Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.94 Acer truncatum HOM05D007292 ORTHO05D009084 1.2e-127 459.9 252 100.0
Ciclev10032544m.g Citrus clementina HOM05D007292 ORTHO05D009084 5.9e-77 291.6 252 71.0
Thecc.10G013900 Theobroma cacao HOM05D007292 ORTHO05D009084 3.0e-65 252.7 256 62.1
Duzib114G0074 Durio zibethinus HOM05D007292 ORTHO05D009084 1.3e-63 247.3 252 62.7
Dinv10605 Davidia involucrata HOM05D007292 ORTHO05D009084 1.8e-62 243.4 258 59.7
TAR633G2478 Trochodendron aralioides HOM05D007292 ORTHO05D009084 1.5e-61 240.4 257 60.7
GSVIVG01032790001 Vitis vinifera HOM05D007292 ORTHO05D009084 3.5e-61 239.2 258 60.5
Manes.07G131600 Manihot esculenta HOM05D007292 ORTHO05D009084 1.3e-60 237.3 258 60.1
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 2.0e-56 223.4 241 59.3
TWI09G0172 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 2.6e-56 223.0 258 57.0
QL08p063404 Quercus lobata HOM05D007292 ORTHO05D009084 7.4e-56 221.5 257 56.4
CiPaw.01G300300 Carya illinoinensis HOM05D007292 ORTHO05D009084 9.7e-56 221.1 257 57.2
Gohir.A05G330800 Gossypium hirsutum HOM05D007292 ORTHO05D009084 9.7e-56 221.1 252 57.5
Cfa001300 Carpinus fangiana HOM05D007292 ORTHO05D009084 2.8e-55 219.5 243 58.4
Gohir.D04G069400 Gossypium hirsutum HOM05D007292 ORTHO05D009084 8.2e-55 218.0 252 57.5
Cpa.g.sc19.157 Carica papaya HOM05D007292 ORTHO05D009084 1.1e-54 217.6 258 55.4
Gorai.012G078000 Gossypium raimondii HOM05D007292 ORTHO05D009084 4.1e-54 215.7 253 56.9
CsaV3_5G010290 Cucumis sativus L. HOM05D007292 ORTHO05D009084 5.9e-53 211.8 257 55.6
Prupe.2G252500 Prunus persica HOM05D007292 ORTHO05D009084 7.7e-53 211.5 258 56.6
MELO3C018364.2 Cucumis melo HOM05D007292 ORTHO05D009084 1.0e-52 211.1 256 55.5
FAN01G0766 Fragaria x ananassa HOM05D007292 ORTHO05D009084 5.0e-52 208.8 258 56.6
PGSC0003DMG400027726 Solanum tuberosum HOM05D007292 ORTHO05D009084 8.5e-52 208.0 256 52.7
VMungo1383G3483 Vigna mungo HOM05D001399 ORTHO05D001670 8.5e-52 208.0 260 52.3
FvH4_7g24710 Fragaria vesca HOM05D007292 ORTHO05D009084 1.1e-51 207.6 266 54.9
FAN06G1000 Fragaria x ananassa HOM05D007292 ORTHO05D009084 1.1e-51 207.6 266 54.9
FAN10G1098 Fragaria x ananassa HOM05D007292 ORTHO05D009084 1.1e-51 207.6 266 54.5
Potri.010G186800 Populus trichocarpa HOM05D007292 ORTHO05D009084 1.5e-51 207.2 251 55.0
Glyma.11G231200 Glycine max HOM05D007292 ORTHO05D009084 3.2e-51 206.1 259 54.1
Glyma.18G025900 Glycine max HOM05D007292 ORTHO05D009084 5.5e-51 205.3 258 53.9
CSS0010989 Camellia sinensis var. sinensis HOM05D007292 ORTHO05D009084 9.4e-51 204.5 258 55.4
Sopen03g026090 Solanum pennellii HOM05D007292 ORTHO05D009084 2.1e-50 203.4 251 53.8
Potri.008G070700 Populus trichocarpa HOM05D007292 ORTHO05D009084 3.0e-49 199.5 257 53.3
Actinidia00958 Actinidia chinensis HOM05D007292 ORTHO05D009084 6.8e-49 198.4 258 53.1
TWI53G0916 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 6.8e-49 198.4 256 51.6
Nitab4.5_0002701g0020 Nicotiana tabacum HOM05D007292 ORTHO05D009084 1.5e-48 197.2 253 50.6
ClCG07G004350 Citrullus lanatus HOM05D007292 ORTHO05D009084 3.4e-48 196.1 247 53.4
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 4.4e-48 195.7 247 55.5
Eucgr.J00191 Eucalyptus grandis HOM05D007292 ORTHO05D009084 9.7e-48 194.5 259 52.5
MD01G1154900 Malus domestica HOM05D007292 ORTHO05D009084 9.7e-48 194.5 250 53.6
Solyc03g095990.1 Solanum lycopersicum HOM05D007292 ORTHO05D009084 2.2e-47 193.4 211 57.3
Phvul.001G244400 Phaseolus vulgaris HOM05D007292 ORTHO05D009084 6.3e-47 191.8 260 50.4
RcHm_v2.0_Chr1g0370551 Rosa chinensis HOM05D007292 ORTHO05D009084 8.3e-47 191.4 260 51.9
vmacro10031 Vaccinium macrocarpon HOM05D007292 ORTHO05D009084 7.0e-46 188.3 253 50.6
TPR.G11203 Trifolium pratense HOM05D007292 ORTHO05D009084 1.7e-44 183.7 257 49.8
CANSAT56G1912 Cannabis sativa HOM05D007292 ORTHO05D009084 5.0e-44 182.2 264 51.5
Medtr3g070960 Medicago truncatula HOM05D007292 ORTHO05D009084 5.0e-44 182.2 257 49.4
Nitab4.5_0000487g0050 Nicotiana tabacum HOM05D007292 ORTHO05D009084 6.5e-44 181.8 241 49.8
Sed0024586 Sechium edule HOM05D007292 ORTHO05D009084 6.5e-44 181.8 255 49.0
Psat5g129440 Pisum sativum HOM05D007292 ORTHO05D009084 1.1e-43 181.0 257 50.2
Lalb_Chr08g0231651 Lupinus albus HOM05D007292 ORTHO05D009084 4.2e-43 179.1 237 50.2
Peaxi162Scf00484g00003 Petunia axillaris HOM05D007292 ORTHO05D009084 5.5e-43 178.7 207 52.7
Rhsim09G0178500 Rhododendron simsii HOM05D007292 ORTHO05D009084 5.5e-43 178.7 236 50.4
Actinidia13950 Actinidia chinensis HOM05D007292 ORTHO05D009084 6.1e-42 175.3 208 57.2
arahy.Tifrunner.gnm1.ann1.W7USAB Arachis hypogaea HOM05D007292 ORTHO05D009084 8.0e-42 174.9 227 52.0
arahy.Tifrunner.gnm1.ann1.RI3S0A Arachis hypogaea HOM05D007292 ORTHO05D009084 1.0e-41 174.5 227 51.5
PGR044G1044 Punica granatum HOM05D007292 ORTHO05D009084 1.0e-41 174.5 260 48.1
Sabra08G0052000 Salix brachista HOM05D007292 ORTHO05D009084 4.0e-41 172.6 214 52.8
Ca_15135_v3 Cicer arietinum L. HOM05D007292 ORTHO05D009084 5.2e-41 172.2 259 47.9
TAR636G1797 Trochodendron aralioides HOM05D007292 ORTHO05D009084 1.5e-40 170.6 259 49.8
Lj6g0005846 Lotus japonicus HOM05D007292 ORTHO05D009084 2.0e-40 170.2 259 49.4
Cc08_g07220 Coffea canephora HOM05D007292 ORTHO05D009084 4.4e-40 169.1 200 54.0
Hund13879 Selenicereus undatus HOM05D007292 ORTHO05D009084 4.8e-39 165.6 239 48.1
MD07G1224000 Malus domestica HOM05D007292 ORTHO05D009084 6.3e-39 165.2 254 46.9
AUR62022909 Chenopodium quinoa HOM05D007292 ORTHO05D009084 4.1e-38 162.5 238 47.9
ATR0681G254 Amborella trichopoda HOM05D007292 ORTHO05D009084 5.4e-38 162.2 210 52.4
Ah.16g103670 Amaranthus hybridus HOM05D007292 ORTHO05D009084 7.0e-38 161.8 252 46.4
EL10Ac2g04856 Beta vulgaris HOM05D007292 ORTHO05D009084 7.0e-38 161.8 246 45.1
Hma1.2p1_0145F.1_g065370 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 1.1e-35 154.5 105 77.1
Hma1.2p1_2705F.1_g327175 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 1.1e-35 154.5 105 77.1
Aqoxy6G01833 Aquilegia oxysepala HOM05D007292 ORTHO05D009084 1.6e-34 150.6 211 47.4
Sc10g0002470 Simmondsia chinensis HOM05D007292 ORTHO05D009084 2.8e-34 149.8 131 62.6
Lsat_1_v5_gn_2_124081 Lactuca sativa HOM05D007292 ORTHO05D009084 6.1e-34 148.7 250 46.8
PSO384G0417 Papaver somniferum HOM05D007292 ORTHO05D009084 6.1e-34 148.7 262 43.1
THA.LOC104824327 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 6.1e-34 148.7 259 45.2
ECA238G0254 Erigeron canadensis HOM05D007292 ORTHO05D009084 1.4e-33 147.5 232 47.4
SalBow5G4600 Salvia bowleyana HOM05D007292 ORTHO05D009084 1.8e-33 147.1 251 46.2
BcaB01g00041 Brassica carinata HOM05D007292 ORTHO05D009084 5.2e-33 145.6 162 54.9
Aa31LG10G10950 Aethionema arabicum HOM05D007292 ORTHO05D009084 6.8e-33 145.2 155 58.7
DCAR_011829 Daucus carota HOM05D007292 ORTHO05D009084 5.7e-32 142.1 239 43.5
Sp5g06520 Schrenkiella parvula HOM05D007292 ORTHO05D009084 7.5e-32 141.7 149 57.0
AL5G37290 Arabidopsis lyrata HOM05D007292 ORTHO05D009084 1.3e-31 141.0 138 60.9
C04p36460 Brassica napus HOM05D007292 ORTHO05D009084 1.7e-31 140.6 126 64.3
BolC4t25149H Brassica oleracea HOM05D007292 ORTHO05D009084 1.7e-31 140.6 126 64.3
THA.LOC104811239 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 1.7e-31 140.6 260 42.3
BcaC02g09799 Brassica carinata HOM05D007292 ORTHO05D009084 2.2e-31 140.2 126 64.3
A09p48960 Brassica napus HOM05D007292 ORTHO05D009084 8.3e-31 138.3 114 68.4
C08p31330 Brassica napus HOM05D007292 ORTHO05D009084 8.3e-31 138.3 114 68.4
BolC8t50754H Brassica oleracea HOM05D007292 ORTHO05D009084 8.3e-31 138.3 114 68.4
BraA09t40351Z Brassica rapa HOM05D007292 ORTHO05D009084 8.3e-31 138.3 114 68.4
SalBow5G0252 Salvia bowleyana HOM05D007292 ORTHO05D009084 1.1e-30 137.9 251 43.4
HanXRQChr14g0459531 Helianthus annuus HOM05D007292 ORTHO05D009084 1.4e-30 137.5 134 61.2
AT3G56010 Arabidopsis thaliana HOM05D007292 ORTHO05D009084 1.8e-30 137.1 251 43.4
Sabra10G0144000 Salix brachista HOM05D007292 ORTHO05D009084 3.2e-30 136.3 178 52.8
BraA04t16126Z Brassica rapa HOM05D007292 ORTHO05D009084 4.1e-30 136.0 159 54.7
Thhalv10006239m.g Eutrema salsugineum HOM05D007292 ORTHO05D009084 5.4e-30 135.6 149 57.7
Carub.0005s2275 Capsella rubella HOM05D007292 ORTHO05D009084 9.2e-30 134.8 251 42.6
Migut.F01485 Erythranthe guttata HOM05D007292 ORTHO05D009084 9.2e-30 134.8 256 38.3
Hma1.2p1_2705F.1_g327170 Hydrangea macrophylla HOM05D001399 ORTHO05D001670 9.2e-30 134.8 184 51.1
A04p04080 Brassica napus HOM05D007292 ORTHO05D009084 1.2e-29 134.4 121 64.5
CARHR166090 Cardamine hirsuta HOM05D007292 ORTHO05D009084 3.9e-28 129.4 210 44.8
Nn2g13181 Nelumbo nucifera HOM05D007292 ORTHO05D009084 5.6e-27 125.6 223 45.7
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 1.2e-26 124.4 162 53.7
Os03g0293100 Oryza sativa ssp. japonica HOM05D007292 ORTHO05D009084 1.3e-23 114.4 139 52.5
Zm00001eb013500 Zea mays HOM05D007292 ORTHO05D009084 1.7e-23 114.0 193 40.9
BcaB02g08388 Brassica carinata HOM05D007292 ORTHO05D009084 2.0e-21 107.1 83 66.3
SGA_v2.0_scaffold378G50330 Striga asiatica HOM05D007292 ORTHO05D009084 1.7e-20 104.0 185 41.6
CDE04G1468 Ceratophyllum demersum HOM05D000652 ORTHO05D009084 6.6e-12 75.5 132 38.6
SEGI_20884 Sequoiadendron giganteum HOM05D007292 ORTHO05D009084 6.6e-12 75.5 135 42.2
Lj8C64T12 Lonicera japonica HOM05D007292 ORTHO05D009084 2.0e-08 63.9 173 38.2
AagrBONN_evm.TU.Sc2ySwM_344.666 Anthoceros agrestis HOM05D007292 ORTHO05D009084 1.1e-06 58.2 118 38.1
Pp3c10_22900 Physcomitrium patens HOM05D033432 ORTHO05D009084 9.2e-06 55.1 203 31.5


User provided reference genes

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