Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 1.3e-97 359.8 183 100.0
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 1.2e-63 246.9 186 69.9
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 6.4e-57 224.6 186 65.1
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 1.1e-56 223.8 178 68.0
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 1.4e-56 223.4 186 65.6
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 3.2e-56 222.2 187 64.2
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 4.1e-56 221.9 184 65.2
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 3.9e-54 215.3 188 60.6
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 1.5e-53 213.4 193 60.1
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 4.3e-53 211.8 180 61.7
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 9.5e-53 210.7 195 61.0
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 1.6e-52 209.9 182 62.1
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 2.8e-52 209.1 198 59.1
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 4.7e-52 208.4 154 70.1
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 6.2e-52 208.0 184 60.3
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 6.2e-52 208.0 196 60.7
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 1.5e-50 203.4 188 58.0
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 2.6e-50 202.6 194 57.7
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 3.4e-50 202.2 182 59.3
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 2.2e-49 199.5 180 56.7
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 4.1e-48 195.3 168 60.7
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 5.4e-48 194.9 195 56.4
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 7.1e-48 194.5 173 57.8
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 2.1e-47 193.0 164 62.8
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 7.8e-47 191.0 183 56.8
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 1.7e-46 189.9 186 55.4
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 2.3e-46 189.5 176 57.4
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 2.3e-46 189.5 179 58.1
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 3.0e-46 189.1 175 58.9
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 3.0e-46 189.1 180 56.7
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 3.9e-46 188.7 181 54.7
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 3.9e-46 188.7 160 61.9
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 1.5e-45 186.8 178 57.9
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 4.3e-45 185.3 181 53.6
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 5.6e-45 184.9 182 55.5
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 7.3e-45 184.5 181 55.2
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 2.1e-44 183.0 180 58.3
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 2.1e-44 183.0 181 54.1
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 2.1e-44 183.0 155 60.0
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 2.1e-44 183.0 179 56.4
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 1.1e-43 180.6 184 53.3
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 1.8e-43 179.9 182 53.3
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 2.4e-43 179.5 155 61.3
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 3.1e-43 179.1 137 63.5
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 5.2e-43 178.3 182 52.7
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 5.2e-43 178.3 152 59.9
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 9.0e-43 177.6 158 55.7
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 9.0e-43 177.6 162 58.6
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 1.2e-42 177.2 152 59.2
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 1.5e-42 176.8 180 53.9
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 3.4e-42 175.6 103 81.6
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 2.2e-41 172.9 120 69.2
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 2.9e-41 172.6 185 53.5
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 2.9e-41 172.6 166 54.8
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 3.8e-41 172.2 169 54.4
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 4.9e-41 171.8 187 49.2
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 4.9e-41 171.8 158 55.1
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 6.4e-41 171.4 181 53.0
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.1e-40 170.6 142 60.6
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 3.2e-40 169.1 187 50.3
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 5.4e-40 168.3 154 58.4
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 7.1e-40 167.9 191 52.9
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 1.6e-39 166.8 128 64.8
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 1.6e-39 166.8 193 51.3
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 2.1e-39 166.4 184 51.6
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 2.1e-39 166.4 184 51.6
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 2.1e-39 166.4 184 51.6
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 2.1e-39 166.4 170 54.1
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 2.7e-39 166.0 200 49.5
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 3.5e-39 165.6 176 51.1
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 6.0e-39 164.9 99 78.8
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 1.3e-38 163.7 162 52.5
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 5.1e-38 161.8 134 59.0
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 5.1e-38 161.8 179 49.2
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 6.6e-38 161.4 186 49.5
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 1.5e-37 160.2 153 52.3
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 1.5e-37 160.2 184 48.9
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 1.9e-37 159.8 165 53.3
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 2.5e-37 159.5 149 55.7
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 2.5e-37 159.5 179 51.4
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 4.3e-37 158.7 184 47.3
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 4.3e-37 158.7 185 47.6
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 5.6e-37 158.3 179 49.7
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 5.6e-37 158.3 185 48.1
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 5.6e-37 158.3 183 47.5
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 5.6e-37 158.3 183 47.0
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 9.6e-37 157.5 149 55.0
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 1.6e-36 156.8 106 71.7
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 1.6e-36 156.8 179 49.2
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 2.1e-36 156.4 185 47.0
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 2.1e-36 156.4 198 46.5
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 2.8e-36 156.0 105 66.7
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 3.6e-36 155.6 93 73.1
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 4.8e-36 155.2 182 47.8
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 6.2e-36 154.8 179 49.2
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 8.1e-36 154.5 111 68.5
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 1.4e-35 153.7 195 48.7
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 1.4e-35 153.7 198 45.5
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 2.4e-35 152.9 189 46.0
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 2.4e-35 152.9 189 46.0
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 2.4e-35 152.9 132 59.8
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 4.0e-35 152.1 198 45.5
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 5.3e-35 151.8 179 47.5
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 2.6e-34 149.4 98 70.4
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.6e-34 149.4 98 70.4
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.6e-34 149.4 98 70.4
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 3.4e-34 149.1 147 52.4
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 5.8e-34 148.3 150 56.0
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 7.6e-34 147.9 98 69.4
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.3e-33 147.1 91 73.6
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.7e-33 146.7 98 69.4
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 1.4e-32 143.7 80 82.5
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 5.1e-30 135.2 126 51.6
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 3.7e-28 129.0 170 44.1
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 3.1e-27 125.9 166 41.6
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 6.9e-27 124.8 75 72.0
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 1.2e-26 124.0 117 48.7
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 1.1e-24 117.5 88 60.2
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 4.2e-24 115.5 146 45.9
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 7.9e-23 111.3 103 56.3
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 5.1e-22 108.6 72 68.1
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 8.7e-22 107.8 168 39.9
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.1e-20 103.2 93 55.9
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 2.8e-20 102.8 121 43.0
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 4.5e-18 95.5 114 49.1
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 5.8e-18 95.1 165 37.0
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.6e-15 87.0 108 48.1
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 1.1e-13 80.9 101 45.5
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 3.3e-13 79.3 78 51.3
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 9.7e-13 77.8 68 57.4
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 1.6e-12 77.0 72 47.2
Rhsim05G0120600 Rhododendron simsii HOM05D005893 ORTHO05D007295 6.3e-12 75.1 155 34.8
Cfa025074 Carpinus fangiana HOM05D005893 ORTHO05D007295 3.4e-10 69.3 87 39.1
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 1.3e-09 67.4 79 39.2
MBI05_g31458_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 5.0e-09 65.5 120 40.0
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 5.0e-09 65.5 62 45.2
BolC6t37424H Brassica oleracea HOM05D005893 ORTHO05D007295 6.7e-06 55.1 123 34.1


User provided reference genes

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