Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.1408 Acer truncatum HOM05D003443 ORTHO05D008640 6.0e-74 280.8 146 100.0
Ciclev10002759m.g Citrus clementina HOM05D003443 ORTHO05D008640 1.2e-50 203.4 141 79.4
Thecc.08G121300 Theobroma cacao HOM05D003443 ORTHO05D008640 1.5e-45 186.4 146 69.2
CiPaw.05G224500 Carya illinoinensis HOM05D003443 ORTHO05D008640 4.9e-44 181.4 148 68.2
Cfa015987 Carpinus fangiana HOM05D003443 ORTHO05D009887 1.9e-43 179.5 148 66.9
QL08p024382 Quercus lobata HOM05D003443 ORTHO05D008640 3.2e-43 178.7 145 64.8
Haze_00480 Corylus avellana HOM05D003443 ORTHO05D008640 1.8e-41 172.9 149 66.4
Cpa.g.sc70.11 Carica papaya HOM05D003443 ORTHO05D008640 5.1e-41 171.4 137 67.2
Sabra02G0067600 Salix brachista HOM05D003443 ORTHO05D008640 5.1e-41 171.4 148 64.9
Manes.18G075200 Manihot esculenta HOM05D003443 ORTHO05D008640 6.7e-41 171.0 149 63.1
MD15G1353300 Malus domestica HOM05D003443 ORTHO05D008640 5.7e-40 167.9 146 62.3
MD03G1200300 Malus domestica HOM05D003443 ORTHO05D008640 7.4e-40 167.5 146 62.3
Gohir.A05G233400 Gossypium hirsutum HOM05D003443 ORTHO05D008640 1.6e-39 166.4 147 63.9
Prupe.1G501600 Prunus persica HOM05D003443 ORTHO05D008640 2.2e-39 166.0 146 61.6
RcHm_v2.0_Chr6g0295401 Rosa chinensis HOM05D003443 ORTHO05D008640 2.2e-39 166.0 143 60.8
Gorai.009G244100 Gossypium raimondii HOM05D003443 ORTHO05D008640 2.8e-39 165.6 145 64.8
GSVIVG01008902001 Vitis vinifera HOM05D003443 ORTHO05D008640 4.8e-39 164.9 134 68.7
Gohir.D05G235800 Gossypium hirsutum HOM05D003443 ORTHO05D008640 8.2e-39 164.1 145 64.1
Dinv40389 Davidia involucrata HOM05D003443 ORTHO05D008640 1.1e-38 163.7 149 61.1
FAN24G2127 Fragaria x ananassa HOM05D003443 ORTHO05D008640 1.4e-38 163.3 143 60.8
FAN15G0021 Fragaria x ananassa HOM05D003443 ORTHO05D008640 3.1e-38 162.2 146 59.6
Psat2g087720 Pisum sativum HOM05D003443 ORTHO05D008640 5.3e-38 161.4 131 67.2
FvH4_2g26530 Fragaria vesca HOM05D003443 ORTHO05D008640 9.0e-38 160.6 143 60.1
AL6G41970 Arabidopsis lyrata HOM05D003443 ORTHO05D008640 1.5e-37 159.8 138 62.3
BcaB01g02870 Brassica carinata HOM05D003443 ORTHO05D008640 2.0e-37 159.5 137 61.3
Potri.002G086200 Populus trichocarpa HOM05D003443 ORTHO05D008640 2.6e-37 159.1 146 60.3
Actinidia23064 Actinidia chinensis HOM05D003443 ORTHO05D008640 3.4e-37 158.7 138 63.8
FAN27G2419 Fragaria x ananassa HOM05D003443 ORTHO05D008640 4.5e-37 158.3 146 58.2
Actinidia02607 Actinidia chinensis HOM05D003443 ORTHO05D008640 5.9e-37 157.9 143 61.5
Lalb_Chr10g0101911 Lupinus albus HOM05D003443 ORTHO05D008640 1.3e-36 156.8 136 62.5
AT4G08240 Arabidopsis thaliana HOM05D003443 ORTHO05D008640 1.7e-36 156.4 137 59.1
Sp6g09810 Schrenkiella parvula HOM05D003443 ORTHO05D008640 1.7e-36 156.4 140 57.9
CSS0034050 Camellia sinensis var. sinensis HOM05D003443 ORTHO05D008640 2.2e-36 156.0 146 61.6
Thhalv10029053m.g Eutrema salsugineum HOM05D003443 ORTHO05D008640 2.9e-36 155.6 139 59.0
BraA03t12014Z Brassica rapa HOM05D003443 ORTHO05D008640 3.8e-36 155.2 137 59.9
CANSAT25G1680 Cannabis sativa HOM05D003443 ORTHO05D008640 1.4e-35 153.3 147 58.5
THA.LOC104817138 Tarenaya hassleriana HOM05D003443 ORTHO05D008640 2.5e-35 152.5 137 62.0
arahy.Tifrunner.gnm1.ann1.B00VWE Arachis hypogaea HOM05D003443 ORTHO05D008640 5.5e-35 151.4 149 58.4
arahy.Tifrunner.gnm1.ann1.ZIXY5S Arachis hypogaea HOM05D003443 ORTHO05D008640 5.5e-35 151.4 146 58.9
Carub.0006s2677 Capsella rubella HOM05D003443 ORTHO05D008640 7.2e-35 151.0 137 56.9
Nn4g26023 Nelumbo nucifera HOM05D003443 ORTHO05D008640 7.2e-35 151.0 134 61.2
DCAR_014106 Daucus carota HOM05D003443 ORTHO05D008640 1.2e-34 150.2 140 60.0
Aa31LG9G14320 Aethionema arabicum HOM05D003443 ORTHO05D008640 1.6e-34 149.8 139 60.4
Medtr5g058660 Medicago truncatula HOM05D003443 ORTHO05D008640 1.6e-34 149.8 130 64.6
Medtr5g059030 Medicago truncatula HOM05D003443 ORTHO05D008640 1.6e-34 149.8 130 64.6
A03p27990 Brassica napus HOM05D003443 ORTHO05D008640 2.1e-34 149.4 137 57.7
Hma1.2p1_0073F.1_g038390 Hydrangea macrophylla HOM05D003443 ORTHO05D008640 2.1e-34 149.4 128 64.1
BcaC01g04776 Brassica carinata HOM05D003443 ORTHO05D008640 3.6e-34 148.7 137 57.7
C03p33840 Brassica napus HOM05D003443 ORTHO05D008640 3.6e-34 148.7 137 57.7
BolC3t15700H Brassica oleracea HOM05D003443 ORTHO05D008640 3.6e-34 148.7 137 57.7
CARHR259340 Cardamine hirsuta HOM05D003443 ORTHO05D008640 3.6e-34 148.7 134 58.2
vmacro12548 Vaccinium macrocarpon HOM05D003443 ORTHO05D008640 3.6e-34 148.7 147 59.2
Ca_26970_v3 Cicer arietinum L. HOM05D003443 ORTHO05D008640 1.0e-33 147.1 132 65.9
AUR62004720 Chenopodium quinoa HOM05D003443 ORTHO05D008640 1.4e-33 146.7 140 56.4
Glyma.14G162600 Glycine max HOM05D003443 ORTHO05D008640 1.8e-33 146.4 128 64.1
Nitab4.5_0002883g0010 Nicotiana tabacum HOM05D003443 ORTHO05D008640 2.5e-32 142.5 135 61.5
Peaxi162Scf00395g00717 Petunia axillaris HOM05D003443 ORTHO05D008640 1.3e-31 140.2 138 55.8
Lj1g0013808 Lotus japonicus HOM05D003443 ORTHO05D008640 3.7e-31 138.7 140 57.9
CAN.G513.1 Capsicum annuum HOM05D003443 ORTHO05D008640 4.8e-31 138.3 130 60.8
VMungo0647G0179 Vigna mungo HOM05D003443 ORTHO05D008640 4.8e-31 138.3 128 61.7
MBI06_g44272_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D008640 6.3e-31 137.9 136 55.1
MBI15_g35999_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D008640 6.3e-31 137.9 136 55.1
Peaxi162Scf00198g00098 Petunia axillaris HOM05D003443 ORTHO05D008640 1.8e-30 136.3 135 55.6
Sc01g0001350 Simmondsia chinensis HOM05D003443 ORTHO05D008640 3.1e-30 135.6 142 52.8
Sopen11g007760 Solanum pennellii HOM05D003443 ORTHO05D008640 4.1e-30 135.2 140 56.4
Nitab4.5_0001926g0050 Nicotiana tabacum HOM05D003443 ORTHO05D008640 9.1e-30 134.0 135 58.5
Solyc11g013020.2 Solanum lycopersicum HOM05D003443 ORTHO05D008640 1.5e-29 133.3 140 55.7
PGSC0003DMG400000906 Solanum tuberosum HOM05D003443 ORTHO05D008640 2.6e-29 132.5 135 57.8
PSO170G0931 Papaver somniferum HOM05D003443 ORTHO05D008640 4.5e-29 131.7 129 59.7
Rhsim06G0105400 Rhododendron simsii HOM05D003443 ORTHO05D008640 1.7e-28 129.8 141 58.2
Migut.C01148 Erythranthe guttata HOM05D003443 ORTHO05D008640 6.5e-28 127.9 131 56.5
MD08G1167900 Malus domestica HOM05D003443 ORTHO05D008640 1.9e-27 126.3 151 52.3
Sed0028054 Sechium edule HOM05D003443 ORTHO05D008640 1.9e-27 126.3 130 54.6
Duzib093G0610 Durio zibethinus HOM05D003443 ORTHO05D008640 3.2e-27 125.6 151 55.0
SalBow7G4791 Salvia bowleyana HOM05D003443 ORTHO05D008640 7.2e-27 124.4 127 55.9
SGA_v2.0_scaffold52G18981 Striga asiatica HOM05D003443 ORTHO05D008640 7.2e-27 124.4 127 56.7
Cc10_g11000 Coffea canephora HOM05D003443 ORTHO05D008640 1.6e-26 123.2 135 52.6
MELO3C011587.2 Cucumis melo HOM05D003443 ORTHO05D008640 2.7e-26 122.5 136 52.2
CsaV3_6G003590 Cucumis sativus L. HOM05D003443 ORTHO05D008640 2.7e-26 122.5 136 52.2
ATR0121G005 Amborella trichopoda HOM05D003443 ORTHO05D008640 4.7e-26 121.7 128 53.9
SalBow7G2413 Salvia bowleyana HOM05D003443 ORTHO05D008640 1.0e-25 120.6 134 53.0
TAR628G1666 Trochodendron aralioides HOM05D003443 ORTHO05D008640 3.9e-25 118.6 91 65.9
Aqoxy6G00163 Aquilegia oxysepala HOM05D003443 ORTHO05D008640 5.1e-25 118.2 131 55.0
PGR044G0044 Punica granatum HOM05D003443 ORTHO05D008640 8.8e-25 117.5 130 56.2
Lsat_1_v5_gn_4_136221 Lactuca sativa HOM05D003443 ORTHO05D008640 1.1e-24 117.1 134 48.5
HanXRQChr09g0254131 Helianthus annuus HOM05D003443 ORTHO05D008640 2.0e-24 116.3 128 47.7
AUR62023639 Chenopodium quinoa HOM05D003443 ORTHO05D008640 9.7e-24 114.0 130 48.5
MELO3C011304.2 Cucumis melo HOM05D003443 ORTHO05D008640 1.3e-23 113.6 153 47.1
Hund27039 Selenicereus undatus HOM05D003443 ORTHO05D008640 1.7e-23 113.2 209 37.3
ECA232G0443 Erigeron canadensis HOM05D003443 ORTHO05D008640 6.3e-23 111.3 128 48.4
MSTRG.1460 Avicennia marina HOM05D003443 ORTHO05D008640 8.2e-23 110.9 131 51.1
TPR.G8499 Trifolium pratense HOM05D028375 ORTHO05D008640 7.0e-22 107.8 127 52.0
HPP92_002301 Vanilla planifolia HOM05D003443 ORTHO05D008640 5.9e-21 104.8 124 46.8
Cfa009666 Carpinus fangiana HOM05D003443 ORTHO05D008640 1.7e-20 103.2 93 60.2
Eucgr.L01689 Eucalyptus grandis HOM05D003443 ORTHO05D008640 1.1e-19 100.5 88 59.1
unitig_747.g21488 Utricularia gibba HOM05D003443 ORTHO05D008640 1.4e-19 100.1 127 48.0
Phvul.008G165400 Phaseolus vulgaris HOM05D003443 ORTHO05D008640 1.2e-18 97.1 128 50.0
Ah.16g110170 Amaranthus hybridus HOM05D003443 ORTHO05D008640 2.1e-18 96.3 84 54.8
TWI12G0841 Tripterygium wilfordii HOM05D003443 ORTHO05D008640 1.8e-17 93.2 76 60.5
Oeu047933.1 Olea europaea HOM05D003443 ORTHO05D008640 2.3e-17 92.8 150 42.7
ClCG08G005410 Citrullus lanatus HOM05D003443 ORTHO05D008640 1.1e-16 90.5 212 33.0
Zm00001eb244530 Zea mays HOM05D003443 ORTHO05D008640 1.5e-16 90.1 122 45.1
SEGI_04119 Sequoiadendron giganteum HOM05D003443 ORTHO05D008640 2.0e-16 89.7 139 42.4
CDE06G0537 Ceratophyllum demersum HOM05D003443 ORTHO05D008640 3.3e-16 89.0 111 43.2
Os02g0567000 Oryza sativa ssp. japonica HOM05D003443 ORTHO05D008640 3.3e-16 89.0 146 42.5
CDE08G0113 Ceratophyllum demersum HOM05D003443 ORTHO05D008640 9.7e-16 87.4 114 45.6
Cpa.g.sc36.31 Carica papaya HOM05D003443 ORTHO05D008640 2.8e-15 85.9 104 50.0
Migut.G00969 Erythranthe guttata HOM05D003443 ORTHO05D008640 1.4e-14 83.6 131 44.3
SHI33895 Sapria himalayana HOM05D003443 ORTHO05D008640 2.5e-11 72.8 128 39.1
Mapoly0161s0025 Marchantia polymorpha HOM05D003443 ORTHO05D008640 5.5e-11 71.6 123 36.6
TPR.G109 Trifolium pratense HOM05D003443 ORTHO05D008640 1.8e-06 56.6 41 70.7


User provided reference genes

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