Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.1318 Acer truncatum HOM05D005489 ORTHO05D006629 8.6e-75 283.5 136 100.0
Atru.chr13.1362 Acer truncatum HOM05D005489 ORTHO05D006629 8.6e-75 283.5 136 100.0
TAR628G1556 Trochodendron aralioides HOM05D005489 ORTHO05D006629 8.9e-72 273.5 136 94.1
Gohir.A02G075000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 9.9e-71 270.0 136 91.9
Manes.18G073000 Manihot esculenta HOM05D005489 ORTHO05D006629 9.9e-71 270.0 136 93.4
COL.COLO4_32811 Corchorus olitorius HOM05D005489 ORTHO05D006629 1.3e-70 269.6 136 93.4
Thecc.08G116800 Theobroma cacao HOM05D005489 ORTHO05D006629 2.9e-70 268.5 136 93.4
Ciclev10002818m.g Citrus clementina HOM05D005489 ORTHO05D006629 4.9e-70 267.7 136 93.4
Gohir.D02G082100 Gossypium hirsutum HOM05D005489 ORTHO05D006629 4.9e-70 267.7 136 89.7
Aqoxy5G02479 Aquilegia oxysepala HOM05D005489 ORTHO05D006629 8.3e-70 266.9 136 91.2
CiPaw.05G228700 Carya illinoinensis HOM05D005489 ORTHO05D006629 8.3e-70 266.9 136 91.9
Hma1.2p1_0221F.1_g093180 Hydrangea macrophylla HOM05D005489 ORTHO05D006629 8.3e-70 266.9 136 91.9
Sed0015736 Sechium edule HOM05D005489 ORTHO05D006629 8.3e-70 266.9 136 91.9
PGR044G1289 Punica granatum HOM05D005489 ORTHO05D006629 1.1e-69 266.5 136 91.9
QL12p035283 Quercus lobata HOM05D005489 ORTHO05D006629 1.4e-69 266.2 135 92.6
Dinv26716 Davidia involucrata HOM05D005489 ORTHO05D006629 1.9e-69 265.8 136 91.9
MD15G1359200 Malus domestica HOM05D005489 ORTHO05D006629 1.9e-69 265.8 136 92.6
TWI12G0464 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 1.9e-69 265.8 136 92.6
TWI56G0906 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 1.9e-69 265.8 136 92.6
Sabra02G0070300 Salix brachista HOM05D005489 ORTHO05D006629 3.2e-69 265.0 136 92.6
MELO3C022783.2 Cucumis melo HOM05D005489 ORTHO05D006629 4.1e-69 264.6 136 90.4
Dinv27383 Davidia involucrata HOM05D005489 ORTHO05D006629 7.1e-69 263.8 136 91.2
TAR197G0004 Trochodendron aralioides HOM05D005489 ORTHO05D006629 9.2e-69 263.5 136 90.4
GSVIVG01008943001 Vitis vinifera HOM05D005489 ORTHO05D006629 9.2e-69 263.5 136 90.4
Duzib041G0073 Durio zibethinus HOM05D005489 ORTHO05D006629 1.2e-68 263.1 136 89.7
Potri.002G089300 Populus trichocarpa HOM05D005489 ORTHO05D006629 1.6e-68 262.7 136 91.2
Duzib093G1687 Durio zibethinus HOM05D005489 ORTHO05D006629 3.5e-68 261.5 136 90.4
PGSC0003DMG400027793 Solanum tuberosum HOM05D005489 ORTHO05D006629 3.5e-68 261.5 135 91.1
Gohir.A01G187700 Gossypium hirsutum HOM05D005489 ORTHO05D006629 6.0e-68 260.8 136 89.7
HanXRQChr11g0326271 Helianthus annuus HOM05D005489 ORTHO05D006629 1.3e-67 259.6 136 88.2
Gohir.A06G041000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.7e-67 259.2 136 88.2
Gohir.D06G041900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.7e-67 259.2 136 88.2
Gorai.010G047100 Gossypium raimondii HOM05D005489 ORTHO05D006629 1.7e-67 259.2 136 88.2
Sopen11g008580 Solanum pennellii HOM05D005489 ORTHO05D006629 1.7e-67 259.2 135 89.6
PSO017G5790 Papaver somniferum HOM05D005489 ORTHO05D006629 2.3e-67 258.8 136 88.2
PSO170G3859 Papaver somniferum HOM05D005489 ORTHO05D006629 2.3e-67 258.8 136 88.2
CAN.G255.20 Capsicum annuum HOM05D005489 ORTHO05D006629 3.0e-67 258.5 135 88.9
FvH4_5g38950 Fragaria vesca HOM05D005489 ORTHO05D006629 3.0e-67 258.5 136 89.7
FAN04G1587 Fragaria x ananassa HOM05D005489 ORTHO05D006629 3.0e-67 258.5 136 89.7
FAN08G2064 Fragaria x ananassa HOM05D005489 ORTHO05D006629 3.0e-67 258.5 136 89.7
FAN18G3455 Fragaria x ananassa HOM05D005489 ORTHO05D006629 3.0e-67 258.5 136 89.7
Lsat_1_v5_gn_4_135561 Lactuca sativa HOM05D005489 ORTHO05D006629 3.0e-67 258.5 136 89.0
CDE06G1809 Ceratophyllum demersum HOM05D005489 ORTHO05D006629 3.9e-67 258.1 136 87.5
Solyc11g013550.2 Solanum lycopersicum HOM05D005489 ORTHO05D006629 3.9e-67 258.1 135 88.9
Nn5g27958 Nelumbo nucifera HOM05D005489 ORTHO05D006629 5.1e-67 257.7 136 87.5
Potri.005G171901 Populus trichocarpa HOM05D005489 ORTHO05D006629 5.1e-67 257.7 136 89.7
HanXRQChr09g0260151 Helianthus annuus HOM05D005489 ORTHO05D006629 6.6e-67 257.3 135 88.1
Prupe.1G506000 Prunus persica HOM05D005489 ORTHO05D006629 1.5e-66 256.1 136 89.0
THA.LOC104806808 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 2.5e-66 255.4 136 86.8
Peaxi162Scf01011g00023 Petunia axillaris HOM05D005489 ORTHO05D006629 5.6e-66 254.2 135 88.9
Nn1g08538 Nelumbo nucifera HOM05D005489 ORTHO05D006629 7.3e-66 253.8 133 86.5
SGA_v2.0_scaffold118G32436 Striga asiatica HOM05D005489 ORTHO05D006629 7.3e-66 253.8 136 89.0
RcHm_v2.0_Chr7g0240921 Rosa chinensis HOM05D005489 ORTHO05D006629 9.5e-66 253.4 136 86.8
BcaB03g13640 Brassica carinata HOM05D005489 ORTHO05D006629 2.1e-65 252.3 136 84.6
A05p23180 Brassica napus HOM05D005489 ORTHO05D006629 2.1e-65 252.3 136 84.6
C05p36630 Brassica napus HOM05D005489 ORTHO05D006629 2.1e-65 252.3 136 84.6
BraA05t21185Z Brassica rapa HOM05D005489 ORTHO05D006629 2.1e-65 252.3 136 84.6
THA.LOC104813132 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 2.1e-65 252.3 136 84.6
CARHR034780 Cardamine hirsuta HOM05D005489 ORTHO05D006629 3.6e-65 251.5 136 83.8
AL1G51120 Arabidopsis lyrata HOM05D005489 ORTHO05D006629 4.7e-65 251.1 136 83.8
AT1G36980 Arabidopsis thaliana HOM05D005489 ORTHO05D006629 4.7e-65 251.1 136 83.8
EL10Ac1g00039 Beta vulgaris HOM05D005489 ORTHO05D006629 4.7e-65 251.1 136 86.0
Carub.0001s3388 Capsella rubella HOM05D005489 ORTHO05D006629 4.7e-65 251.1 136 84.6
Sp1g31180 Schrenkiella parvula HOM05D005489 ORTHO05D006629 6.2e-65 250.8 136 83.8
SGA_v2.0_scaffold24G10504 Striga asiatica HOM05D005489 ORTHO05D006629 8.1e-65 250.4 136 86.8
ECA232G0625 Erigeron canadensis HOM05D005489 ORTHO05D006629 1.8e-64 249.2 132 89.4
Thhalv10005115m.g Eutrema salsugineum HOM05D005489 ORTHO05D006629 1.8e-64 249.2 136 83.1
MBI06_g01046_MAGBIO Magnolia biondii HOM05D005489 ORTHO05D006629 1.8e-64 249.2 131 89.3
SalBow1G3581 Salvia bowleyana HOM05D005489 ORTHO05D006629 1.8e-64 249.2 133 86.5
Migut.C01190 Erythranthe guttata HOM05D005489 ORTHO05D006629 3.1e-64 248.4 136 84.6
Ca_25761_v3 Cicer arietinum L. HOM05D005489 ORTHO05D006629 5.2e-64 247.7 136 86.0
Glyma.04G253700 Glycine max HOM05D005489 ORTHO05D006629 6.8e-64 247.3 136 85.3
Medtr3g073300 Medicago truncatula HOM05D005489 ORTHO05D006629 6.8e-64 247.3 136 86.0
TPR.G32948 Trifolium pratense HOM05D005489 ORTHO05D006629 6.8e-64 247.3 136 85.3
Glyma.06G108600 Glycine max HOM05D005489 ORTHO05D006629 1.2e-63 246.5 136 85.3
Psat5g135600 Pisum sativum HOM05D005489 ORTHO05D006629 1.5e-63 246.1 136 85.3
arahy.Tifrunner.gnm1.ann1.204R5H Arachis hypogaea HOM05D005489 ORTHO05D006629 2.6e-63 245.4 136 83.8
arahy.Tifrunner.gnm1.ann1.64ZY3M Arachis hypogaea HOM05D005489 ORTHO05D006629 2.6e-63 245.4 136 83.8
MSTRG.1486 Avicennia marina HOM05D005489 ORTHO05D006629 2.6e-63 245.4 136 83.8
VMungo1127G1458 Vigna mungo HOM05D005489 ORTHO05D006629 5.8e-63 244.2 136 83.8
Oeu043793.1 Olea europaea HOM05D005489 ORTHO05D006629 7.6e-63 243.8 138 81.9
Lalb_Chr08g0241711 Lupinus albus HOM05D005489 ORTHO05D006629 9.9e-63 243.4 136 83.1
Lj1g0000272 Lotus japonicus HOM05D005489 ORTHO05D006629 2.2e-62 242.3 136 85.3
Lalb_Chr11g0065701 Lupinus albus HOM05D005489 ORTHO05D006629 2.9e-62 241.9 136 82.4
Phvul.011G165300 Phaseolus vulgaris HOM05D005489 ORTHO05D006629 3.8e-62 241.5 136 82.4
Migut.N03320 Erythranthe guttata HOM05D005489 ORTHO05D006629 2.4e-61 238.8 136 83.1
Oeu032962.1 Olea europaea HOM05D005489 ORTHO05D006629 2.4e-61 238.8 136 82.4
Nitab4.5_0000051g0120 Nicotiana tabacum HOM05D005489 ORTHO05D006629 4.1e-61 238.0 124 89.5
Sc01g0001550 Simmondsia chinensis HOM05D005489 ORTHO05D006629 5.4e-61 237.7 124 87.9
Gorai.002G220400 Gossypium raimondii HOM05D005489 ORTHO05D006629 9.2e-61 236.9 124 88.7
Aa31LG6G9070 Aethionema arabicum HOM05D005489 ORTHO05D006629 1.6e-60 236.1 124 86.3
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.6e-60 236.1 130 86.2
Rhsim06G0109100 Rhododendron simsii HOM05D005489 ORTHO05D006629 3.5e-60 235.0 124 88.7
Hund16821 Selenicereus undatus HOM05D005489 ORTHO05D006629 1.0e-59 233.4 129 82.2
Cc10_g10440 Coffea canephora HOM05D005489 ORTHO05D006629 5.1e-59 231.1 124 90.3
DCAR_014792 Daucus carota HOM05D005489 ORTHO05D006629 6.6e-59 230.7 131 80.2
Nitab4.5_0002332g0020 Nicotiana tabacum HOM05D005489 ORTHO05D006629 8.7e-59 230.3 119 89.1
Gohir.D01G181900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 3.3e-58 228.4 124 87.1
HPP92_005944 Vanilla planifolia HOM05D005489 ORTHO05D006629 1.2e-57 226.5 131 80.9
Actinidia29431 Actinidia chinensis HOM05D005489 ORTHO05D006629 6.2e-57 224.2 135 77.0
HPP92_002297 Vanilla planifolia HOM05D005489 ORTHO05D006629 6.2e-57 224.2 131 78.6
Zm00001eb100550 Zea mays HOM05D005489 ORTHO05D006629 4.0e-56 221.5 138 73.9
Zm00001eb244520 Zea mays HOM05D005489 ORTHO05D006629 4.0e-56 221.5 137 71.5
Os09g0453000 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 1.2e-55 219.9 138 75.4
Os02g0566900 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 5.8e-55 217.6 133 73.7
BolC5t32398H Brassica oleracea HOM05D005489 ORTHO05D006629 1.6e-52 209.5 120 80.8
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 1.3e-51 206.5 206 52.9
SEGI_34511 Sequoiadendron giganteum HOM05D005489 ORTHO05D006629 1.9e-50 202.6 136 69.9
BcaC05g27681 Brassica carinata HOM05D005489 ORTHO05D006629 2.5e-50 202.2 121 79.3
AagrBONN_evm.TU.Sc2ySwM_344.2049 Anthoceros agrestis HOM05D005489 ORTHO05D006629 5.6e-50 201.1 132 67.4
SMO116G0262 Selaginella moellendorffii HOM05D005489 ORTHO05D006629 2.8e-49 198.7 129 70.5
Pp3c2_28270 Physcomitrium patens HOM05D005489 ORTHO05D006629 6.4e-46 187.6 133 63.9
Mapoly0004s0020 Marchantia polymorpha HOM05D005489 ORTHO05D006629 2.4e-45 185.7 150 60.7
Pp3c1_10200 Physcomitrium patens HOM05D005489 ORTHO05D006629 5.4e-45 184.5 136 60.3
Sabra05G0129400 Salix brachista HOM05D005489 ORTHO05D006629 5.4e-45 184.5 137 72.3
Gorai.005G092000 Gossypium raimondii HOM05D005489 ORTHO05D006629 2.1e-44 182.6 92 93.5
CBR_g30829 Chara braunii HOM05D005489 ORTHO05D006629 3.7e-41 171.8 127 60.6
Haze_00523 Corylus avellana HOM05D005489 ORTHO05D006629 8.4e-38 160.6 76 92.1
CANSAT25G2554 Cannabis sativa HOM05D005489 ORTHO05D006629 1.9e-37 159.5 92 79.3
Cfa015959 Carpinus fangiana HOM05D005489 ORTHO05D006629 1.2e-36 156.8 74 91.9
TAR127G0005 Trochodendron aralioides HOM05D005489 ORTHO05D006629 4.6e-36 154.8 75 88.0
ClCG03G009110 Citrullus lanatus HOM05D005489 ORTHO05D006629 1.3e-35 153.3 74 89.2
CsaV3_5G023520 Cucumis sativus L. HOM05D005489 ORTHO05D006629 1.3e-35 153.3 74 89.2
BcaC05g27682 Brassica carinata HOM05D005489 ORTHO05D006629 4.3e-34 148.3 74 83.8
C05p36640 Brassica napus HOM05D005489 ORTHO05D006629 4.3e-34 148.3 74 83.8
DCAR_023128 Daucus carota HOM05D005489 ORTHO05D006629 4.3e-34 148.3 75 82.7
ATR0121G008 Amborella trichopoda HOM05D005489 ORTHO05D006629 2.8e-33 145.6 74 83.8
Nn2g15248 Nelumbo nucifera HOM05D005489 ORTHO05D006629 7.6e-31 137.5 73 79.5
Oeu050268.1 Olea europaea HOM05D005489 ORTHO05D006629 2.1e-28 129.4 76 77.6
AUR62004694 Chenopodium quinoa HOM05D005489 ORTHO05D006629 1.1e-26 123.6 140 52.1
Cre01.g042950 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 1.2e-23 113.6 127 42.5
Sopen11g008620 Solanum pennellii HOM05D000147 ORTHO05D004360 2.9e-22 109.0 72 75.0
ClCG03G009140 Citrullus lanatus HOM05D005489 ORTHO05D006629 1.9e-18 96.3 50 96.0
PRCOL_00003843 Prasinoderma coloniale HOM05D005489 ORTHO05D006629 1.3e-17 93.6 117 45.3
Eucgr.F04378 Eucalyptus grandis HOM05D005489 ORTHO05D006629 4.8e-17 91.7 47 80.9
SalBow7G4082 Salvia bowleyana HOM05D005489 ORTHO05D006629 1.4e-16 90.1 161 41.6
Solyc11g013660.1 Solanum lycopersicum HOM05D005489 ORTHO05D006629 8.8e-11 70.9 70 57.1
SalBow7G1125 Salvia bowleyana HOM05D002998 ORTHO05D006629 2.0e-10 69.7 35 82.9
Os08g0469200 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 7.0e-08 61.2 67 49.3
PRCOL_00003098 Prasinoderma coloniale HOM05D001685 ORTHO05D007488 1.0e-06 57.4 137 32.1


User provided reference genes

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