Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 6.2e-88 327.4 163 100.0
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 6.1e-59 231.1 151 80.8
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 7.7e-54 214.2 151 74.2
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 7.7e-54 214.2 151 74.2
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 2.2e-53 212.6 151 72.8
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 2.9e-53 212.2 151 73.5
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 1.1e-52 210.3 151 71.5
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 1.5e-52 209.9 151 72.2
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 1.9e-52 209.5 151 70.9
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 1.9e-52 209.5 150 72.0
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 3.2e-52 208.8 151 72.8
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 4.2e-52 208.4 151 72.8
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 5.5e-52 208.0 151 71.5
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 7.2e-52 207.6 151 72.2
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 9.4e-52 207.2 151 70.9
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 9.4e-52 207.2 151 72.2
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 9.4e-52 207.2 151 71.5
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 9.4e-52 207.2 151 70.2
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 1.2e-51 206.8 151 70.9
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 1.2e-51 206.8 151 69.5
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.7e-51 205.7 151 69.5
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.7e-51 205.7 151 69.5
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.7e-51 205.7 151 69.5
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 3.6e-51 205.3 151 69.5
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 4.7e-51 204.9 151 68.9
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 4.7e-51 204.9 151 70.9
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 4.7e-51 204.9 151 69.5
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 6.1e-51 204.5 150 69.3
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 8.0e-51 204.1 151 68.2
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 1.0e-50 203.8 151 70.2
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 1.0e-50 203.8 151 70.2
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 2.3e-50 202.6 151 69.5
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 3.0e-50 202.2 151 68.9
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 8.8e-50 200.7 151 70.2
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 1.5e-49 199.9 151 69.5
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 3.3e-49 198.7 151 69.5
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 5.7e-49 198.0 152 69.7
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 9.7e-49 197.2 151 69.5
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 1.3e-48 196.8 151 67.5
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 3.7e-48 195.3 151 66.9
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 6.3e-48 194.5 151 66.2
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 6.3e-48 194.5 151 66.2
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 8.2e-48 194.1 151 67.5
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 1.4e-47 193.4 151 66.9
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 1.4e-47 193.4 149 65.8
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 1.8e-47 193.0 151 68.2
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 1.8e-47 193.0 150 64.0
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 1.8e-47 193.0 155 65.2
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 1.8e-47 193.0 151 66.2
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 2.4e-47 192.6 155 65.2
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 2.4e-47 192.6 155 65.2
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 3.1e-47 192.2 151 68.9
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 3.1e-47 192.2 155 65.2
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 4.1e-47 191.8 150 66.7
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 5.3e-47 191.4 151 65.6
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 5.3e-47 191.4 151 65.6
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 7.0e-47 191.0 150 64.7
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 7.0e-47 191.0 149 65.1
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 9.1e-47 190.7 151 65.6
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 9.1e-47 190.7 150 64.7
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 1.6e-46 189.9 151 64.9
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 1.6e-46 189.9 151 66.2
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 1.6e-46 189.9 150 62.7
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 2.0e-46 189.5 150 64.7
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 2.0e-46 189.5 150 64.0
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 2.6e-46 189.1 155 64.5
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 2.6e-46 189.1 151 66.9
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 3.5e-46 188.7 152 65.8
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 3.5e-46 188.7 152 65.8
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 3.5e-46 188.7 150 64.0
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 4.5e-46 188.3 150 64.7
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 5.9e-46 188.0 149 65.8
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 5.9e-46 188.0 150 62.0
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 3.8e-45 185.3 150 61.3
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 6.5e-45 184.5 150 62.0
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 1.9e-44 183.0 156 62.2
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 1.9e-44 183.0 151 65.6
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 2.5e-44 182.6 151 62.3
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 4.2e-44 181.8 150 64.0
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 4.2e-44 181.8 150 64.0
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 4.2e-44 181.8 153 62.1
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 7.2e-44 181.0 184 55.4
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 1.2e-43 180.3 161 60.9
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 1.6e-43 179.9 150 60.0
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 1.6e-43 179.9 150 60.0
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 8.0e-43 177.6 151 60.9
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 1.0e-42 177.2 185 54.1
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 2.3e-42 176.0 150 62.7
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 2.3e-42 176.0 150 60.7
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 4.0e-42 175.3 151 64.2
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 4.0e-42 175.3 149 63.1
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 8.3e-40 167.5 151 59.6
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 7.0e-39 164.5 150 59.3
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 2.0e-38 162.9 150 58.7
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 4.5e-38 161.8 117 71.8
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 5.9e-38 161.4 151 55.0
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 3.8e-37 158.7 150 53.3
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 5.0e-37 158.3 150 53.3
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 5.5e-36 154.8 123 68.3
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 1.3e-32 143.7 154 49.4
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 2.2e-32 142.9 156 51.9
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 2.2e-32 142.9 156 51.9
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 2.8e-32 142.5 107 67.3
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 1.4e-31 140.2 150 46.0
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 4.2e-28 128.6 106 61.3
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 3.0e-26 122.5 150 44.0
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 6.3e-24 114.8 81 70.4
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 9.2e-23 110.9 152 40.8
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 1.6e-22 110.2 70 78.6
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 1.3e-21 107.1 153 37.9
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.5e-20 103.6 74 66.2
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 2.5e-20 102.8 64 73.4
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 2.1e-19 99.8 59 71.2
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 2.1e-19 99.8 59 71.2
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 6.8e-18 94.7 70 68.6
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 2.0e-17 93.2 106 45.3
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 1.3e-16 90.5 72 66.7
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 3.0e-13 79.3 55 65.5
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 1.2e-11 73.9 56 57.1
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 8.0e-11 71.2 44 72.7
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 1.5e-09 67.0 68 55.9
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 2.6e-09 66.2 46 69.6
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 3.7e-08 62.4 44 68.2
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 1.6e-06 57.0 129 33.3


User provided reference genes

Program Settings