D001218 2.0e-07 59.3 72 44.4
Aqoxy6G01678 Aquilegia oxysepala HOM05D001162 ORTHO05D001218 2.6e-07 58.9 85 43.5
A05p35540 Brassica napus HOM05D001162 ORTHO05D001218 2.6e-07 58.9 60 60.0
QL05p012679 Quercus lobata HOM05D001162 ORTHO05D001218 2.6e-07 58.9 97 42.3
CAN.G1389.20 Capsicum annuum HOM05D001162 ORTHO05D001218 3.3e-07 58.5 89 47.2
CARHR088660 Cardamine hirsuta HOM05D001162 ORTHO05D001218 3.3e-07 58.5 39 71.8
AT3G13870 Arabidopsis thaliana HOM05D001162 ORTHO05D001218 4.4e-07 58.2 62 54.8
BcaC05g29152 Brassica carinata HOM05D001162 ORTHO05D001218 4.4e-07 58.2 33 84.8
C05p53930 Brassica napus HOM05D001162 ORTHO05D001218 4.4e-07 58.2 33 84.8
BolC5t34059H Brassica oleracea HOM05D001162 ORTHO05D001218 4.4e-07 58.2 33 84.8
BraA05t22363Z Brassica rapa HOM05D001162 ORTHO05D001218 4.4e-07 58.2 33 84.8
ECA247G3617 Erigeron canadensis HOM05D001162 ORTHO05D001218 4.4e-07 58.2 88 44.3
Lj3g0008624 Lotus japonicus HOM05D001162 ORTHO05D001218 4.4e-07 58.2 90 45.6
Oeu026750.1 Olea europaea HOM05D001162 ORTHO05D001218 4.4e-07 58.2 75 53.3
Sp3g12090 Schrenkiella parvula HOM05D001162 ORTHO05D001218 4.4e-07 58.2 72 52.8
A03p38470 Brassica napus HOM05D001162 ORTHO05D001218 5.7e-07 57.8 33 81.8
FvH4_6g33350 Fragaria vesca HOM05D001162 ORTHO05D001218 7.5e-07 57.4 80 48.8
FAN02G3396 Fragaria x ananassa HOM05D001162 ORTHO05D001218 7.5e-07 57.4 77 49.4
Glyma.13G350400 Glycine max HOM05D001162 ORTHO05D001218 7.5e-07 57.4 89 46.1
Gohir.A09G080300 Gossypium hirsutum HOM05D001162 ORTHO05D001218 7.5e-07 57.4 80 45.0
FAN09G2603 Fragaria x ananassa HOM05D001162 ORTHO05D001218 9.7e-07 57.0 80 48.8
Medtr8g016310 Medicago truncatula HOM05D001162 ORTHO05D001218 9.7e-07 57.0 78 44.9
BcaB06g25429 Brassica carinata HOM05D001162 ORTHO05D001218 1.3e-06 56.6 56 58.9
FAN14G5741 Fragaria x ananassa HOM05D001162 ORTHO05D001218 1.3e-06 56.6 80 48.8
Lsat_1_v5_gn_4_95121 Lactuca sativa HOM05D001162 ORTHO05D001218 2.2e-06 55.8 83 45.8
Lj6g0019107 Lotus japonicus HOM05D001162 ORTHO05D001218 2.2e-06 55.8 89 42.7
Sabra03G0024800 Salix brachista HOM05D001162 ORTHO05D001218 2.2e-06 55.8 93 41.9
SGA_v2.0_scaffold71G23783 Striga asiatica HOM05D001162 ORTHO05D001218 2.2e-06 55.8 90 43.3
arahy.Tifrunner.gnm1.ann1.WD55VX Arachis hypogaea HOM05D001162 ORTHO05D001218 2.8e-06 55.5 93 45.2
Zm00001eb160200 Zea mays HOM05D001162 ORTHO05D001218 2.8e-06 55.5 74 50.0
Aa31LG8G1040 Aethionema arabicum HOM05D001162 ORTHO05D001218 3.7e-06 55.1 61 54.1
FAN05G5618 Fragaria x ananassa HOM05D001162 ORTHO05D001218 6.3e-06 54.3 80 47.5
HanXRQChr02g0031681 Helianthus annuus HOM05D001162 ORTHO05D001218 6.3e-06 54.3 85 44.7
Nitab4.5_0000549g0060 Nicotiana tabacum HOM05D001162 ORTHO05D001218 8.2e-06 53.9 71 40.8


User provided reference genes

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