Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 2.2e-97 359.0 187 100.0
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 3.6e-71 271.9 172 80.2
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.0e-70 270.4 174 79.3
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 1.4e-70 270.0 173 80.3
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.5e-69 266.5 172 79.1
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 3.3e-69 265.4 169 79.9
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 7.4e-69 264.2 169 79.3
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 7.4e-69 264.2 173 77.5
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 1.3e-68 263.5 174 78.7
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.3e-68 263.5 173 78.6
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 1.3e-68 263.5 173 78.6
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 6.3e-68 261.2 173 78.0
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 8.2e-68 260.8 172 77.3
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.4e-67 260.0 172 77.9
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 1.4e-67 260.0 173 77.5
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 1.8e-67 259.6 173 77.5
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 1.8e-67 259.6 173 75.7
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 9.1e-67 257.3 169 76.9
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.5e-66 256.5 173 75.1
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.5e-66 256.5 172 77.9
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.0e-66 256.1 175 73.7
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 2.0e-66 256.1 172 77.3
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 2.6e-66 255.8 173 75.1
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.6e-66 255.8 171 77.2
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 4.5e-66 255.0 169 76.9
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 4.5e-66 255.0 168 79.2
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 4.5e-66 255.0 168 77.4
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 5.9e-66 254.6 170 75.3
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 5.9e-66 254.6 172 75.6
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 7.7e-66 254.2 170 78.8
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 7.7e-66 254.2 170 76.5
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 7.7e-66 254.2 169 78.1
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 1.0e-65 253.8 172 75.0
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.3e-65 253.4 168 78.6
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.7e-65 253.1 172 75.6
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.7e-65 253.1 172 76.7
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 2.2e-65 252.7 175 75.4
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 2.2e-65 252.7 172 74.4
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 2.2e-65 252.7 175 74.3
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 2.2e-65 252.7 169 75.1
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 3.8e-65 251.9 172 73.3
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 3.8e-65 251.9 168 78.0
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 5.0e-65 251.5 165 77.6
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 6.5e-65 251.1 170 76.5
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.1e-64 250.4 177 71.8
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 1.1e-64 250.4 172 76.7
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 3.2e-64 248.8 173 75.1
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 4.2e-64 248.4 178 73.0
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 5.5e-64 248.1 169 76.3
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 7.2e-64 247.7 168 74.4
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 9.4e-64 247.3 168 76.2
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 1.2e-63 246.9 173 72.3
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 1.2e-63 246.9 169 75.1
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 2.1e-63 246.1 169 73.4
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 2.3e-62 242.7 168 70.8
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.3e-62 242.7 195 66.7
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 5.2e-62 241.5 193 66.8
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 6.7e-62 241.1 172 69.8
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 6.7e-62 241.1 175 71.4
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 1.1e-61 240.4 173 72.3
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 1.1e-61 240.4 173 71.7
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 1.5e-61 240.0 168 70.8
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 1.5e-61 240.0 172 72.1
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 2.0e-61 239.6 171 70.8
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 2.0e-61 239.6 174 71.3
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 4.4e-61 238.4 172 71.5
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 5.7e-61 238.0 173 71.7
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 5.7e-61 238.0 171 72.5
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 5.7e-61 238.0 161 76.4
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 5.7e-61 238.0 172 72.7
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 5.7e-61 238.0 174 69.5
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 7.5e-61 237.7 173 70.5
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 9.7e-61 237.3 171 69.6
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 2.2e-60 236.1 171 71.3
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 2.2e-60 236.1 171 69.6
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 2.8e-60 235.7 170 71.8
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 2.8e-60 235.7 171 71.3
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 4.8e-60 235.0 196 66.3
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 1.1e-59 233.8 173 69.4
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 2.4e-59 232.6 171 71.9
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 3.1e-59 232.3 172 70.3
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 4.1e-59 231.9 189 67.7
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 4.1e-59 231.9 171 70.8
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 9.1e-59 230.7 172 68.0
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 1.2e-58 230.3 169 69.8
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.2e-58 230.3 172 69.2
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 2.6e-58 229.2 174 70.1
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 4.5e-58 228.4 169 72.2
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 5.9e-58 228.0 172 69.8
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 7.7e-58 227.6 172 68.0
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 1.0e-57 227.3 168 70.8
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 1.0e-57 227.3 169 69.2
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 1.7e-57 226.5 171 69.6
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 2.2e-57 226.1 173 67.1
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 2.9e-57 225.7 172 66.3
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 1.1e-56 223.8 171 67.3
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 1.5e-56 223.4 173 66.5
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 1.9e-56 223.0 171 67.8
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 3.2e-56 222.2 169 69.8
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 4.2e-56 221.9 173 67.6
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 4.2e-56 221.9 173 65.9
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 5.5e-56 221.5 172 66.3
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 7.2e-56 221.1 173 64.7
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 9.4e-56 220.7 173 65.3
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 1.2e-55 220.3 173 66.5
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 1.2e-55 220.3 173 65.3
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 1.2e-55 220.3 176 64.8
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 1.2e-55 220.3 173 65.3
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 2.1e-55 219.5 169 67.5
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 8.0e-55 217.6 173 64.7
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 8.0e-55 217.6 166 68.7
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 8.0e-55 217.6 166 68.7
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 1.4e-54 216.9 173 65.3
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.8e-54 216.5 173 66.5
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 3.0e-54 215.7 173 64.7
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 3.0e-54 215.7 169 65.7
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 8.8e-54 214.2 148 72.3
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 8.8e-54 214.2 172 66.3
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 8.3e-52 207.6 182 61.5
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.1e-51 207.2 152 69.1
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.8e-51 206.5 173 63.0
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 2.4e-51 206.1 238 50.0
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 4.1e-51 205.3 156 70.5
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 1.2e-50 203.8 172 61.6
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.7e-50 202.6 196 57.7
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 3.5e-50 202.2 145 71.0
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 3.5e-50 202.2 175 60.6
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 2.2e-49 199.5 169 58.6
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.1e-48 197.2 169 62.7
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 2.5e-48 196.1 182 58.2
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 5.5e-48 194.9 135 71.1
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 1.6e-47 193.4 175 60.0
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 6.1e-47 191.4 169 58.6
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 5.2e-46 188.3 132 72.0
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 1.1e-43 180.6 118 78.0
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.4e-43 179.5 173 57.2
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 2.4e-43 179.5 169 56.8
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 3.1e-43 179.1 109 82.6
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 9.1e-43 177.6 149 63.1
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 5.9e-42 174.9 171 59.1
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 4.0e-38 162.2 172 52.9
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.5e-37 160.2 143 58.0
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 7.5e-37 157.9 95 81.1
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 6.4e-36 154.8 95 76.8
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 6.4e-36 154.8 95 80.0
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 1.7e-33 146.7 131 57.3
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 5.6e-32 141.7 106 69.8
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 4.0e-30 135.6 179 44.7
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 6.8e-30 134.8 189 44.4
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 5.4e-27 125.2 81 72.8
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 6.0e-26 121.7 114 57.9
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 2.8e-23 112.8 185 45.9
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 4.9e-20 102.1 85 63.5
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 3.2e-19 99.4 76 69.7
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 4.3e-16 89.0 92 52.2
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 1.2e-15 87.4 62 69.4
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.5e-13 80.5 59 67.8
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 2.6e-13 79.7 62 66.1
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 3.5e-10 69.3 43 79.1
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 1.0e-09 67.8 55 63.6
Gohir.D02G117850 Gossypium hirsutum HOM05D034602 ORTHO05D048040 1.4e-06 57.4 36 72.2
Gorai.007G225200 Gossypium raimondii HOM05D034602 ORTHO05D048040 8.9e-06 54.7 34 70.6


User provided reference genes

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