Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 2050.4 1067 100.0
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1677.5 1048 82.3
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1664.8 1038 82.3
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1663.3 1058 81.8
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1658.7 1047 82.1
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1656.0 1045 82.8
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1654.4 1043 82.5
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1650.6 1040 81.5
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1641.3 1051 80.7
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1638.2 1039 81.7
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1637.1 1040 80.8
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1635.2 1048 80.6
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1631.3 1052 80.6
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1628.2 1047 80.2
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1627.8 1050 80.6
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1625.9 1048 80.9
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1618.2 1023 81.5
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1615.1 1040 80.2
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1610.9 1044 80.5
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1603.6 1040 79.6
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1601.6 1044 79.8
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1596.6 1054 78.5
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1596.3 1047 78.7
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1592.0 1045 79.3
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1590.1 1045 79.3
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1588.2 1040 78.7
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1587.4 1046 79.3
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1583.9 1051 78.3
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1582.0 1032 79.7
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1577.4 1046 77.1
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1572.0 1057 78.1
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1568.9 1045 78.6
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1565.8 1051 78.2
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1559.3 1041 78.4
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1558.9 1040 78.6
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1551.2 1051 77.5
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1546.9 1046 77.0
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1542.3 1046 75.8
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1541.2 1048 75.8
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1540.4 1040 77.9
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1540.0 1045 77.4
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1538.9 1051 77.2
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1538.5 1037 78.3
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1537.7 1046 76.8
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1532.7 1041 77.8
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1528.8 1051 75.7
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1526.1 1041 76.6
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1524.2 1041 77.3
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1500.0 1060 74.8
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1500.0 1047 74.4
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1497.6 1134 72.1
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1494.9 1061 74.3
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1493.8 1049 74.0
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1493.0 1091 72.1
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1476.1 1041 74.0
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1464.9 1041 73.3
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1464.1 1073 74.1
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1462.2 1135 70.4
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1460.3 1041 73.3
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1460.3 1041 73.3
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1459.1 1052 73.1
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1456.0 996 76.6
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1454.1 1057 72.5
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1453.3 1057 72.4
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1452.6 1042 73.0
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1447.2 1041 72.8
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1435.2 1041 72.0
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1431.4 1046 71.8
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1429.8 954 78.3
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1427.9 1042 71.7
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1424.5 1076 70.1
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1423.3 1076 70.1
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1417.5 1061 70.5
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1412.9 1148 68.6
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1412.5 1040 72.9
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1409.0 1029 72.2
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1409.0 1037 71.2
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1406.0 1041 71.0
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1405.6 946 76.1
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1404.0 1037 71.4
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1397.1 1061 69.8
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1394.4 1070 69.9
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1392.9 1123 69.0
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1392.1 1040 70.4
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1392.1 1040 70.2
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1390.9 1038 70.2
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1389.4 1061 69.9
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1378.6 1041 70.5
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1375.9 1064 70.1
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1370.5 1061 69.5
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1360.1 1056 69.6
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1357.8 1046 69.2
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1347.8 1078 68.2
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1314.7 1015 68.5
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1303.5 1036 67.2
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1297.0 1072 65.6
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1296.6 1033 68.6
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1288.5 1044 65.2
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1288.1 1143 64.4
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1269.6 1043 65.0
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1263.8 1045 64.7
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1242.6 876 74.4
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1241.5 999 68.0
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1213.0 1234 57.5
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 0.0e+00 1192.6 738 83.1
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 0.0e+00 1156.7 1042 62.4
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1144.0 874 70.7
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 0.0e+00 1120.9 882 67.3
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1096.3 906 66.8
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 5.2e-300 1034.6 742 74.4
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 2.9e-287 992.3 1051 53.2
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.6e-285 986.5 1069 51.7
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 5.4e-273 944.9 602 82.2
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 2.1e-261 906.4 778 64.9
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 2.4e-257 892.9 1058 49.2
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.1e-248 863.2 748 65.1
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.9e-246 856.7 1050 47.5
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 9.0e-236 821.2 1029 46.3
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 2.7e-224 783.1 564 74.3
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 7.7e-219 765.0 559 71.9
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 6.5e-210 735.3 489 77.9
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 2.1e-208 730.3 580 67.9
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 1.4e-204 717.6 565 69.9
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 8.2e-197 691.8 681 57.7
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.5e-190 671.0 512 72.3
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 2.6e-190 670.2 840 50.4
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 8.3e-189 665.2 802 48.6
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 5.2e-183 646.0 1199 36.9
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 1.6e-176 624.4 431 75.2
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 2.0e-158 564.3 402 75.6
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 4.4e-150 536.6 374 75.9
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 2.7e-139 500.7 394 66.5
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 1.3e-128 465.3 321 75.7
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 9.0e-127 459.1 346 72.3
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 7.1e-116 422.9 330 70.0
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 1.3e-114 418.7 270 81.9
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 4.3e-113 413.7 291 75.6
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.5e-110 405.2 337 67.1
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 1.4e-98 365.5 255 75.3
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.3e-88 332.4 357 53.2
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 1.1e-76 292.7 178 80.9
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 6.8e-74 283.5 199 75.4
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 1.5e-68 265.8 194 73.7
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 1.9e-60 238.8 143 79.7
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 1.1e-55 223.0 139 79.9
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 1.5e-52 212.6 129 82.9
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 3.6e-51 208.0 108 93.5
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.8e-50 205.7 131 79.4
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 2.4e-47 195.3 139 67.6
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 6.4e-40 170.6 132 67.4
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.3e-37 162.9 96 82.3
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 5.1e-37 161.0 169 55.6
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 7.3e-36 157.1 85 87.1
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 2.0e-33 149.1 104 71.2
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 3.8e-32 144.8 86 79.1
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 5.4e-31 141.0 111 67.6
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 1.2e-30 139.8 177 49.7
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.1e-30 139.0 87 71.3
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-28 133.3 92 76.1
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 5.6e-28 131.0 203 35.0
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-26 126.3 79 72.2
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 8.9e-26 123.6 86 73.3
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 8.9e-26 123.6 79 70.9
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 2.2e-24 119.0 73 79.5
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 5.4e-23 114.4 87 66.7
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 4.6e-22 111.3 81 66.7
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 1.0e-21 110.2 100 63.0
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 2.7e-14 85.5 49 85.7
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 3.5e-14 85.1 71 64.8
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 1.8e-13 82.8 82 57.3
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 1.8e-13 82.8 82 57.3
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 8.7e-13 80.5 58 67.2
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 2.1e-11 75.9 54 70.4
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 2.1e-11 75.9 54 70.4
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 3.6e-11 75.1 48 75.0
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 4.0e-10 71.6 68 60.3
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 2.6e-09 68.9 52 71.2


User provided reference genes

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