Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.905 Acer truncatum HOM05D003129 ORTHO05D016405 3.3e-130 468.4 239 100.0
Atru.chr12.904 Acer truncatum HOM05D003129 ORTHO05D016405 8.9e-51 204.5 126 84.1
Atru.chr10.1742 Acer truncatum HOM05D003129 ORTHO05D004326 2.7e-47 193.0 267 47.6
Ciclev10014801m.g Citrus clementina HOM05D003129 ORTHO05D004326 4.3e-45 185.7 267 45.3
CANSAT35G1487 Cannabis sativa HOM05D003129 ORTHO05D004326 6.2e-44 181.8 267 46.4
TWI38G0456 Tripterygium wilfordii HOM05D003129 ORTHO05D004326 8.1e-44 181.4 267 45.3
Thecc.06G176900 Theobroma cacao HOM05D003129 ORTHO05D004326 1.4e-43 180.6 267 45.3
Potri.011G062500 Populus trichocarpa HOM05D003129 ORTHO05D004326 4.0e-43 179.1 270 44.8
Potri.004G052300 Populus trichocarpa HOM05D003129 ORTHO05D004326 9.0e-43 177.9 286 43.7
Gohir.A10G029400 Gossypium hirsutum HOM05D003129 ORTHO05D004326 2.0e-42 176.8 267 44.2
Gohir.D10G029900 Gossypium hirsutum HOM05D003129 ORTHO05D004326 2.0e-42 176.8 267 44.2
Gorai.011G031800 Gossypium raimondii HOM05D003129 ORTHO05D004326 2.0e-42 176.8 267 44.2
Duzib192G0848 Durio zibethinus HOM05D003129 ORTHO05D004326 2.6e-42 176.4 269 43.9
Manes.17G052000 Manihot esculenta HOM05D003129 ORTHO05D004326 2.6e-42 176.4 267 45.7
TWI63G0550 Tripterygium wilfordii HOM05D003129 ORTHO05D004326 2.6e-42 176.4 267 44.2
Gorai.010G242700 Gossypium raimondii HOM05D003129 ORTHO05D004326 3.4e-42 176.0 283 44.2
Nn1g06337 Nelumbo nucifera HOM05D003129 ORTHO05D004326 5.8e-42 175.3 267 43.8
CiPaw.10G055300 Carya illinoinensis HOM05D003129 ORTHO05D004326 9.9e-42 174.5 267 43.8
Gohir.D06G208800 Gossypium hirsutum HOM05D003129 ORTHO05D004326 9.9e-42 174.5 283 43.8
COL.COLO4_31382 Corchorus olitorius HOM05D003129 ORTHO05D004326 1.7e-41 173.7 269 44.6
CiPaw.09G066600 Carya illinoinensis HOM05D003129 ORTHO05D004326 2.9e-41 172.9 267 43.4
TWI38G1536 Tripterygium wilfordii HOM05D003129 ORTHO05D004326 6.4e-41 171.8 267 44.2
Cpa.g.sc7.28 Carica papaya HOM05D003129 ORTHO05D004326 1.1e-40 171.0 267 43.8
Duzib235G0248 Durio zibethinus HOM05D003129 ORTHO05D004326 1.4e-40 170.6 271 43.2
TAR624G0766 Trochodendron aralioides HOM05D003129 ORTHO05D004326 1.4e-40 170.6 267 41.9
Nn1g04301 Nelumbo nucifera HOM05D003129 ORTHO05D004326 2.4e-40 169.9 267 42.7
Sp4g16390 Schrenkiella parvula HOM05D003129 ORTHO05D004326 3.2e-40 169.5 273 42.5
Eucgr.D00571 Eucalyptus grandis HOM05D003129 ORTHO05D004326 7.1e-40 168.3 269 42.4
PGR004G1912 Punica granatum HOM05D003129 ORTHO05D004326 7.1e-40 168.3 269 42.0
Lsat_1_v5_gn_4_50661 Lactuca sativa HOM05D003129 ORTHO05D004326 9.3e-40 167.9 273 42.9
HanXRQChr11g0327221 Helianthus annuus HOM05D003129 ORTHO05D004326 1.2e-39 167.5 273 41.8
Hma1.2p1_0155F.1_g068510 Hydrangea macrophylla HOM05D003129 ORTHO05D004326 1.6e-39 167.2 267 41.9
Lalb_Chr05g0218661 Lupinus albus HOM05D003129 ORTHO05D004326 1.6e-39 167.2 269 42.8
GSVIVG01021154001 Vitis vinifera HOM05D003129 ORTHO05D004326 1.6e-39 167.2 267 42.3
ClCG01G023490 Citrullus lanatus HOM05D003129 ORTHO05D004326 2.1e-39 166.8 271 41.7
Gohir.A06G200950 Gossypium hirsutum HOM05D003129 ORTHO05D004326 2.1e-39 166.8 280 43.2
Gohir.A06G201000 Gossypium hirsutum HOM05D003129 ORTHO05D004326 2.1e-39 166.8 280 43.2
Sed0018741 Sechium edule HOM05D003129 ORTHO05D004326 2.1e-39 166.8 267 41.6
MELO3C007237.2 Cucumis melo HOM05D003129 ORTHO05D004326 2.7e-39 166.4 271 42.1
CsaV3_6G050610 Cucumis sativus L. HOM05D003129 ORTHO05D004326 2.7e-39 166.4 271 42.1
Thhalv10016466m.g Eutrema salsugineum HOM05D003129 ORTHO05D004326 3.5e-39 166.0 273 41.8
Lj2A294T71 Lonicera japonica HOM05D003129 ORTHO05D004326 3.5e-39 166.0 269 42.0
Prupe.4G056400 Prunus persica HOM05D003129 ORTHO05D004326 3.5e-39 166.0 267 43.1
BcaB01g03907 Brassica carinata HOM05D003129 ORTHO05D004326 4.6e-39 165.6 267 41.9
Lalb_Chr09g0327941 Lupinus albus HOM05D003129 ORTHO05D004326 6.0e-39 165.2 284 41.2
Phvul.003G057200 Phaseolus vulgaris HOM05D003129 ORTHO05D004326 7.8e-39 164.9 273 41.0
VMungo0251G0702 Vigna mungo HOM05D003129 ORTHO05D004326 7.8e-39 164.9 273 41.0
BraA03t11158Z Brassica rapa HOM05D003129 ORTHO05D004326 1.0e-38 164.5 267 41.9
Ca_26044_v3 Cicer arietinum L. HOM05D003129 ORTHO05D004326 1.0e-38 164.5 275 40.0
MSTRG.15833 Avicennia marina HOM05D003129 ORTHO05D004326 1.3e-38 164.1 267 42.7
Dinv40631 Davidia involucrata HOM05D003129 ORTHO05D004326 1.3e-38 164.1 267 41.9
Glyma.13G172200 Glycine max HOM05D003129 ORTHO05D004326 1.3e-38 164.1 269 41.6
BcaC01g05811 Brassica carinata HOM05D003129 ORTHO05D004326 2.3e-38 163.3 267 41.6
C03p22160 Brassica napus HOM05D003129 ORTHO05D004326 2.3e-38 163.3 267 41.6
BolC3t14601H Brassica oleracea HOM05D003129 ORTHO05D004326 2.3e-38 163.3 267 41.6
MD05G1306200 Malus domestica HOM05D003129 ORTHO05D004326 2.3e-38 163.3 267 42.3
TAR627G0274 Trochodendron aralioides HOM05D003129 ORTHO05D004326 3.0e-38 162.9 267 40.8
A03p19000 Brassica napus HOM05D003129 ORTHO05D004326 3.9e-38 162.5 267 41.6
FvH4_3g08240 Fragaria vesca HOM05D003129 ORTHO05D004326 3.9e-38 162.5 267 42.3
Migut.M01074 Erythranthe guttata HOM05D003129 ORTHO05D004326 5.1e-38 162.2 267 41.6
MD10G1285200 Malus domestica HOM05D003129 ORTHO05D004326 5.1e-38 162.2 267 41.9
RcHm_v2.0_Chr5g0009911 Rosa chinensis HOM05D003129 ORTHO05D004326 5.1e-38 162.2 267 42.3
THA.LOC104814245 Tarenaya hassleriana HOM05D003129 ORTHO05D004326 6.6e-38 161.8 267 41.6
arahy.Tifrunner.gnm1.ann1.32PFVB Arachis hypogaea HOM05D003129 ORTHO05D004326 1.1e-37 161.0 267 41.6
arahy.Tifrunner.gnm1.ann1.X0U75U Arachis hypogaea HOM05D003129 ORTHO05D004326 1.1e-37 161.0 267 41.6
Glyma.07G203600 Glycine max HOM05D003129 ORTHO05D004326 1.1e-37 161.0 269 41.3
Hma1.2p1_0608F.1_g188220 Hydrangea macrophylla HOM05D003129 ORTHO05D004326 1.5e-37 160.6 267 40.1
ECA236G4078 Erigeron canadensis HOM05D003129 ORTHO05D004326 1.9e-37 160.2 273 39.2
Psat7g118240 Pisum sativum HOM05D003129 ORTHO05D004326 1.9e-37 160.2 272 40.4
HanXRQChr04g0117191 Helianthus annuus HOM05D003129 ORTHO05D004326 3.3e-37 159.5 272 39.3
FAN11G2423 Fragaria x ananassa HOM05D003129 ORTHO05D004326 4.3e-37 159.1 274 40.9
FAN16G1697 Fragaria x ananassa HOM05D003129 ORTHO05D004326 4.3e-37 159.1 274 40.9
FAN21G0899 Fragaria x ananassa HOM05D003129 ORTHO05D004326 5.6e-37 158.7 274 40.9
Lj4g0011162 Lotus japonicus HOM05D003129 ORTHO05D004326 5.6e-37 158.7 267 40.8
FAN25G1535 Fragaria x ananassa HOM05D003129 ORTHO05D004326 7.3e-37 158.3 274 40.9
Medtr4g087935 Medicago truncatula HOM05D003129 ORTHO05D004326 7.3e-37 158.3 270 40.0
GSVIVG01014247001 Vitis vinifera HOM05D003129 ORTHO05D004326 7.3e-37 158.3 267 39.0
Solyc10g008800.4 Solanum lycopersicum HOM05D003129 ORTHO05D004326 9.6e-37 157.9 267 40.1
AL4G29920 Arabidopsis lyrata HOM05D003129 ORTHO05D004326 1.3e-36 157.5 273 40.7
Carub.0004s1567 Capsella rubella HOM05D003129 ORTHO05D004326 1.3e-36 157.5 273 41.0
Sc05g0007260 Simmondsia chinensis HOM05D003129 ORTHO05D004326 1.3e-36 157.5 276 39.9
Sopen10g004580 Solanum pennellii HOM05D003129 ORTHO05D004326 1.3e-36 157.5 267 40.1
Aqoxy1G02212 Aquilegia oxysepala HOM05D003129 ORTHO05D004326 1.6e-36 157.1 267 40.8
Thhalv10007287m.g Eutrema salsugineum HOM05D003129 ORTHO05D004326 2.8e-36 156.4 267 41.2
HanXRQChr15g0481311 Helianthus annuus HOM05D003129 ORTHO05D004326 2.8e-36 156.4 273 39.2
ECA234G1267 Erigeron canadensis HOM05D003129 ORTHO05D004326 3.6e-36 156.0 273 40.7
THA.LOC104812630 Tarenaya hassleriana HOM05D003129 ORTHO05D004326 3.6e-36 156.0 268 42.2
CARHR128120 Cardamine hirsuta HOM05D003129 ORTHO05D004326 4.8e-36 155.6 273 39.9
SalBow8G3208 Salvia bowleyana HOM05D003129 ORTHO05D004326 4.8e-36 155.6 263 41.1
Carub.0001s2722 Capsella rubella HOM05D003129 ORTHO05D004326 6.2e-36 155.2 273 39.6
AT2G34040 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 8.1e-36 154.8 273 40.7
Sed0013050 Sechium edule HOM05D003129 ORTHO05D004326 8.1e-36 154.8 267 40.4
AL1G42740 Arabidopsis lyrata HOM05D003129 ORTHO05D004326 1.4e-35 154.1 273 40.3
Oeu062329.1 Olea europaea HOM05D003129 ORTHO05D004326 1.4e-35 154.1 271 40.6
Dinv14957 Davidia involucrata HOM05D003129 ORTHO05D004326 1.8e-35 153.7 267 38.6
CDE02G2353 Ceratophyllum demersum HOM05D003129 ORTHO05D004326 3.1e-35 152.9 265 40.0
Nitab4.5_0002114g0030 Nicotiana tabacum HOM05D003129 ORTHO05D004326 4.0e-35 152.5 258 40.3
CARHR028240 Cardamine hirsuta HOM05D003129 ORTHO05D004326 5.3e-35 152.1 273 39.9
Aa31LG9G13850 Aethionema arabicum HOM05D003129 ORTHO05D004326 2.0e-34 150.2 287 36.9
Lj1C835G5 Lonicera japonica HOM05D003129 ORTHO05D004326 2.6e-34 149.8 271 37.6
MSTRG.14212 Avicennia marina HOM05D003129 ORTHO05D004326 3.4e-34 149.4 267 38.6
HPP92_002946 Vanilla planifolia HOM05D003129 ORTHO05D004326 7.6e-34 148.3 262 38.9
Aqoxy4G00539 Aquilegia oxysepala HOM05D003129 ORTHO05D004326 1.3e-33 147.5 278 38.5
AT1G29030 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 2.2e-33 146.7 264 39.8
Sp1g24960 Schrenkiella parvula HOM05D003129 ORTHO05D004326 2.9e-33 146.4 273 38.1
ATR0602G129 Amborella trichopoda HOM05D003129 ORTHO05D004326 4.9e-33 145.6 267 37.5
CAN.G1119.14 Capsicum annuum HOM05D003129 ORTHO05D004326 1.1e-32 144.4 267 38.6
Solyc10g007150.4 Solanum lycopersicum HOM05D003129 ORTHO05D004326 1.4e-32 144.1 267 38.6
Rhsim04G0023800 Rhododendron simsii HOM05D003129 ORTHO05D004326 1.9e-32 143.7 267 37.1
Sopen10g003050 Solanum pennellii HOM05D003129 ORTHO05D004326 2.4e-32 143.3 267 38.6
C04p15070 Brassica napus HOM05D003129 ORTHO05D004326 3.2e-32 142.9 272 37.9
CSS0027425 Camellia sinensis var. sinensis HOM05D003129 ORTHO05D004326 3.2e-32 142.9 264 36.4
Sabra04G0033100 Salix brachista HOM05D003129 ORTHO05D004326 4.2e-32 142.5 286 39.5
Actinidia18785 Actinidia chinensis HOM05D003129 ORTHO05D004326 5.4e-32 142.1 267 36.7
SGA_v2.0_scaffold130G34337 Striga asiatica HOM05D003129 ORTHO05D004326 5.4e-32 142.1 268 38.4
SHI34908 Sapria himalayana HOM05D003129 ORTHO05D004326 7.1e-32 141.7 274 38.3
unitig_0.g2268 Utricularia gibba HOM05D003129 ORTHO05D004326 1.6e-31 140.6 271 36.9
PSO675G6268 Papaver somniferum HOM05D003129 ORTHO05D004326 2.1e-31 140.2 266 38.7
PSO541G6176 Papaver somniferum HOM05D003129 ORTHO05D004326 6.0e-31 138.7 267 38.2
Dinv17376 Davidia involucrata HOM05D003129 ORTHO05D004326 7.9e-31 138.3 147 51.0
Migut.H01970 Erythranthe guttata HOM05D003129 ORTHO05D004326 1.3e-30 137.5 267 37.1
Cc05_g11500 Coffea canephora HOM05D003129 ORTHO05D004326 1.8e-30 137.1 267 37.1
DCAR_019584 Daucus carota HOM05D003129 ORTHO05D004326 1.8e-30 137.1 267 36.0
Mapoly0091s0056 Marchantia polymorpha HOM05D003129 ORTHO05D004326 1.8e-30 137.1 259 37.1
Peaxi162Scf00027g00106 Petunia axillaris HOM05D003129 ORTHO05D004326 1.8e-30 137.1 267 37.8
CSS0050257 Camellia sinensis var. sinensis HOM05D003129 ORTHO05D004326 3.0e-30 136.3 264 36.0
Sabra11G0044300 Salix brachista HOM05D003129 ORTHO05D004326 1.9e-29 133.7 270 38.5
unitig_699.g19233 Utricularia gibba HOM05D003129 ORTHO05D004326 2.5e-29 133.3 267 36.3
Os02g0313400 Oryza sativa ssp. japonica HOM05D003129 ORTHO05D004326 9.6e-29 131.3 265 36.6
SGA_v2.0_scaffold70G23706 Striga asiatica HOM05D003129 ORTHO05D004326 1.3e-28 131.0 310 33.5
Zm00001eb235260 Zea mays HOM05D003129 ORTHO05D004326 4.8e-28 129.0 265 35.8
Peaxi162Scf00269g00314 Petunia axillaris HOM05D003129 ORTHO05D004326 8.1e-28 128.3 249 37.3
Zm00001eb203280 Zea mays HOM05D003129 ORTHO05D004326 1.8e-27 127.1 265 35.5
Aa31LG6G11500 Aethionema arabicum HOM05D003129 ORTHO05D004326 2.4e-27 126.7 149 47.7
BolC4t23083H Brassica oleracea HOM05D003129 ORTHO05D004326 3.1e-27 126.3 262 35.9
SalBow7G0623 Salvia bowleyana HOM05D003129 ORTHO05D004326 4.0e-27 125.9 307 33.2
SalBow7G1178 Salvia bowleyana HOM05D003129 ORTHO05D004326 4.0e-27 125.9 307 33.2
Pp3c3_22040 Physcomitrium patens HOM05D003129 ORTHO05D004326 1.7e-25 120.6 272 33.5
SGA_v2.0_scaffold66G22240 Striga asiatica HOM05D003129 ORTHO05D004326 1.7e-25 120.6 269 35.7
Ah.10g033800 Amaranthus hybridus HOM05D003129 ORTHO05D004326 2.9e-25 119.8 282 33.7
EL10Ac8g20476 Beta vulgaris HOM05D003129 ORTHO05D004326 1.4e-24 117.5 308 31.8
Sabra04G0033600 Salix brachista HOM05D003129 ORTHO05D004326 3.2e-24 116.3 240 38.8
SMO364G0322 Selaginella moellendorffii HOM05D003129 ORTHO05D004326 9.3e-24 114.8 147 42.2
vmacro15954 Vaccinium macrocarpon HOM05D003129 ORTHO05D004326 2.1e-23 113.6 184 38.0
AagrBONN_evm.TU.Sc2ySwM_228.5751 Anthoceros agrestis HOM05D003129 ORTHO05D004326 2.7e-23 113.2 257 33.5
Rhsim02G0138500 Rhododendron simsii HOM05D003129 ORTHO05D004326 4.6e-23 112.5 191 37.7
TPR.G16267 Trifolium pratense HOM05D003129 ORTHO05D004326 4.6e-23 112.5 216 37.5
Hund21191 Selenicereus undatus HOM05D003129 ORTHO05D004326 3.0e-22 109.8 270 35.6
Oeu043093.1 Olea europaea HOM05D003129 ORTHO05D004326 6.7e-22 108.6 236 35.6
unitig_52.g17399 Utricularia gibba HOM05D003129 ORTHO05D004326 1.1e-21 107.8 277 31.8
vmacro09507 Vaccinium macrocarpon HOM05D003129 ORTHO05D004326 1.9e-21 107.1 202 36.6
CBR_g34638 Chara braunii HOM05D003129 ORTHO05D004326 3.7e-20 102.8 257 29.6
Cc00_g29620 Coffea canephora HOM05D003129 ORTHO05D026744 3.7e-20 102.8 118 49.2
MBI07_g06431_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D000022 4.8e-20 102.4 293 31.1
MBI06_g25719_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D004326 8.2e-20 101.7 245 33.9
BcaC05g26915 Brassica carinata HOM05D003129 ORTHO05D016405 1.2e-18 97.8 266 31.6
AUR62031128 Chenopodium quinoa HOM05D003129 ORTHO05D004326 4.5e-18 95.9 264 32.6
AUR62014921 Chenopodium quinoa HOM05D003129 ORTHO05D004326 7.6e-18 95.1 264 32.6
DCAR_006587 Daucus carota HOM05D003129 ORTHO05D004326 7.6e-18 95.1 264 31.8
Cfa000558 Carpinus fangiana HOM05D003129 ORTHO05D004326 1.3e-17 94.4 188 38.8
AT1G23935 Arabidopsis thaliana HOM05D000929 ORTHO05D038725 9.3e-16 88.2 158 35.4
RcHm_v2.0_Chr1g0362691 Rosa chinensis HOM05D003129 ORTHO05D004326 4.6e-15 85.9 114 44.7
CAN.G361.6 Capsicum annuum HOM05D003129 ORTHO05D004326 6.0e-15 85.5 245 31.0
RcHm_v2.0_Chr7g0217661 Rosa chinensis HOM05D003129 ORTHO05D004326 2.3e-14 83.6 150 38.0
Actinidia35228 Actinidia chinensis HOM05D003129 ORTHO05D004326 9.7e-13 78.2 243 30.0
Carub.0003s1933 Capsella rubella HOM05D003129 ORTHO05D014420 1.1e-11 74.7 118 39.8
C05p27700 Brassica napus HOM05D003129 ORTHO05D016405 3.1e-11 73.2 104 42.3
BolC5t31490H Brassica oleracea HOM05D003129 ORTHO05D016405 3.1e-11 73.2 104 42.3
Cc02_g14340 Coffea canephora HOM05D003129 ORTHO05D016405 3.1e-11 73.2 73 50.7
TPR.G40554 Trifolium pratense HOM05D003129 ORTHO05D004326 1.5e-10 70.9 82 47.6
Nitab4.5_0001208g0080 Nicotiana tabacum HOM05D003129 ORTHO05D004326 4.5e-10 69.3 310 24.8
Cc02_g14350 Coffea canephora HOM05D003129 ORTHO05D004326 1.4e-08 64.3 147 35.4
Atru.chr12.1067 Acer truncatum HOM05D003129 ORTHO05D052457 7.2e-08 62.0 38 76.3
A05p11620 Brassica napus HOM05D003129 ORTHO05D004326 7.2e-08 62.0 170 32.9
BraA05t20109Z Brassica rapa HOM05D003129 ORTHO05D004326 7.2e-08 62.0 170 32.9


User provided reference genes

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