Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 2.6e-172 608.6 302 100.0
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 1.5e-124 449.9 241 91.7
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 1.5e-111 406.8 242 80.6
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 4.4e-111 405.2 241 80.9
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 1.5e-108 396.7 250 76.0
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 2.6e-108 396.0 248 76.6
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 1.3e-107 393.7 247 76.5
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 2.9e-107 392.5 242 77.7
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 6.5e-107 391.3 250 75.2
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 8.5e-107 391.0 250 74.8
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 3.2e-106 389.0 271 70.8
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 3.2e-106 389.0 251 73.7
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 5.5e-106 388.3 251 73.7
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 5.5e-106 388.3 250 76.8
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 7.2e-106 387.9 250 74.0
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 7.2e-106 387.9 251 73.3
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 6.1e-105 384.8 245 75.9
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.8e-104 383.3 265 70.9
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 2.3e-104 382.9 242 77.7
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 3.0e-104 382.5 245 73.9
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 3.0e-104 382.5 244 75.4
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 6.7e-104 381.3 245 74.7
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 8.8e-104 380.9 249 73.5
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 8.8e-104 380.9 244 74.2
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 1.5e-103 380.2 245 73.1
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 1.5e-103 380.2 244 75.0
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 3.3e-103 379.0 251 72.9
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 3.3e-103 379.0 250 72.8
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 4.4e-103 378.6 244 74.6
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 4.8e-102 375.2 247 72.9
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 1.8e-101 373.2 242 76.4
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 5.3e-101 371.7 249 71.5
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 1.2e-100 370.5 249 72.3
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 4.5e-100 368.6 246 72.4
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 1.0e-99 367.5 249 71.5
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 5.0e-99 365.2 240 70.0
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 6.5e-99 364.8 236 71.6
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 6.5e-99 364.8 236 73.3
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 1.1e-98 364.0 249 69.5
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 7.2e-98 361.3 241 72.2
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 9.4e-98 360.9 234 71.4
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 9.4e-98 360.9 241 72.2
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 2.7e-97 359.4 257 67.7
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 6.1e-97 358.2 251 68.9
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.0e-96 357.5 242 73.1
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 1.0e-96 357.5 246 69.9
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.8e-96 356.7 242 73.1
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 2.3e-96 356.3 283 63.3
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 1.2e-95 354.0 238 70.2
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 2.6e-95 352.8 238 69.7
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 1.3e-94 350.5 244 70.5
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 2.8e-94 349.4 242 70.7
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 3.7e-94 349.0 248 67.3
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.4e-93 347.1 246 67.9
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 1.8e-93 346.7 234 68.8
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 2.4e-93 346.3 249 67.1
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 3.1e-93 345.9 238 67.2
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 9.1e-93 344.4 238 66.8
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 1.2e-92 344.0 238 67.6
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 1.6e-92 343.6 238 68.1
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 2.0e-92 343.2 241 66.4
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 2.0e-92 343.2 250 68.4
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 1.0e-91 340.9 238 67.2
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 1.0e-91 340.9 240 67.1
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 1.3e-91 340.5 239 66.1
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 5.0e-91 338.6 239 68.2
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 5.0e-91 338.6 234 67.5
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 1.5e-90 337.0 240 65.4
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 2.5e-90 336.3 274 60.6
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 3.2e-90 335.9 242 67.8
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 5.5e-90 335.1 203 78.3
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 7.2e-90 334.7 242 65.7
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 7.2e-90 334.7 244 65.6
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 9.4e-90 334.3 250 66.0
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 9.4e-90 334.3 242 66.5
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 9.4e-90 334.3 242 66.9
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 1.2e-89 334.0 252 62.7
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 1.6e-89 333.6 239 65.7
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 2.1e-89 333.2 204 77.9
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 2.7e-89 332.8 243 65.8
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 1.0e-88 330.9 240 65.8
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 1.8e-88 330.1 206 77.2
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 4.0e-88 328.9 223 70.4
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 7.5e-87 324.7 218 68.8
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 7.5e-87 324.7 200 75.5
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 2.8e-86 322.8 244 63.9
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 2.7e-84 316.2 196 75.0
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 3.8e-83 312.4 234 65.0
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 2.5e-82 309.7 216 69.9
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 2.1e-81 306.6 177 81.9
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 4.7e-81 305.4 260 60.0
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 8.0e-81 304.7 207 67.1
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 8.0e-81 304.7 207 67.1
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 1.8e-80 303.5 267 58.8
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 3.0e-80 302.8 208 68.3
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 3.0e-80 302.8 208 68.3
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 1.2e-79 300.8 208 68.3
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 5.7e-79 298.5 208 67.3
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 5.7e-79 298.5 245 60.8
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 2.9e-78 296.2 234 62.8
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 2.3e-75 286.6 198 66.7
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 6.2e-73 278.5 255 52.5
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 6.2e-73 278.5 252 52.4
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 8.0e-73 278.1 209 63.2
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 3.4e-71 272.7 238 56.7
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 9.8e-71 271.2 253 51.8
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 2.2e-70 270.0 242 59.5
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 4.9e-70 268.9 232 59.1
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 8.3e-70 268.1 239 53.6
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 1.9e-69 266.9 185 68.1
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 7.8e-68 261.5 246 51.2
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 6.6e-67 258.5 211 62.6
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 1.2e-65 254.2 190 62.6
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 2.8e-65 253.1 166 70.5
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 5.2e-64 248.8 198 64.6
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 5.8e-63 245.4 200 56.0
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 2.2e-62 243.4 244 58.2
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 7.1e-61 238.4 168 65.5
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 1.6e-60 237.3 241 53.1
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 6.0e-60 235.3 205 61.0
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 2.5e-58 229.9 174 64.4
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 3.6e-57 226.1 144 72.9
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 8.1e-57 224.9 218 50.5
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-56 224.6 218 50.0
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 9.9e-55 218.0 129 81.4
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 1.1e-53 214.5 214 48.1
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 1.4e-53 214.2 166 66.9
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 3.5e-52 209.5 218 50.5
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.5e-50 204.1 194 51.0
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 5.6e-50 202.2 172 58.1
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 8.1e-49 198.4 189 54.5
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 4.9e-46 189.1 233 45.1
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 2.3e-43 180.3 114 78.1
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 2.5e-42 176.8 192 49.0
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 7.6e-39 165.2 105 72.4
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 7.6e-39 165.2 110 74.5
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 9.9e-39 164.9 219 39.3
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 6.0e-36 155.6 106 65.1
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 2.3e-35 153.7 100 73.0
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 2.3e-35 153.7 109 64.2
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 6.6e-35 152.1 225 43.1
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 5.8e-31 139.0 161 49.1
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 1.2e-23 114.8 161 38.5
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 2.0e-23 114.0 101 53.5
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.3e-17 94.7 67 65.7
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.4e-16 91.3 55 72.7
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 4.5e-15 86.3 65 63.1
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 4.6e-12 76.3 72 51.4
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-11 75.1 81 45.7
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.9e-11 73.2 44 72.7
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 7.4e-10 68.9 107 33.6


User provided reference genes

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