Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.1483 Acer truncatum HOM05D003340 ORTHO05D003775 1.3e-108 396.4 193 100.0
Atru.chr13.1461 Acer truncatum HOM05D003340 ORTHO05D003775 7.3e-27 124.8 66 95.5
Thecc.08G125400 Theobroma cacao HOM05D003340 ORTHO05D003775 3.5e-21 105.9 90 64.4
COL.COLO4_36312 Corchorus olitorius HOM05D003340 ORTHO05D003775 1.7e-20 103.6 63 81.0
Haze_00442 Corylus avellana HOM05D003340 ORTHO05D003775 1.2e-18 97.4 90 57.8
Gohir.A06G044800 Gossypium hirsutum HOM05D003340 ORTHO05D003775 1.6e-18 97.1 93 57.0
Gohir.D06G045300 Gossypium hirsutum HOM05D003340 ORTHO05D003775 1.6e-18 97.1 93 57.0
Gorai.010G050300 Gossypium raimondii HOM05D003340 ORTHO05D003775 1.6e-18 97.1 93 57.0
Duzib093G0952 Durio zibethinus HOM05D003340 ORTHO05D003775 8.1e-18 94.7 64 75.0
TAR381G1109 Trochodendron aralioides HOM05D003340 ORTHO05D003775 8.1e-18 94.7 90 54.4
Nn1g08798 Nelumbo nucifera HOM05D003340 ORTHO05D003775 1.4e-17 94.0 90 54.4
Gohir.D01G180500 Gossypium hirsutum HOM05D003340 ORTHO05D003775 4.0e-17 92.4 62 75.8
Gorai.002G222100 Gossypium raimondii HOM05D003340 ORTHO05D003775 4.0e-17 92.4 62 75.8
Duzib041G0745 Durio zibethinus HOM05D003340 ORTHO05D003775 6.8e-17 91.7 56 80.4
Dinv07220 Davidia involucrata HOM05D003340 ORTHO05D003775 1.2e-16 90.9 100 52.0
Lsat_1_v5_gn_1_10021 Lactuca sativa HOM05D003340 ORTHO05D003775 1.2e-16 90.9 64 65.6
Gohir.A05G268800 Gossypium hirsutum HOM05D003340 ORTHO05D003775 2.0e-16 90.1 62 71.0
Gohir.D05G270700 Gossypium hirsutum HOM05D003340 ORTHO05D003775 2.0e-16 90.1 62 71.0
Gorai.009G283300 Gossypium raimondii HOM05D003340 ORTHO05D003775 2.0e-16 90.1 62 71.0
Nn3g19971 Nelumbo nucifera HOM05D003340 ORTHO05D003775 2.0e-16 90.1 91 54.9
Gohir.A01G189000 Gossypium hirsutum HOM05D003340 ORTHO05D003775 2.6e-16 89.7 60 75.0
Glyma.14G150300 Glycine max HOM05D003340 ORTHO05D003775 3.4e-16 89.4 93 50.5
MD15G1348300 Malus domestica HOM05D003340 ORTHO05D003775 3.4e-16 89.4 94 53.2
Medtr1g030060 Medicago truncatula HOM05D003340 ORTHO05D003775 5.8e-16 88.6 93 51.6
CSS0003781 Camellia sinensis var. sinensis HOM05D003340 ORTHO05D003775 7.5e-16 88.2 64 68.8
CSS0046765 Camellia sinensis var. sinensis HOM05D003340 ORTHO05D003775 7.5e-16 88.2 64 68.8
Ciclev10002808m.g Citrus clementina HOM05D003340 ORTHO05D003775 7.5e-16 88.2 93 54.8
Nn5g28288 Nelumbo nucifera HOM05D003340 ORTHO05D003775 7.5e-16 88.2 93 50.5
Rhsim06G0103500 Rhododendron simsii HOM05D003340 ORTHO05D003775 1.3e-15 87.4 63 71.4
Glyma.13G079000 Glycine max HOM05D003340 ORTHO05D003775 3.7e-15 85.9 93 50.5
MD08G1162700 Malus domestica HOM05D003340 ORTHO05D003775 3.7e-15 85.9 94 50.0
Potri.005G178000 Populus trichocarpa HOM05D003340 ORTHO05D003775 4.9e-15 85.5 93 52.7
Cpa.g.sc64.87 Carica papaya HOM05D003340 ORTHO05D003775 6.4e-15 85.1 66 69.7
Ca_12617_v3 Cicer arietinum L. HOM05D003340 ORTHO05D003775 1.4e-14 84.0 93 49.5
RcHm_v2.0_Chr6g0295821 Rosa chinensis HOM05D003340 ORTHO05D003775 1.4e-14 84.0 100 51.0
Manes.02G163400 Manihot esculenta HOM05D003340 ORTHO05D003775 3.2e-14 82.8 63 69.8
Manes.18G077306 Manihot esculenta HOM05D003340 ORTHO05D003775 3.2e-14 82.8 63 69.8
FAN20G1789 Fragaria x ananassa HOM05D003340 ORTHO05D003775 9.2e-14 81.3 101 48.5
Psat6g041160 Pisum sativum HOM05D003340 ORTHO05D003775 1.2e-13 80.9 93 47.3
Lj7P340T28 Lonicera japonica HOM05D003340 ORTHO05D003775 1.6e-13 80.5 100 49.0
Dinv27312 Davidia involucrata HOM05D000273 ORTHO05D000198 2.1e-13 80.1 61 67.2
Duzib116G0828 Durio zibethinus HOM05D003340 ORTHO05D003775 2.1e-13 80.1 64 65.6
Lj1g0019913 Lotus japonicus HOM05D003340 ORTHO05D003775 2.7e-13 79.7 93 46.2
Potri.002G083600 Populus trichocarpa HOM05D003340 ORTHO05D003775 2.7e-13 79.7 63 63.5
CiPaw.05G221600 Carya illinoinensis HOM05D003340 ORTHO05D003775 3.5e-13 79.3 99 47.5
Sabra02G0065600 Salix brachista HOM05D003340 ORTHO05D003775 3.5e-13 79.3 66 60.6
AUR62014338 Chenopodium quinoa HOM05D003340 ORTHO05D003775 6.0e-13 78.6 100 45.0
AUR62019080 Chenopodium quinoa HOM05D003340 ORTHO05D003775 7.8e-13 78.2 100 44.0
CiPaw.06G030900 Carya illinoinensis HOM05D003340 ORTHO05D003775 1.0e-12 77.8 103 44.7
FAN15G0091 Fragaria x ananassa HOM05D003340 ORTHO05D003775 1.7e-12 77.0 101 47.5
Aqoxy6G00217 Aquilegia oxysepala HOM05D003340 ORTHO05D003775 2.3e-12 76.6 64 60.9
QL09p034593 Quercus lobata HOM05D003340 ORTHO05D003775 2.3e-12 76.6 86 52.3
TPR.G25816 Trifolium pratense HOM05D003340 ORTHO05D003775 2.3e-12 76.6 101 42.6
CAN.G264.5 Capsicum annuum HOM05D003340 ORTHO05D003775 5.1e-12 75.5 90 46.7
Nitab4.5_0001344g0050 Nicotiana tabacum HOM05D003340 ORTHO05D003775 5.1e-12 75.5 63 60.3
PSO170G4666 Papaver somniferum HOM05D003340 ORTHO05D003775 5.1e-12 75.5 67 58.2
EL10Ac1g01010 Beta vulgaris HOM05D003340 ORTHO05D003775 6.6e-12 75.1 100 43.0
PGSC0003DMG400006659 Solanum tuberosum HOM05D003340 ORTHO05D003775 8.6e-12 74.7 90 45.6
VMungo0647G0885 Vigna mungo HOM05D000654 ORTHO05D002330 8.6e-12 74.7 93 44.1
Sed0000027 Sechium edule HOM05D003340 ORTHO05D003775 1.1e-11 74.3 92 50.0
Hma1.2p1_0597F.1_g186580 Hydrangea macrophylla HOM05D003340 ORTHO05D003775 1.5e-11 73.9 53 67.9
Solyc04g071630.3 Solanum lycopersicum HOM05D003340 ORTHO05D003775 1.5e-11 73.9 90 45.6
TWI32G0782 Tripterygium wilfordii HOM05D003340 ORTHO05D003775 1.5e-11 73.9 72 55.6
Sopen04g027620 Solanum pennellii HOM05D003340 ORTHO05D003775 1.9e-11 73.6 90 45.6
ClCG11G015750 Citrullus lanatus HOM05D003340 ORTHO05D003775 4.3e-11 72.4 85 49.4
Lj4P627T24 Lonicera japonica HOM05D003340 ORTHO05D003775 4.3e-11 72.4 66 54.5
Nitab4.5_0001187g0040 Nicotiana tabacum HOM05D003340 ORTHO05D003775 5.6e-11 72.0 63 58.7
Eucgr.F04352 Eucalyptus grandis HOM05D003340 ORTHO05D003775 9.5e-11 71.2 61 60.7
Phvul.008G161200 Phaseolus vulgaris HOM05D003340 ORTHO05D003775 9.5e-11 71.2 87 43.7
GSVIVG01008867001 Vitis vinifera HOM05D003340 ORTHO05D003775 9.5e-11 71.2 74 55.4
Lalb_Chr10g0101671 Lupinus albus HOM05D003340 ORTHO05D003775 1.6e-10 70.5 99 41.4
Peaxi162Scf00079g00248 Petunia axillaris HOM05D003340 ORTHO05D003775 1.6e-10 70.5 63 57.1
Hund26810 Selenicereus undatus HOM05D003340 ORTHO05D003775 1.6e-10 70.5 100 43.0
Oeu017298.1 Olea europaea HOM05D003340 ORTHO05D003775 6.2e-10 68.6 64 56.2
THA.LOC104817332 Tarenaya hassleriana HOM05D003340 ORTHO05D003775 8.1e-10 68.2 67 58.2
Cc10_g11880 Coffea canephora HOM05D003340 ORTHO05D003775 1.1e-09 67.8 94 44.7
MELO3C010478.2 Cucumis melo HOM05D003340 ORTHO05D003775 1.8e-09 67.0 86 48.8
CsaV3_4G028260 Cucumis sativus L. HOM05D003340 ORTHO05D003775 1.8e-09 67.0 86 48.8
PSO528G0096 Papaver somniferum HOM05D003340 ORTHO05D003775 1.8e-09 67.0 70 52.9
CANSAT25G3576 Cannabis sativa HOM05D003340 ORTHO05D003775 3.1e-09 66.2 62 54.8
HanXRQChr04g0125231 Helianthus annuus HOM05D003340 ORTHO05D003775 3.1e-09 66.2 70 51.4
Ah.06g188530 Amaranthus hybridus HOM05D003340 ORTHO05D003775 4.0e-09 65.9 94 44.7
SalBow7G3799 Salvia bowleyana HOM05D003340 ORTHO05D003775 5.2e-09 65.5 67 58.2
Oeu059436.2 Olea europaea HOM05D003340 ORTHO05D003775 2.6e-08 63.2 63 52.4
Aa31LG9G14230 Aethionema arabicum HOM05D003340 ORTHO05D003775 3.4e-08 62.8 56 58.9
SHI08457 Sapria himalayana HOM05D003340 ORTHO05D003775 3.4e-08 62.8 66 51.5
VMungo1309G0419 Vigna mungo HOM05D003340 ORTHO05D003775 3.4e-08 62.8 89 44.9
THA.LOC104806822 Tarenaya hassleriana HOM05D003340 ORTHO05D003775 4.4e-08 62.4 94 42.6
Hund17293 Selenicereus undatus HOM05D003340 ORTHO05D003775 5.8e-08 62.0 101 37.6
MSTRG.25383 Avicennia marina HOM05D003340 ORTHO05D003775 9.9e-08 61.2 65 50.8
Thhalv10029030m.g Eutrema salsugineum HOM05D003340 ORTHO05D003775 9.9e-08 61.2 56 57.1
Glyma.06G113100 Glycine max HOM05D003340 ORTHO05D003775 1.3e-07 60.8 70 50.0
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 2.2e-07 60.1 101 35.6
Migut.C01126 Erythranthe guttata HOM05D003340 ORTHO05D003775 2.9e-07 59.7 65 50.8
GSVIVG01022376001 Vitis vinifera HOM05D003340 ORTHO05D003775 3.7e-07 59.3 59 55.9
CARHR259420 Cardamine hirsuta HOM05D003340 ORTHO05D003775 1.1e-06 57.8 56 53.6
Medtr3g088030 Medicago truncatula HOM05D003340 ORTHO05D003775 1.4e-06 57.4 91 38.5
Lj1g0013118 Lotus japonicus HOM05D003340 ORTHO05D003775 2.4e-06 56.6 97 42.3
AL6G42100 Arabidopsis lyrata HOM05D003340 ORTHO05D003775 3.2e-06 56.2 56 57.1
AT4G08330 Arabidopsis thaliana HOM05D003340 ORTHO05D003775 3.2e-06 56.2 56 57.1
Hma1.2p1_0619F.1_g190390 Hydrangea macrophylla HOM05D003340 ORTHO05D003775 7.1e-06 55.1 81 40.7
Zm00001eb289950 Zea mays HOM05D003340 ORTHO05D003775 9.2e-06 54.7 56 51.8


User provided reference genes

Program Settings