Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.12 Acer truncatum HOM05D007213 ORTHO05D009165 0.0e+00 1160.6 771 100.0
Ciclev10000432m.g Citrus clementina HOM05D007213 ORTHO05D009165 1.4e-174 617.5 787 57.2
Cfa014177 Carpinus fangiana HOM05D007213 ORTHO05D009165 9.9e-160 568.2 817 49.2
Haze_22902 Corylus avellana HOM05D007213 ORTHO05D009165 1.4e-158 564.3 824 52.1
Thecc.07G095200 Theobroma cacao HOM05D007213 ORTHO05D009165 1.3e-151 541.2 782 52.4
Dinv35497 Davidia involucrata HOM05D007213 ORTHO05D009165 3.0e-148 530.0 812 48.6
FAN04G0748 Fragaria x ananassa HOM05D007213 ORTHO05D009165 1.1e-145 521.5 792 49.9
GSVIVG01013472001 Vitis vinifera HOM05D007213 ORTHO05D009165 2.4e-145 520.4 739 46.4
Manes.05G113600 Manihot esculenta HOM05D007213 ORTHO05D009165 7.6e-144 515.4 822 52.1
Gohir.A04G034000 Gossypium hirsutum HOM05D007213 ORTHO05D009165 3.8e-143 513.1 802 51.0
Dinv05524 Davidia involucrata HOM05D007213 ORTHO05D009165 3.2e-142 510.0 870 46.3
Gohir.D05G349200 Gossypium hirsutum HOM05D007213 ORTHO05D009165 1.0e-140 505.0 798 51.5
Gorai.009G379100 Gossypium raimondii HOM05D007213 ORTHO05D009165 8.7e-140 501.9 800 52.6
TWI12G1047 Tripterygium wilfordii HOM05D007213 ORTHO05D009165 1.1e-139 501.5 782 57.3
Sabra02G0000800 Salix brachista HOM05D007213 ORTHO05D009165 5.7e-139 499.2 811 48.3
QL02p016552 Quercus lobata HOM05D007213 ORTHO05D009165 1.3e-138 498.0 830 50.0
Cpa.g.sc36.83 Carica papaya HOM05D007213 ORTHO05D009165 1.1e-137 495.0 802 47.5
FAN18G3120 Fragaria x ananassa HOM05D007213 ORTHO05D009165 3.4e-136 490.0 784 47.1
Potri.002G000800 Populus trichocarpa HOM05D007213 ORTHO05D009165 3.4e-136 490.0 801 47.1
MD04G1004600 Malus domestica HOM05D007213 ORTHO05D009165 7.7e-136 488.8 807 50.9
Actinidia15534 Actinidia chinensis HOM05D007213 ORTHO05D009165 7.9e-133 478.8 579 49.6
Actinidia17102 Actinidia chinensis HOM05D007213 ORTHO05D009165 2.3e-132 477.2 848 44.9
FAN08G1354 Fragaria x ananassa HOM05D007213 ORTHO05D009165 2.5e-131 473.8 789 48.7
CSS0032989 Camellia sinensis var. sinensis HOM05D007213 ORTHO05D009165 2.8e-130 470.3 895 41.9
FvH4_5g26850 Fragaria vesca HOM05D007213 ORTHO05D009165 3.7e-130 469.9 784 48.3
Lj1g0003700 Lotus japonicus HOM05D007213 ORTHO05D009165 8.2e-130 468.8 790 41.3
FAN13G0578 Fragaria x ananassa HOM05D007213 ORTHO05D009165 6.9e-129 465.7 785 48.0
Ca_24332_v3 Cicer arietinum L. HOM05D007213 ORTHO05D009165 2.0e-128 464.2 764 43.7
Rhsim06G0000200 Rhododendron simsii HOM05D007213 ORTHO05D009165 1.7e-127 461.1 845 42.1
vmacro21731 Vaccinium macrocarpon HOM05D007213 ORTHO05D009165 1.7e-127 461.1 835 42.0
Glyma.01G245400 Glycine max HOM05D007213 ORTHO05D009165 2.9e-127 460.3 770 46.1
COL.COLO4_36704 Corchorus olitorius HOM05D007213 ORTHO05D009165 1.6e-125 454.5 578 53.5
Eucgr.F03636 Eucalyptus grandis HOM05D007213 ORTHO05D009165 8.8e-124 448.7 855 42.8
Aqoxy5G00918 Aquilegia oxysepala HOM05D007213 ORTHO05D009165 3.3e-123 446.8 834 39.4
PGSC0003DMG400025663 Solanum tuberosum HOM05D007213 ORTHO05D009165 3.1e-121 440.3 810 38.5
Nn5g31088 Nelumbo nucifera HOM05D007213 ORTHO05D009165 7.7e-120 435.6 844 38.3
MBI01_g32846_MAGBIO Magnolia biondii HOM05D007213 ORTHO05D009165 2.9e-119 433.7 584 46.6
RcHm_v2.0_Chr7g0217751 Rosa chinensis HOM05D007213 ORTHO05D009165 2.9e-119 433.7 798 50.8
Phvul.002G054800 Phaseolus vulgaris HOM05D007213 ORTHO05D009165 8.5e-119 432.2 833 44.8
Peaxi162Scf00385g01231 Petunia axillaris HOM05D007213 ORTHO05D009165 2.3e-116 424.1 774 39.0
Medtr5g004630 Medicago truncatula HOM05D007213 ORTHO05D009165 2.0e-115 421.0 591 44.3
THA.LOC104801651 Tarenaya hassleriana HOM05D007213 ORTHO05D009165 6.3e-114 416.0 810 45.6
CiPaw.07G129300 Carya illinoinensis HOM05D007213 ORTHO05D009165 3.1e-113 413.7 598 47.8
TPR.G21615 Trifolium pratense HOM05D007213 ORTHO05D009165 3.1e-113 413.7 786 40.3
AUR62042263 Chenopodium quinoa HOM05D007213 ORTHO05D009165 1.2e-112 411.8 824 38.8
Sed0002482 Sechium edule HOM05D007213 ORTHO05D009165 4.5e-112 409.8 765 39.2
CAN.G1330.34 Capsicum annuum HOM05D007213 ORTHO05D009165 1.5e-110 404.8 777 39.3
AL6G36700 Arabidopsis lyrata HOM05D007213 ORTHO05D009165 4.2e-110 403.3 782 44.6
Prupe.1G004400 Prunus persica HOM05D007213 ORTHO05D009165 5.5e-110 402.9 816 43.1
BcaB02g09137 Brassica carinata HOM05D007213 ORTHO05D009165 9.4e-110 402.1 774 43.7
BraA05t19677Z Brassica rapa HOM05D007213 ORTHO05D009165 1.2e-109 401.7 772 42.1
A05p07120 Brassica napus HOM05D007213 ORTHO05D009165 4.0e-108 396.7 775 42.2
CARHR285120 Cardamine hirsuta HOM05D007213 ORTHO05D009165 4.4e-107 393.3 778 39.5
ECA233G0001 Erigeron canadensis HOM05D007213 ORTHO05D009165 7.5e-107 392.5 795 36.0
AT5G25070 Arabidopsis thaliana HOM05D007213 ORTHO05D009165 3.7e-106 390.2 792 42.2
HanXRQChr07g0204351 Helianthus annuus HOM05D007213 ORTHO05D009165 2.4e-105 387.5 847 37.1
AUR62036517 Chenopodium quinoa HOM05D007213 ORTHO05D009165 7.0e-105 386.0 829 35.2
VMungo1215G3163 Vigna mungo HOM05D007213 ORTHO05D009165 4.5e-104 383.3 836 43.9
Thhalv10016307m.g Eutrema salsugineum HOM05D007213 ORTHO05D009165 7.7e-104 382.5 783 42.0
Cc10_g00050 Coffea canephora HOM05D007213 ORTHO05D009165 2.5e-102 377.5 805 36.5
CANSAT54G2751 Cannabis sativa HOM05D007213 ORTHO05D009165 3.2e-102 377.1 580 42.9
Sp4g21590 Schrenkiella parvula HOM05D007213 ORTHO05D009165 9.4e-102 375.6 783 38.7
SpUn0018_0080 Schrenkiella parvula HOM05D007213 ORTHO05D009165 9.4e-102 375.6 783 38.7
PSO170G0484 Papaver somniferum HOM05D007213 ORTHO05D009165 1.0e-100 372.1 831 35.9
PSO017G1686 Papaver somniferum HOM05D007213 ORTHO05D009165 2.3e-100 370.9 820 36.6
EL10Ac5g11683 Beta vulgaris HOM05D007213 ORTHO05D009165 5.2e-100 369.8 828 34.7
BolC4t22448H Brassica oleracea HOM05D007213 ORTHO05D009165 1.2e-99 368.6 775 41.4
DCAR_013347 Daucus carota HOM05D007213 ORTHO05D009165 3.1e-97 360.5 574 41.3
C04p08490 Brassica napus HOM05D007213 ORTHO05D009165 3.6e-93 347.1 776 39.9
Lsat_1_v5_gn_8_25680 Lactuca sativa HOM05D007213 ORTHO05D009165 2.0e-91 341.3 582 38.7
Nitab4.5_0003364g0010 Nicotiana tabacum HOM05D007213 ORTHO05D009165 2.0e-88 331.3 589 39.6
ATR0605G010 Amborella trichopoda HOM05D007213 ORTHO05D009165 2.9e-87 327.4 533 40.7
Psat4g219720 Pisum sativum HOM05D007213 ORTHO05D009165 1.5e-86 325.1 711 41.9
Eucgr.B01563 Eucalyptus grandis HOM05D007213 ORTHO05D009165 1.9e-86 324.7 403 48.9
PGR031G0765 Punica granatum HOM05D007213 ORTHO05D009165 1.0e-84 318.9 817 40.9
CDE06G2408 Ceratophyllum demersum HOM05D007213 ORTHO05D009165 2.3e-84 317.8 515 39.4
Eucgr.B03972 Eucalyptus grandis HOM05D007213 ORTHO05D009165 9.8e-83 312.4 426 46.5
Aa31LG9G12510 Aethionema arabicum HOM05D007213 ORTHO05D009165 7.0e-73 279.6 803 38.4
Carub.0006s2290 Capsella rubella HOM05D007213 ORTHO05D009165 2.9e-66 257.7 786 39.3
Zm00001eb035390 Zea mays HOM05D007213 ORTHO05D009165 1.9e-65 255.0 815 34.4
Sc07g0007610 Simmondsia chinensis HOM05D007213 ORTHO05D009165 5.1e-63 246.9 621 33.8
TAR381G0309 Trochodendron aralioides HOM05D007213 ORTHO05D009165 7.3e-62 243.0 517 38.3
BcaC02g12047 Brassica carinata HOM05D007213 ORTHO05D009165 4.7e-61 240.4 481 37.0
Zm00001eb174530 Zea mays HOM05D007213 ORTHO05D009165 4.6e-56 223.8 800 33.1
HPP92_026844 Vanilla planifolia HOM05D007213 ORTHO05D009165 3.6e-53 214.2 395 41.3
TAR381G1607 Trochodendron aralioides HOM05D007213 ORTHO05D009165 8.4e-50 203.0 265 47.9
Mapoly0055s0021 Marchantia polymorpha HOM05D007213 ORTHO05D009165 4.0e-44 184.1 549 29.5
SMO239G0074 Selaginella moellendorffii HOM05D007213 ORTHO05D009165 3.4e-35 154.5 549 32.6
Glyma.03G099100 Glycine max HOM05D007213 ORTHO05D009165 5.8e-35 153.7 263 41.4
Actinidia08359 Actinidia chinensis HOM05D007213 ORTHO05D009165 8.2e-29 133.3 359 35.1
AagrBONN_evm.TU.Sc2ySwM_344.2101 Anthoceros agrestis HOM05D007213 ORTHO05D009165 1.0e-26 126.3 569 23.7
Hma1.2p1_0810F.1_g221910 Hydrangea macrophylla HOM05D007213 ORTHO05D009165 8.4e-26 123.2 116 58.6
Oeu000728.1 Olea europaea HOM05D007213 ORTHO05D009165 3.5e-24 117.9 115 58.3
HPP92_019587 Vanilla planifolia HOM05D007213 ORTHO05D009165 1.4e-17 95.9 137 44.5
HPP92_026843 Vanilla planifolia HOM05D007213 ORTHO05D009165 1.9e-17 95.5 324 29.9
Actinidia08360 Actinidia chinensis HOM05D007213 ORTHO05D009165 6.1e-16 90.5 74 68.9
SEGI_34531 Sequoiadendron giganteum HOM05D007213 ORTHO05D009165 2.0e-14 85.5 167 37.7
Lsat_1_v5_gn_2_25501 Lactuca sativa HOM05D007213 ORTHO05D009165 8.2e-13 80.1 81 48.1
Lsat_1_v5_gn_4_123560 Lactuca sativa HOM05D007213 ORTHO05D009165 8.2e-13 80.1 81 49.4
Lsat_1_v5_gn_4_171321 Lactuca sativa HOM05D007213 ORTHO05D009165 5.3e-12 77.4 81 46.9
Actinidia37290 Actinidia chinensis HOM05D007213 ORTHO05D009165 9.1e-12 76.6 87 50.6
Actinidia37289 Actinidia chinensis HOM05D007213 ORTHO05D009165 2.5e-09 68.6 192 34.4
Dinv19952 Davidia involucrata HOM05D007213 ORTHO05D009165 5.5e-09 67.4 70 48.6
ECA238G3550 Erigeron canadensis HOM05D008258 ORTHO05D003386 1.1e-06 59.7 104 37.5


User provided reference genes

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