Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 2.3e-57 225.3 113 100.0
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 5.2e-57 224.2 112 98.2
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 1.9e-51 205.7 112 90.2
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 1.6e-42 176.0 111 73.9
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.3e-41 172.2 112 73.2
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.3e-41 172.2 112 73.2
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 6.8e-41 170.6 112 69.6
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 7.5e-40 167.2 112 67.9
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 7.5e-40 167.2 112 70.5
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 7.5e-40 167.2 112 70.5
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.3e-39 166.4 112 72.3
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 1.7e-39 166.0 112 69.6
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 2.2e-39 165.6 111 66.7
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 2.8e-39 165.2 112 71.4
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 2.8e-39 165.2 112 68.8
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 3.7e-39 164.9 112 69.6
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 4.8e-39 164.5 112 70.5
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 6.3e-39 164.1 112 67.0
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 6.3e-39 164.1 112 68.8
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 8.3e-39 163.7 112 68.8
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 1.1e-38 163.3 112 69.6
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 1.4e-38 162.9 112 68.8
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 1.4e-38 162.9 112 69.6
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 1.8e-38 162.5 112 67.9
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 2.4e-38 162.2 112 68.8
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 2.4e-38 162.2 112 69.6
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 4.1e-38 161.4 111 67.6
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 5.4e-38 161.0 112 64.3
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 5.4e-38 161.0 112 67.0
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 7.0e-38 160.6 112 67.9
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 7.0e-38 160.6 112 70.5
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 9.1e-38 160.2 112 68.8
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 9.1e-38 160.2 112 67.9
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 1.2e-37 159.8 112 67.9
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.2e-37 159.8 112 68.8
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 1.2e-37 159.8 112 67.9
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 1.6e-37 159.5 112 67.9
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.6e-37 159.5 112 67.9
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 1.6e-37 159.5 112 67.9
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 1.6e-37 159.5 112 69.6
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 1.6e-37 159.5 112 69.6
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 2.0e-37 159.1 112 67.0
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 2.0e-37 159.1 112 67.0
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.0e-37 159.1 111 66.7
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 2.7e-37 158.7 112 64.3
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 2.7e-37 158.7 112 68.8
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 2.7e-37 158.7 112 67.0
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 2.7e-37 158.7 112 67.0
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 2.7e-37 158.7 112 65.2
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 2.7e-37 158.7 112 66.1
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 3.5e-37 158.3 112 67.9
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 3.5e-37 158.3 112 67.9
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 3.5e-37 158.3 112 67.9
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 3.5e-37 158.3 112 67.0
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 4.5e-37 157.9 112 68.8
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 4.5e-37 157.9 112 68.8
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 4.5e-37 157.9 113 66.4
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 4.5e-37 157.9 111 68.5
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 4.5e-37 157.9 112 67.0
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 5.9e-37 157.5 112 65.2
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 5.9e-37 157.5 113 68.1
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 7.7e-37 157.1 112 67.9
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 7.7e-37 157.1 112 65.2
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 1.3e-36 156.4 112 65.2
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 1.3e-36 156.4 112 67.0
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 1.3e-36 156.4 112 65.2
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 1.7e-36 156.0 112 65.2
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 1.7e-36 156.0 112 67.9
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 2.2e-36 155.6 112 67.9
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 2.2e-36 155.6 112 67.0
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 2.2e-36 155.6 112 64.3
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 2.9e-36 155.2 112 68.8
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 2.9e-36 155.2 112 66.1
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 2.9e-36 155.2 112 65.2
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 2.9e-36 155.2 112 67.9
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 5.0e-36 154.5 112 65.2
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 5.0e-36 154.5 111 65.8
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 6.5e-36 154.1 111 63.1
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 6.5e-36 154.1 111 65.8
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 8.5e-36 153.7 111 66.7
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 8.5e-36 153.7 112 64.3
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 8.5e-36 153.7 111 66.7
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 1.1e-35 153.3 112 65.2
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 1.1e-35 153.3 112 64.3
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 1.5e-35 152.9 112 62.5
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.5e-35 152.9 112 62.5
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 3.2e-35 151.8 112 62.5
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 3.2e-35 151.8 112 63.4
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 4.2e-35 151.4 112 60.7
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 4.2e-35 151.4 112 64.3
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 4.2e-35 151.4 112 62.5
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 4.2e-35 151.4 112 65.2
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 4.2e-35 151.4 111 60.4
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 5.5e-35 151.0 112 60.7
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 5.5e-35 151.0 112 60.7
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 7.2e-35 150.6 112 62.5
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 7.2e-35 150.6 112 62.5
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 9.5e-35 150.2 112 60.7
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 1.2e-34 149.8 112 66.1
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 8.0e-34 147.1 112 59.8
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 8.0e-34 147.1 112 58.9
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 2.3e-33 145.6 112 58.9
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 2.3e-33 145.6 112 59.8
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 2.3e-33 145.6 112 59.8
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 4.0e-33 144.8 113 61.9
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 4.4e-32 141.4 112 57.1
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 5.7e-32 141.0 112 60.7
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 7.5e-32 140.6 111 61.3
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 9.8e-32 140.2 112 57.1
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 2.2e-31 139.0 112 56.2
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.2e-31 139.0 106 60.4
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 2.8e-31 138.7 112 55.4
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 4.9e-31 137.9 112 58.0
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 1.8e-30 136.0 112 56.2
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 3.5e-29 131.7 107 60.7
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 4.5e-29 131.3 111 54.1
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 2.9e-28 128.6 111 55.9
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 5.0e-28 127.9 110 56.4
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 8.0e-26 120.6 110 51.8
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 5.2e-25 117.9 112 50.9
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 2.0e-24 115.9 91 59.3
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 2.7e-21 105.5 76 71.1
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 2.5e-19 99.0 90 54.4
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 2.8e-18 95.5 75 62.7
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 1.4e-17 93.2 77 63.6
Zm00001eb084840 Zea mays HOM05D004238 ORTHO05D004934 1.4e-17 93.2 73 60.3
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 2.3e-17 92.4 103 45.6
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 9.2e-14 80.5 69 60.9
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 6.0e-13 77.8 110 38.2
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 3.0e-12 75.5 49 63.3
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 6.8e-09 64.3 53 47.2
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.9e-06 56.2 43 67.4


User provided reference genes

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