Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.1349 Acer truncatum HOM05D003427 ORTHO05D003927 1.1e-153 546.6 274 100.0
Atru.chr13.1391 Acer truncatum HOM05D003427 ORTHO05D003927 1.1e-137 493.4 255 98.8
Cpa.g.sc36.19 Carica papaya HOM05D003427 ORTHO05D003927 9.1e-100 367.5 253 74.7
Ciclev10001037m.g Citrus clementina HOM05D003427 ORTHO05D003927 8.0e-96 354.4 256 73.4
QL07p045468 Quercus lobata HOM05D003427 ORTHO05D003927 4.4e-94 348.6 251 71.3
QL04p060321 Quercus lobata HOM05D003427 ORTHO05D003927 1.1e-92 344.0 251 70.5
Actinidia23060 Actinidia chinensis HOM05D003427 ORTHO05D003927 3.1e-92 342.4 251 70.5
Dinv27352 Davidia involucrata HOM05D003427 ORTHO05D003927 1.2e-91 340.5 251 72.1
Eucgr.F04372 Eucalyptus grandis HOM05D003427 ORTHO05D003927 1.0e-90 337.4 251 69.3
GSVIVG01008915001 Vitis vinifera HOM05D003427 ORTHO05D003927 8.6e-90 334.3 251 69.3
Haze_00493 Corylus avellana HOM05D003427 ORTHO05D003927 3.4e-86 322.4 268 64.6
Potri.005G174600 Populus trichocarpa HOM05D003427 ORTHO05D003927 4.4e-86 322.0 254 66.1
Prupe.1G502900 Prunus persica HOM05D003427 ORTHO05D003927 3.7e-85 318.9 249 68.7
CiPaw.05G226400 Carya illinoinensis HOM05D003427 ORTHO05D003927 3.2e-84 315.8 253 65.6
Thecc.08G120400 Theobroma cacao HOM05D003427 ORTHO05D003927 9.5e-81 304.3 251 65.7
CSS0043512 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 1.2e-80 303.9 238 65.5
CSS0048113 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 1.2e-80 303.9 238 65.5
FvH4_2g13600 Fragaria vesca HOM05D003427 ORTHO05D003927 2.8e-80 302.8 248 66.1
MD15G1354500 Malus domestica HOM05D003427 ORTHO05D003927 3.6e-80 302.4 248 68.1
TWI12G1192 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 1.4e-79 300.4 254 65.0
Cfa015981 Carpinus fangiana HOM05D003427 ORTHO05D003927 3.1e-79 299.3 251 64.1
RcHm_v2.0_Chr6g0275211 Rosa chinensis HOM05D003427 ORTHO05D003927 3.1e-79 299.3 248 66.5
FAN15G0544 Fragaria x ananassa HOM05D003427 ORTHO05D003927 4.0e-79 298.9 262 63.7
CANSAT56G1611 Cannabis sativa HOM05D003427 ORTHO05D003927 6.8e-79 298.1 246 65.4
CSS0044236 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 4.4e-78 295.4 238 65.1
ClCG03G009520 Citrullus lanatus HOM05D003427 ORTHO05D003927 4.4e-78 295.4 251 64.5
Sc01g0001400 Simmondsia chinensis HOM05D003427 ORTHO05D003927 7.5e-78 294.7 240 65.4
CANSAT56G1577 Cannabis sativa HOM05D003427 ORTHO05D003927 2.9e-77 292.7 246 64.6
FAN24G2318 Fragaria x ananassa HOM05D003427 ORTHO05D003927 8.3e-77 291.2 263 62.7
CsaV3_5G023150 Cucumis sativus L. HOM05D003427 ORTHO05D003927 1.1e-76 290.8 256 63.3
Duzib116G0521 Durio zibethinus HOM05D003427 ORTHO05D003927 4.1e-76 288.9 251 62.2
Gorai.010G048400 Gossypium raimondii HOM05D003427 ORTHO05D003927 7.0e-76 288.1 251 64.1
Gohir.A06G042200 Gossypium hirsutum HOM05D003427 ORTHO05D003927 9.2e-76 287.7 251 64.1
TAR381G1219 Trochodendron aralioides HOM05D003427 ORTHO05D003927 9.2e-76 287.7 262 61.8
MELO3C003029.2 Cucumis melo HOM05D003427 ORTHO05D003927 1.2e-75 287.3 256 62.9
Gohir.D06G043200 Gossypium hirsutum HOM05D003427 ORTHO05D003927 2.7e-75 286.2 251 62.9
Duzib093G1044 Durio zibethinus HOM05D003427 ORTHO05D003927 6.0e-75 285.0 252 63.1
Manes.18G074712 Manihot esculenta HOM05D003427 ORTHO05D003927 1.1e-73 280.8 251 63.7
SalBow7G2208 Salvia bowleyana HOM05D003427 ORTHO05D003927 1.5e-70 270.4 255 61.6
Oeu050892.2 Olea europaea HOM05D003427 ORTHO05D003927 9.9e-70 267.7 255 57.6
SalBow7G0329 Salvia bowleyana HOM05D003427 ORTHO05D003927 9.9e-70 267.7 255 61.2
Cc06_g13570 Coffea canephora HOM05D003427 ORTHO05D003927 2.2e-69 266.5 241 62.7
MSTRG.25396 Avicennia marina HOM05D003427 ORTHO05D003927 4.9e-69 265.4 251 60.6
Hund16834 Selenicereus undatus HOM05D003427 ORTHO05D003927 4.9e-69 265.4 251 60.2
MD05G1028200 Malus domestica HOM05D003427 ORTHO05D003927 5.4e-68 261.9 253 62.1
Sp4g23950 Schrenkiella parvula HOM05D003427 ORTHO05D003927 2.1e-67 260.0 254 61.0
THA.LOC104800187 Tarenaya hassleriana HOM05D003427 ORTHO05D003927 6.0e-67 258.5 251 60.2
Phvul.009G122400 Phaseolus vulgaris HOM05D003427 ORTHO05D003927 7.8e-67 258.1 234 59.0
EL10Ac1g00015 Beta vulgaris HOM05D003427 ORTHO05D003927 1.3e-66 257.3 237 62.0
FAN15G0165 Fragaria x ananassa HOM05D003427 ORTHO05D003927 6.6e-66 255.0 249 59.4
Carub.0004s2398 Capsella rubella HOM05D003427 ORTHO05D003927 8.6e-66 254.6 254 60.6
Sabra05G0131700 Salix brachista HOM05D003427 ORTHO05D003927 8.6e-66 254.6 255 56.9
TWI56G0570 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 8.6e-66 254.6 175 72.0
MSTRG.1469 Avicennia marina HOM05D003427 ORTHO05D003927 1.5e-65 253.8 251 57.4
Sabra05G0131500 Salix brachista HOM05D003427 ORTHO05D003927 1.9e-65 253.4 338 47.3
AL4G40010 Arabidopsis lyrata HOM05D003427 ORTHO05D003927 4.3e-65 252.3 242 62.8
AT2G41705 Arabidopsis thaliana HOM05D003427 ORTHO05D003927 5.6e-65 251.9 254 60.6
BcaB06g29198 Brassica carinata HOM05D003427 ORTHO05D003927 4.7e-64 248.8 254 58.7
CAN.G134.189 Capsicum annuum HOM05D003427 ORTHO05D003927 4.7e-64 248.8 251 57.4
Lj1g0010808 Lotus japonicus HOM05D003427 ORTHO05D003927 4.7e-64 248.8 237 60.8
C04p69170 Brassica napus HOM05D003427 ORTHO05D003927 6.2e-64 248.4 254 59.1
COL.COLO4_38335 Corchorus olitorius HOM05D003427 ORTHO05D003927 1.4e-63 247.3 247 57.1
Aa31LG1G23720 Aethionema arabicum HOM05D003427 ORTHO05D003927 1.8e-63 246.9 253 57.7
FvH4_2g26430 Fragaria vesca HOM05D003427 ORTHO05D003927 3.1e-63 246.1 248 59.3
FAN24G2254 Fragaria x ananassa HOM05D003427 ORTHO05D003927 3.1e-63 246.1 248 59.3
VMungo1309G2531 Vigna mungo HOM05D003427 ORTHO05D003927 5.2e-63 245.4 232 58.6
BolC4t28415H Brassica oleracea HOM05D003427 ORTHO05D003927 8.9e-63 244.6 252 59.1
RcHm_v2.0_Chr6g0295111 Rosa chinensis HOM05D003427 ORTHO05D003927 1.2e-62 244.2 255 61.2
CARHR136800 Cardamine hirsuta HOM05D003427 ORTHO05D003927 2.0e-62 243.4 254 60.2
Thhalv10016628m.g Eutrema salsugineum HOM05D003427 ORTHO05D003927 2.0e-62 243.4 254 59.4
Aqoxy1G02472 Aquilegia oxysepala HOM05D003427 ORTHO05D003927 2.6e-62 243.0 262 56.9
Hund16838 Selenicereus undatus HOM05D003427 ORTHO05D003927 2.6e-62 243.0 308 46.8
Ah.05g172200 Amaranthus hybridus HOM05D003427 ORTHO05D003927 9.9e-62 241.1 248 54.4
A04p31750 Brassica napus HOM05D003427 ORTHO05D003927 9.9e-62 241.1 246 59.3
PSO384G4155 Papaver somniferum HOM05D003427 ORTHO05D003927 1.3e-61 240.7 268 53.4
BraA04t18633Z Brassica rapa HOM05D003427 ORTHO05D003927 1.7e-61 240.4 246 58.5
ECA246G0604 Erigeron canadensis HOM05D003427 ORTHO05D003927 2.2e-61 240.0 251 54.2
Lalb_Chr11g0065761 Lupinus albus HOM05D003427 ORTHO05D003927 2.9e-61 239.6 241 59.3
Glyma.04G252000 Glycine max HOM05D003427 ORTHO05D003927 3.8e-61 239.2 237 57.4
HanXRQChr17g0537311 Helianthus annuus HOM05D003427 ORTHO05D003927 4.9e-61 238.8 251 53.8
arahy.Tifrunner.gnm1.ann1.X2WTDQ Arachis hypogaea HOM05D003427 ORTHO05D003927 8.4e-61 238.0 233 57.5
VMungo1215G1715 Vigna mungo HOM05D003427 ORTHO05D003927 1.4e-60 237.3 237 57.0
arahy.Tifrunner.gnm1.ann1.81342Q Arachis hypogaea HOM05D003427 ORTHO05D003927 1.9e-60 236.9 233 57.5
Medtr3g072830 Medicago truncatula HOM05D003427 ORTHO05D003927 7.1e-60 235.0 235 55.7
Nitab4.5_0006276g0030 Nicotiana tabacum HOM05D003427 ORTHO05D003927 7.8e-59 231.5 271 54.6
Sopen11g008180 Solanum pennellii HOM05D003427 ORTHO05D003927 1.3e-58 230.7 252 56.3
Nitab4.5_0005357g0010 Nicotiana tabacum HOM05D003427 ORTHO05D003927 5.1e-58 228.8 254 55.1
Potri.002G086800 Populus trichocarpa HOM05D003427 ORTHO05D003927 5.1e-58 228.8 162 71.6
TPR.G19881 Trifolium pratense HOM05D003427 ORTHO05D003927 5.1e-58 228.8 237 55.7
Lsat_1_v5_gn_3_20261 Lactuca sativa HOM05D003427 ORTHO05D003927 3.3e-57 226.1 255 52.2
Ca_15210_v3 Cicer arietinum L. HOM05D003427 ORTHO05D003927 7.3e-57 224.9 242 56.6
Phvul.003G010800 Phaseolus vulgaris HOM05D003427 ORTHO05D003927 9.6e-57 224.6 232 55.6
Solyc11g013120.2 Solanum lycopersicum HOM05D003427 ORTHO05D003927 1.6e-56 223.8 252 54.8
AUR62036406 Chenopodium quinoa HOM05D003427 ORTHO05D003927 3.1e-55 219.5 256 51.2
PGSC0003DMG400012073 Solanum tuberosum HOM05D003427 ORTHO05D003927 3.1e-55 219.5 252 54.4
ECA233G4311 Erigeron canadensis HOM05D001171 ORTHO05D006126 5.8e-54 215.3 245 51.8
Glyma.06G110500 Glycine max HOM05D003427 ORTHO05D003927 4.9e-53 212.2 239 53.1
BcaB06g29200 Brassica carinata HOM05D003427 ORTHO05D003927 8.4e-53 211.5 130 81.5
A05p02420 Brassica napus HOM05D003427 ORTHO05D003927 1.4e-52 210.7 241 54.8
BraA05t19236Z Brassica rapa HOM05D003427 ORTHO05D003927 1.4e-52 210.7 241 54.8
Migut.C01159 Erythranthe guttata HOM05D003427 ORTHO05D003927 2.4e-52 209.9 252 50.8
Rhsim06G0106600 Rhododendron simsii HOM05D003427 ORTHO05D003927 3.2e-52 209.5 145 69.0
C04p02870 Brassica napus HOM05D003427 ORTHO05D003927 4.2e-52 209.1 241 54.4
BcaNung06817 Brassica carinata HOM05D003427 ORTHO05D003927 1.6e-51 207.2 242 53.3
BcaC02g12787 Brassica carinata HOM05D003427 ORTHO05D003927 4.6e-51 205.7 249 52.6
BolC4t21927H Brassica oleracea HOM05D003427 ORTHO05D003927 4.6e-51 205.7 249 52.6
Nn5g28144 Nelumbo nucifera HOM05D003427 ORTHO05D003927 1.7e-50 203.8 267 52.1
Peaxi162Scf00402g00076 Petunia axillaris HOM05D003427 ORTHO05D003927 1.9e-49 200.3 277 48.4
SGA_v2.0_scaffold24G10480 Striga asiatica HOM05D003427 ORTHO05D003927 1.9e-49 200.3 243 51.4
TPR.G39483 Trifolium pratense HOM05D003427 ORTHO05D003927 4.3e-49 199.1 240 52.1
Medtr3g072840 Medicago truncatula HOM05D003427 ORTHO05D003927 7.3e-49 198.4 243 54.3
AUR62036452 Chenopodium quinoa HOM05D003427 ORTHO05D003927 1.6e-48 197.2 237 51.1
AUR62004716 Chenopodium quinoa HOM05D003427 ORTHO05D003927 2.1e-48 196.8 237 52.3
vmacro20081 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 2.1e-48 196.8 152 65.8
Lalb_Chr23g0270941 Lupinus albus HOM05D003427 ORTHO05D003927 1.1e-47 194.5 139 69.1
AUR62023631 Chenopodium quinoa HOM05D003427 ORTHO05D003927 1.4e-47 194.1 237 49.8
MD05G1028400 Malus domestica HOM05D003427 ORTHO05D003927 4.0e-47 192.6 248 50.4
TWI74G0994 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 6.9e-47 191.8 138 68.8
CDE01G0736 Ceratophyllum demersum HOM05D003427 ORTHO05D003927 1.5e-46 190.7 260 49.6
vmacro05626 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 2.0e-46 190.3 179 57.5
SGA_v2.0_scaffold52G18992 Striga asiatica HOM05D003427 ORTHO05D003927 2.6e-46 189.9 251 48.6
FAN27G1027 Fragaria x ananassa HOM05D003427 ORTHO05D003927 3.4e-46 189.5 217 54.4
Psat5g133440 Pisum sativum HOM05D003427 ORTHO05D003927 4.5e-46 189.1 115 75.7
Medtr3g007470 Medicago truncatula HOM05D003427 ORTHO05D003927 5.8e-46 188.7 147 66.7
EL10Ac7g18243 Beta vulgaris HOM05D003427 ORTHO05D003927 1.1e-44 184.5 115 76.5
Hma1.2p1_0009F.1_g006270 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 3.2e-44 183.0 109 78.9
Lj3g0027376 Lotus japonicus HOM05D003427 ORTHO05D003927 3.2e-44 183.0 148 62.8
Hund27042 Selenicereus undatus HOM05D003427 ORTHO05D003927 1.6e-43 180.6 151 60.3
TAR381G1345 Trochodendron aralioides HOM05D003427 ORTHO05D003927 1.6e-43 180.6 207 54.1
Sed0011022 Sechium edule HOM05D003427 ORTHO05D003927 4.6e-43 179.1 114 75.4
CiPaw.05G226300 Carya illinoinensis HOM05D003427 ORTHO05D003927 1.0e-42 177.9 253 45.5
Ca_14080_v3 Cicer arietinum L. HOM05D003427 ORTHO05D003927 3.0e-42 176.4 108 79.6
HPP92_012116 Vanilla planifolia HOM05D003427 ORTHO05D003927 8.7e-42 174.9 262 42.7
Psat5g229600 Pisum sativum HOM05D003427 ORTHO05D003927 1.1e-39 167.9 115 70.4
Os10g0567000 Oryza sativa ssp. japonica HOM05D003427 ORTHO05D003927 4.5e-38 162.5 263 40.3
SEGI_27083 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 2.4e-36 156.8 228 44.3
Zm00001eb390680 Zea mays HOM05D003427 ORTHO05D003927 7.1e-36 155.2 219 43.8
SEGI_02547 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 3.5e-35 152.9 257 42.4
vmacro12550 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 3.5e-35 152.9 109 68.8
Glyma.06G110450 Glycine max HOM05D003427 ORTHO05D003927 6.0e-35 152.1 94 77.7
MD15G1354300 Malus domestica HOM05D003427 ORTHO05D003927 6.0e-35 152.1 99 75.8
MD08G1168900 Malus domestica HOM05D003427 ORTHO05D003927 6.7e-34 148.7 220 45.9
AagrBONN_evm.TU.Sc2ySwM_117.415 Anthoceros agrestis HOM05D003427 ORTHO05D003927 1.6e-32 144.1 125 56.0
SEGI_33607 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 3.1e-31 139.8 105 62.9
SEGI_06352 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 2.6e-30 136.7 111 59.5
unitig_748.g7679 Utricularia gibba HOM05D003427 ORTHO05D003927 7.6e-30 135.2 137 54.0
Rhsim10G0043500 Rhododendron simsii HOM05D003427 ORTHO05D003927 1.3e-29 134.4 180 46.1
RhsimUnG0120600 Rhododendron simsii HOM05D003427 ORTHO05D003927 8.4e-29 131.7 198 42.9
Mapoly0005s0025 Marchantia polymorpha HOM05D003427 ORTHO05D003927 5.1e-26 122.5 105 53.3
Pp3c27_680 Physcomitrium patens HOM05D003427 ORTHO05D003927 8.7e-26 121.7 129 49.6
Aqoxy1G02473 Aquilegia oxysepala HOM05D003427 ORTHO05D003927 3.3e-25 119.8 88 69.3
Pp3c6_15270 Physcomitrium patens HOM05D003427 ORTHO05D003927 7.4e-25 118.6 113 53.1
AagrBONN_evm.TU.Sc2ySwM_344.5028 Anthoceros agrestis HOM05D003427 ORTHO05D003927 4.1e-23 112.8 104 53.8
Hma1.2p1_0009F.1_g006283 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 4.1e-23 112.8 75 69.3
ATR0807G044 Amborella trichopoda HOM05D003427 ORTHO05D003927 5.3e-23 112.5 89 59.6
Lj4A597T12 Lonicera japonica HOM05D003427 ORTHO05D003927 3.4e-22 109.8 55 89.1
MSTRG.1470 Avicennia marina HOM05D003427 ORTHO05D003927 3.2e-20 103.2 55 85.5
Hma1.2p1_0009F.1_g006290 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 5.5e-20 102.4 50 86.0
Lalb_Chr23g0270911 Lupinus albus HOM05D003427 ORTHO05D003927 6.7e-18 95.5 69 69.6
MD08G1121700 Malus domestica HOM05D003427 ORTHO05D003927 8.8e-18 95.1 56 80.4
Ca_14032_v3 Cicer arietinum L. HOM05D003427 ORTHO05D003927 3.3e-17 93.2 50 84.0
TPR.G25497 Trifolium pratense HOM05D003427 ORTHO05D003927 7.4e-17 92.0 76 59.2
MD16G1151600 Malus domestica HOM05D003427 ORTHO05D003927 2.2e-16 90.5 50 82.0
TAR381G0480 Trochodendron aralioides HOM05D003427 ORTHO05D003927 2.2e-16 90.5 50 84.0
MD08G1170500 Malus domestica HOM05D003427 ORTHO05D003927 3.1e-15 86.7 101 46.5
SEGI_19823 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 4.5e-14 82.8 101 48.5
Hma1.2p1_0523F.1_g172050 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 5.9e-14 82.4 46 78.3
CAN.G734.1 Capsicum annuum HOM05D003427 ORTHO05D003927 7.7e-14 82.0 131 45.0
Glyma.04G252050 Glycine max HOM05D003427 ORTHO05D003927 1.3e-13 81.3 50 74.0
SEGI_25864 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 3.2e-12 76.6 62 59.7
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 9.4e-12 75.1 71 52.1
SEGI_10482 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 3.9e-10 69.7 59 55.9
Hma1.2p1_0009F.1_g006300 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 1.3e-08 64.7 55 60.0
CBR_g54098 Chara braunii HOM05D003427 ORTHO05D003927 2.8e-08 63.5 61 42.6
Migut.C01160 Erythranthe guttata HOM05D003427 ORTHO05D003927 4.8e-08 62.8 41 75.6
DCAR_028636 Daucus carota HOM05D003427 ORTHO05D003927 6.9e-07 58.9 90 43.3
FAN20G1269 Fragaria x ananassa HOM05D031329 ORTHO05D029712 2.0e-06 57.4 108 42.6
unitig_32.g11457 Utricularia gibba HOM05D003427 ORTHO05D003927 2.0e-06 57.4 88 43.2


User provided reference genes

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