Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.111 Acer truncatum HOM05D001842 ORTHO05D001849 1.2e-95 353.6 234 100.0
Ciclev10000095m.g Citrus clementina HOM05D001842 ORTHO05D001849 5.0e-30 135.6 95 71.6
Cpa.g.sc26.167 Carica papaya HOM05D001842 ORTHO05D001849 6.5e-30 135.2 103 63.1
Thecc.08G062300 Theobroma cacao HOM05D001842 ORTHO05D001849 2.7e-28 129.8 88 72.7
Duzib093G1115 Durio zibethinus HOM05D001842 ORTHO05D001849 6.7e-27 125.2 88 70.5
Gohir.A01G103800 Gossypium hirsutum HOM05D001842 ORTHO05D001849 2.6e-26 123.2 89 71.9
Gohir.D01G089100 Gossypium hirsutum HOM05D001842 ORTHO05D001849 2.6e-26 123.2 89 71.9
Gorai.002G114800 Gossypium raimondii HOM05D001842 ORTHO05D001849 2.8e-25 119.8 89 70.8
COL.COLO4_07214 Corchorus olitorius HOM05D001842 ORTHO05D001849 2.0e-23 113.6 95 66.3
RcHm_v2.0_Chr7g0215891 Rosa chinensis HOM05D001842 ORTHO05D001849 3.5e-23 112.8 90 64.4
CANSAT11G0401 Cannabis sativa HOM05D001842 ORTHO05D001849 7.7e-23 111.7 88 65.9
MD06G1007400 Malus domestica HOM05D001842 ORTHO05D001849 1.7e-22 110.5 95 60.0
MELO3C017039.2 Cucumis melo HOM05D001842 ORTHO05D001849 5.0e-22 109.0 86 62.8
CsaV3_4G037410 Cucumis sativus L. HOM05D001842 ORTHO05D001849 5.0e-22 109.0 86 62.8
THA.LOC104813747 Tarenaya hassleriana HOM05D001842 ORTHO05D001849 1.1e-21 107.8 92 63.0
ClCG11G018830 Citrullus lanatus HOM05D001842 ORTHO05D001849 1.9e-21 107.1 86 61.6
Manes.18G003700 Manihot esculenta HOM05D001842 ORTHO05D001849 9.4e-21 104.8 81 63.0
Dinv31963 Davidia involucrata HOM05D001842 ORTHO05D001849 3.6e-20 102.8 94 61.7
Hma1.2p1_0612F.1_g188880 Hydrangea macrophylla HOM05D001842 ORTHO05D001849 4.7e-20 102.4 94 60.6
TWI56G1388 Tripterygium wilfordii HOM05D001842 ORTHO05D001849 6.1e-20 102.1 89 58.4
THA.LOC104809853 Tarenaya hassleriana HOM05D001842 ORTHO05D001849 5.2e-19 99.0 94 63.8
FAN08G1553 Fragaria x ananassa HOM05D001842 ORTHO05D001849 8.8e-19 98.2 88 60.2
BcaC05g25980 Brassica carinata HOM05D001842 ORTHO05D001849 4.4e-18 95.9 115 53.9
Nn6g31683 Nelumbo nucifera HOM05D001842 ORTHO05D001849 5.7e-18 95.5 89 58.4
MD05G1136400 Malus domestica HOM05D001842 ORTHO05D001849 9.8e-18 94.7 174 43.1
TAR376G0454 Trochodendron aralioides HOM05D001842 ORTHO05D001849 9.8e-18 94.7 89 58.4
Eucgr.F01786 Eucalyptus grandis HOM05D001842 ORTHO05D001849 1.3e-17 94.4 87 57.5
Sp1g18460 Schrenkiella parvula HOM05D001842 ORTHO05D001849 1.3e-17 94.4 89 64.0
Aa31LG7G4920 Aethionema arabicum HOM05D001842 ORTHO05D001849 2.2e-17 93.6 85 62.4
Nn5g30998 Nelumbo nucifera HOM05D001842 ORTHO05D001849 2.2e-17 93.6 89 57.3
FvH4_5g25580 Fragaria vesca HOM05D001842 ORTHO05D001849 2.8e-17 93.2 88 59.1
Aqoxy6G01606 Aquilegia oxysepala HOM05D001842 ORTHO05D001849 4.8e-17 92.4 89 57.3
CiPaw.05G092800 Carya illinoinensis HOM05D001842 ORTHO05D001849 4.8e-17 92.4 107 50.5
BraA08t34863Z Brassica rapa HOM05D001842 ORTHO05D001849 6.3e-17 92.0 95 58.9
TAR628G0545 Trochodendron aralioides HOM05D001842 ORTHO05D001849 6.3e-17 92.0 100 55.0
Potri.002G008600 Populus trichocarpa HOM05D001842 ORTHO05D001849 8.3e-17 91.7 80 58.8
Sabra02G0006400 Salix brachista HOM05D001842 ORTHO05D001849 8.3e-17 91.7 80 57.5
GSVIVG01013392001 Vitis vinifera HOM05D001842 ORTHO05D001849 8.3e-17 91.7 91 60.4
CiPaw.06G115800 Carya illinoinensis HOM05D001842 ORTHO05D001849 1.1e-16 91.3 93 53.8
FAN04G2289 Fragaria x ananassa HOM05D001842 ORTHO05D001849 1.1e-16 91.3 88 58.0
QL02p015109 Quercus lobata HOM05D001842 ORTHO05D001849 4.1e-16 89.4 82 57.3
A08p29280 Brassica napus HOM05D001842 ORTHO05D001849 5.4e-16 89.0 94 58.5
CiPaw.07G136200 Carya illinoinensis HOM05D001842 ORTHO05D001849 5.4e-16 89.0 82 58.5
DCAR_013929 Daucus carota HOM05D001842 ORTHO05D001849 5.4e-16 89.0 93 59.1
AL1G33750 Arabidopsis lyrata HOM05D001842 ORTHO05D001849 7.0e-16 88.6 89 60.7
Thhalv10006674m.g Eutrema salsugineum HOM05D001842 ORTHO05D001849 7.0e-16 88.6 90 61.1
Psat5g009840 Pisum sativum HOM05D001842 ORTHO05D001849 7.0e-16 88.6 95 55.8
Carub.0001s2021 Capsella rubella HOM05D001842 ORTHO05D001849 9.1e-16 88.2 89 61.8
CiPaw.08G075300 Carya illinoinensis HOM05D001842 ORTHO05D001849 9.1e-16 88.2 81 58.0
AT1G20760 Arabidopsis thaliana HOM05D001842 ORTHO05D001849 1.2e-15 87.8 89 60.7
Medtr3g115640 Medicago truncatula HOM05D001842 ORTHO05D001849 1.6e-15 87.4 95 54.7
VMungo1309G0061 Vigna mungo HOM05D001842 ORTHO05D001849 1.6e-15 87.4 92 55.4
BraA07t29291Z Brassica rapa HOM05D001842 ORTHO05D001849 2.0e-15 87.0 92 62.0
CARHR021200 Cardamine hirsuta HOM05D001842 ORTHO05D001849 2.7e-15 86.7 89 60.7
GSVIVG01023872001 Vitis vinifera HOM05D001842 ORTHO05D001849 2.7e-15 86.7 89 52.8
BcaC06g34833 Brassica carinata HOM05D001842 ORTHO05D001849 3.5e-15 86.3 92 62.0
A07p15500 Brassica napus HOM05D001842 ORTHO05D001849 3.5e-15 86.3 92 62.0
C07p22830 Brassica napus HOM05D001842 ORTHO05D001849 3.5e-15 86.3 92 62.0
BolC7t42821H Brassica oleracea HOM05D001842 ORTHO05D001849 3.5e-15 86.3 157 51.0
PSO541G1162 Papaver somniferum HOM05D001842 ORTHO05D001849 3.5e-15 86.3 76 60.5
BcaB03g14302 Brassica carinata HOM05D001842 ORTHO05D001849 5.9e-15 85.5 91 61.5
Manes.05G124400 Manihot esculenta HOM05D001842 ORTHO05D001849 5.9e-15 85.5 81 55.6
A06p16700 Brassica napus HOM05D001842 ORTHO05D001849 2.3e-14 83.6 90 57.8
C05p19300 Brassica napus HOM05D001842 ORTHO05D001849 2.3e-14 83.6 90 57.8
BolC5t30637H Brassica oleracea HOM05D001842 ORTHO05D001849 2.3e-14 83.6 90 57.8
Cfa014111 Carpinus fangiana HOM05D001842 ORTHO05D001849 2.3e-14 83.6 88 55.7
Lalb_Chr11g0061511 Lupinus albus HOM05D001842 ORTHO05D001849 2.9e-14 83.2 87 56.3
BraA06t24785Z Brassica rapa HOM05D001842 ORTHO05D001849 5.0e-14 82.4 90 56.7
BcaB07g32071 Brassica carinata HOM05D001842 ORTHO05D001849 6.5e-14 82.0 91 59.3
MBI05_g33293_MAGBIO Magnolia biondii HOM05D001842 ORTHO05D001849 6.5e-14 82.0 87 51.7
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 8.6e-14 81.6 98 51.0
MBI08_g37961_MAGBIO Magnolia biondii HOM05D001842 ORTHO05D001849 1.5e-13 80.9 93 50.5
MD10G1140800 Malus domestica HOM05D001842 ORTHO05D001849 1.5e-13 80.9 90 52.2
Cc10_g00500 Coffea canephora HOM05D001842 ORTHO05D001849 1.9e-13 80.5 74 59.5
C08p20340 Brassica napus HOM05D001842 ORTHO05D001849 2.5e-13 80.1 95 54.7
BolC8t49662H Brassica oleracea HOM05D001842 ORTHO05D001849 2.5e-13 80.1 95 54.7
CAN.G311.131 Capsicum annuum HOM05D001842 ORTHO05D001849 2.5e-13 80.1 99 51.5
Phvul.009G012300 Phaseolus vulgaris HOM05D001842 ORTHO05D001849 2.5e-13 80.1 96 51.0
TPR.G38237 Trifolium pratense HOM05D001842 ORTHO05D001849 2.5e-13 80.1 90 52.2
MD05G1135500 Malus domestica HOM05D001842 ORTHO05D001849 3.2e-13 79.7 89 52.8
Glyma.06G016700 Glycine max HOM05D001842 ORTHO05D001849 4.2e-13 79.3 110 47.3
PSO675G7298 Papaver somniferum HOM05D001842 ORTHO05D001849 5.5e-13 79.0 76 55.3
arahy.Tifrunner.gnm1.ann1.3BY6RX Arachis hypogaea HOM05D001842 ORTHO05D001849 7.2e-13 78.6 116 45.7
Lalb_Chr23g0265681 Lupinus albus HOM05D001842 ORTHO05D001849 7.2e-13 78.6 87 52.9
Lalb_Chr04g0246921 Lupinus albus HOM05D001842 ORTHO05D001849 1.6e-12 77.4 86 52.3
FAN13G2297 Fragaria x ananassa HOM05D001842 ORTHO05D001849 2.1e-12 77.0 64 59.4
Sc02g0009180 Simmondsia chinensis HOM05D001842 ORTHO05D001849 2.1e-12 77.0 84 51.2
FAN18G3820 Fragaria x ananassa HOM05D001842 ORTHO05D001849 6.1e-12 75.5 64 57.8
Lj4C8G7 Lonicera japonica HOM05D001842 ORTHO05D001849 1.0e-11 74.7 83 54.2
BcaB03g12856 Brassica carinata HOM05D001842 ORTHO05D001849 1.4e-11 74.3 63 68.3
AUR62042905 Chenopodium quinoa HOM05D001842 ORTHO05D001849 1.4e-11 74.3 85 52.9
Hma1.2p1_0699F.1_g205520 Hydrangea macrophylla HOM05D001842 ORTHO05D001849 1.8e-11 73.9 92 50.0
MD05G1136500 Malus domestica HOM05D001842 ORTHO05D001849 1.8e-11 73.9 156 35.3
Lsat_1_v5_gn_2_1961 Lactuca sativa HOM05D001842 ORTHO05D001849 2.3e-11 73.6 84 50.0
Ah.00g001000 Amaranthus hybridus HOM05D001842 ORTHO05D001849 3.0e-11 73.2 98 45.9
FvH4_2g16750 Fragaria vesca HOM05D001842 ORTHO05D001849 3.0e-11 73.2 94 44.7
FAN24G0597 Fragaria x ananassa HOM05D001842 ORTHO05D001849 3.0e-11 73.2 94 44.7
Glyma.04G016600 Glycine max HOM05D001842 ORTHO05D001849 3.0e-11 73.2 110 45.5
PGR083G1188 Punica granatum HOM05D001842 ORTHO05D001849 3.0e-11 73.2 83 49.4
Peaxi162Scf00680g00017 Petunia axillaris HOM05D001842 ORTHO05D001849 5.2e-11 72.4 81 54.3
EL10Ac1g01913 Beta vulgaris HOM05D001842 ORTHO05D001849 8.8e-11 71.6 85 51.8
Psat2g000840 Pisum sativum HOM05D001842 ORTHO05D001849 8.8e-11 71.6 106 46.2
AUR62035136 Chenopodium quinoa HOM05D001842 ORTHO05D001849 1.2e-10 71.2 85 51.8
Hma1.2p1_0085F.1_g044600 Hydrangea macrophylla HOM05D001842 ORTHO05D001849 1.2e-10 71.2 120 42.5
Lj1g0018894 Lotus japonicus HOM05D001842 ORTHO05D001849 1.2e-10 71.2 91 49.5
RcHm_v2.0_Chr6g0280871 Rosa chinensis HOM05D001842 ORTHO05D001849 1.2e-10 71.2 94 44.7
Actinidia28609 Actinidia chinensis HOM05D001842 ORTHO05D001849 1.5e-10 70.9 90 46.7
FAN27G0714 Fragaria x ananassa HOM05D001842 ORTHO05D001849 1.5e-10 70.9 91 44.0
HanXRQChr14g0427401 Helianthus annuus HOM05D001842 ORTHO05D001849 1.5e-10 70.9 87 46.0
LjContig00081g0008818 Lotus japonicus HOM05D001842 ORTHO05D001849 1.5e-10 70.9 82 51.2
Nitab4.5_0010095g0010 Nicotiana tabacum HOM05D001842 ORTHO05D001849 1.5e-10 70.9 81 51.9
Os03g0130500 Oryza sativa ssp. japonica HOM05D001842 ORTHO05D001849 1.5e-10 70.9 93 49.5
Haze_02003 Corylus avellana HOM05D001842 ORTHO05D001849 2.0e-10 70.5 117 38.5
Cfa005365 Carpinus fangiana HOM05D001842 ORTHO05D001849 2.6e-10 70.1 119 37.8
TPR.G18637 Trifolium pratense HOM05D001842 ORTHO05D001849 2.6e-10 70.1 82 51.2
MELO3C013251.2 Cucumis melo HOM05D001842 ORTHO05D001849 3.4e-10 69.7 90 45.6
Potri.005G253000 Populus trichocarpa HOM05D001842 ORTHO05D001849 3.4e-10 69.7 72 50.0
Sed0009695 Sechium edule HOM05D001842 ORTHO05D001849 3.4e-10 69.7 81 49.4
Actinidia37913 Actinidia chinensis HOM05D001842 ORTHO05D001849 4.4e-10 69.3 90 47.8
CsaV3_7G001880 Cucumis sativus L. HOM05D001842 ORTHO05D001849 5.7e-10 68.9 90 45.6
Sopen04g036180 Solanum pennellii HOM05D001842 ORTHO05D001849 5.7e-10 68.9 81 51.9
Prupe.8G179600 Prunus persica HOM05D001842 ORTHO05D001849 7.5e-10 68.6 88 46.6
unitig_22.g5814 Utricularia gibba HOM05D001842 ORTHO05D001849 7.5e-10 68.6 79 50.6
PGSC0003DMG400009911 Solanum tuberosum HOM05D001842 ORTHO05D001849 1.3e-09 67.8 77 55.8
Ca_15404_v3 Cicer arietinum L. HOM05D001842 ORTHO05D001849 1.7e-09 67.4 62 54.8
Ca_29885_v3 Cicer arietinum L. HOM05D001842 ORTHO05D001849 1.7e-09 67.4 62 54.8
ECA238G0776 Erigeron canadensis HOM05D001842 ORTHO05D001849 1.7e-09 67.4 88 45.5
Ca_06502_v3 Cicer arietinum L. HOM05D001842 ORTHO05D001849 2.8e-09 66.6 82 50.0
Medtr5g099170 Medicago truncatula HOM05D001842 ORTHO05D001849 2.8e-09 66.6 98 43.9
arahy.Tifrunner.gnm1.ann1.649J27 Arachis hypogaea HOM05D001842 ORTHO05D001849 3.7e-09 66.2 79 48.1
Glyma.14G001200 Glycine max HOM05D001842 ORTHO05D001849 3.7e-09 66.2 82 50.0
ATR0807G019 Amborella trichopoda HOM05D001842 ORTHO05D001849 4.9e-09 65.9 77 54.5
Hund05092 Selenicereus undatus HOM05D001842 ORTHO05D001849 4.9e-09 65.9 84 46.4
arahy.Tifrunner.gnm1.ann1.1FV09I Arachis hypogaea HOM05D001842 ORTHO05D001849 6.3e-09 65.5 79 48.1
Glyma.02G311333 Glycine max HOM05D001842 ORTHO05D001849 6.3e-09 65.5 82 48.8
CDE02G2542 Ceratophyllum demersum HOM05D001842 ORTHO05D001849 8.3e-09 65.1 95 43.2
Oeu026108.1 Olea europaea HOM05D001842 ORTHO05D001849 8.3e-09 65.1 95 49.5
Eucgr.G01875 Eucalyptus grandis HOM05D001842 ORTHO05D001849 1.4e-08 64.3 130 38.5
ClCG02G003430 Citrullus lanatus HOM05D001842 ORTHO05D001849 1.8e-08 63.9 95 43.2
Atru.chr13.108 Acer truncatum HOM05D001842 ORTHO05D001849 2.4e-08 63.5 107 56.1
MSTRG.3637 Avicennia marina HOM05D001842 ORTHO05D001849 2.4e-08 63.5 117 40.2
Lj4A809G47 Lonicera japonica HOM05D001842 ORTHO05D001849 2.4e-08 63.5 103 40.8
Phvul.008G292100 Phaseolus vulgaris HOM05D001842 ORTHO05D001849 4.1e-08 62.8 82 47.6
Dinv28318 Davidia involucrata HOM05D001842 ORTHO05D001849 7.0e-08 62.0 120 36.7
Rhsim06G0005300 Rhododendron simsii HOM05D001842 ORTHO05D001849 9.2e-08 61.6 91 44.0
Haze_22829 Corylus avellana HOM05D001842 ORTHO05D001849 1.2e-07 61.2 90 46.7
VMungo0647G1618 Vigna mungo HOM05D001842 ORTHO05D001849 1.2e-07 61.2 82 47.6
vmacro21789 Vaccinium macrocarpon HOM05D001842 ORTHO05D001849 1.6e-07 60.8 80 48.8
arahy.Tifrunner.gnm1.ann1.84FHQN Arachis hypogaea HOM05D001842 ORTHO05D001849 2.0e-07 60.5 84 44.0
QL11p056280 Quercus lobata HOM05D001842 ORTHO05D001849 2.0e-07 60.5 128 35.2
MSTRG.15602 Avicennia marina HOM05D001842 ORTHO05D001849 3.5e-07 59.7 105 40.0
CDE04G2613 Ceratophyllum demersum HOM05D001842 ORTHO05D001849 3.5e-07 59.7 97 43.3
Sed0023090 Sechium edule HOM05D001842 ORTHO05D001849 3.5e-07 59.7 89 43.8
Peaxi162Scf00580g00016 Petunia axillaris HOM05D001842 ORTHO05D001849 4.5e-07 59.3 58 56.9
MSTRG.988 Avicennia marina HOM05D001842 ORTHO05D001849 5.9e-07 58.9 85 47.1
SHI07965 Sapria himalayana HOM05D001842 ORTHO05D001849 5.9e-07 58.9 90 36.7
arahy.Tifrunner.gnm1.ann1.RT0S28 Arachis hypogaea HOM05D001842 ORTHO05D001849 7.8e-07 58.5 84 42.9
Sed0008264 Sechium edule HOM05D001842 ORTHO05D001849 7.8e-07 58.5 81 46.9
HPP92_022722 Vanilla planifolia HOM05D001842 ORTHO05D001849 1.0e-06 58.2 85 48.2
CDE04G3412 Ceratophyllum demersum HOM05D001842 ORTHO05D001849 1.3e-06 57.8 96 39.6
CSS0030981 Camellia sinensis var. sinensis HOM05D001842 ORTHO05D001849 1.7e-06 57.4 84 46.4
SGA_v2.0_scaffold319G48553 Striga asiatica HOM05D001842 ORTHO05D001849 2.3e-06 57.0 82 45.1
Oeu012542.1 Olea europaea HOM05D001842 ORTHO05D001849 5.0e-06 55.8 67 44.8
CDE07G1300 Ceratophyllum demersum HOM05D001842 ORTHO05D001849 8.6e-06 55.1 88 40.9
Zm00001eb402480 Zea mays HOM05D001842 ORTHO05D001849 8.6e-06 55.1 84 46.4


User provided reference genes

Program Settings