Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 1.1e-181 639.8 321 100.0
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 3.0e-142 508.8 319 75.9
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 6.2e-140 501.1 322 76.4
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 1.1e-139 500.4 319 75.2
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 9.0e-139 497.3 320 75.6
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 7.6e-138 494.2 318 73.9
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 2.9e-137 492.3 320 75.9
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.1e-136 490.3 318 72.6
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 3.2e-136 488.8 318 73.6
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 5.4e-136 488.0 318 74.5
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 1.2e-135 486.9 318 73.9
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.6e-135 486.5 319 72.4
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 2.1e-135 486.1 323 71.2
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 4.6e-135 485.0 318 73.0
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 2.3e-134 482.6 329 72.6
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.3e-134 482.6 318 71.7
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 1.5e-133 479.9 319 72.4
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.5e-133 479.9 319 72.1
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 2.5e-133 479.2 321 71.3
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 3.3e-133 478.8 320 72.5
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 1.6e-132 476.5 321 72.0
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.6e-132 476.5 321 72.0
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 3.6e-132 475.3 320 72.8
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 1.4e-131 473.4 319 71.5
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 1.4e-131 473.4 317 72.2
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.4e-131 473.4 321 71.3
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 1.4e-131 473.4 318 72.0
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 1.8e-131 473.0 318 70.4
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 1.8e-131 473.0 316 72.5
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 4.0e-131 471.9 320 71.9
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 1.2e-130 470.3 318 72.0
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 1.5e-130 469.9 320 71.6
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 4.5e-130 468.4 317 71.3
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 7.6e-130 467.6 319 71.5
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 9.9e-130 467.2 317 71.3
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.3e-129 466.8 319 70.2
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 3.8e-129 465.3 323 69.7
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 6.4e-129 464.5 318 70.1
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 8.4e-129 464.2 320 70.6
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 1.1e-128 463.8 315 71.4
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 2.4e-128 462.6 322 68.6
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 3.2e-128 462.2 318 68.9
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 5.4e-128 461.5 318 70.4
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 5.4e-128 461.5 317 68.1
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 5.4e-128 461.5 322 68.3
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 9.3e-128 460.7 319 69.0
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 2.7e-127 459.1 317 68.5
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 2.7e-127 459.1 365 64.4
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 4.6e-127 458.4 318 69.2
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 4.6e-127 458.4 322 68.9
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 4.6e-127 458.4 318 68.2
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 6.0e-127 458.0 322 67.4
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 7.9e-127 457.6 317 69.4
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 1.0e-126 457.2 320 67.8
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.3e-126 456.8 322 69.9
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 1.3e-126 456.8 320 68.8
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.8e-126 456.4 323 68.4
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 3.0e-126 455.7 317 67.8
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 5.1e-126 454.9 320 67.8
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 5.1e-126 454.9 318 69.2
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 8.7e-126 454.1 320 67.2
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.1e-125 453.8 322 69.6
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 4.3e-125 451.8 318 66.4
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 1.4e-123 446.8 317 66.6
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 4.0e-123 445.3 318 67.3
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 2.9e-121 439.1 318 65.4
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 3.8e-121 438.7 316 65.8
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 8.4e-121 437.6 319 66.8
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 3.2e-120 435.6 321 66.4
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 5.5e-120 434.9 306 66.3
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 9.3e-120 434.1 323 66.3
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 9.3e-120 434.1 320 65.9
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.2e-119 433.7 318 66.7
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.2e-119 433.7 320 65.9
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 4.6e-119 431.8 324 66.7
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 1.0e-118 430.6 320 65.6
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 2.3e-118 429.5 320 65.3
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 5.1e-118 428.3 319 63.9
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 1.9e-117 426.4 320 65.3
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 2.5e-117 426.0 319 62.7
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 2.5e-117 426.0 323 65.9
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.3e-116 423.7 303 65.3
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 1.3e-116 423.7 325 64.3
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 1.6e-116 423.3 317 66.2
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 2.1e-116 422.9 323 63.5
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 4.8e-116 421.8 323 63.5
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 4.8e-116 421.8 323 63.2
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 8.2e-116 421.0 320 65.6
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 2.4e-115 419.5 322 63.0
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 2.4e-115 419.5 323 62.8
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 4.0e-115 418.7 322 62.7
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 9.0e-115 417.5 323 62.5
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 2.0e-114 416.4 323 62.2
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 2.6e-114 416.0 320 61.9
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 3.4e-114 415.6 324 63.0
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 1.3e-113 413.7 324 63.0
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 2.2e-113 412.9 323 61.9
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 3.8e-113 412.1 275 74.5
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 6.5e-113 411.4 324 62.7
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 4.2e-112 408.7 324 61.1
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 5.5e-112 408.3 325 62.5
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 9.3e-112 407.5 313 62.9
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.1e-111 406.4 285 68.1
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 7.9e-111 404.4 318 61.6
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 1.8e-110 403.3 261 76.2
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 1.3e-108 397.1 320 60.3
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.2e-106 390.6 319 60.8
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 3.4e-106 389.0 412 53.4
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.3e-105 387.1 369 54.5
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 6.5e-105 384.8 319 61.8
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 6.1e-103 378.3 323 58.8
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 6.1e-103 378.3 323 58.8
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 1.4e-102 377.1 256 71.1
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.5e-101 373.6 319 59.9
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 2.5e-101 372.9 291 62.9
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 1.9e-96 356.7 538 40.3
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 3.6e-95 352.4 319 56.7
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 1.4e-94 350.5 286 60.1
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 1.7e-89 333.6 682 33.9
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 6.5e-89 331.6 274 61.3
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 3.9e-86 322.4 263 58.6
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 2.2e-84 316.6 228 68.9
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 1.6e-82 310.5 217 68.2
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 2.5e-80 303.1 305 48.2
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 6.8e-78 295.0 254 57.9
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 5.7e-77 292.0 310 45.2
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 2.8e-76 289.7 310 45.5
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.4e-75 287.3 202 69.3
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 2.2e-73 280.0 306 46.7
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 2.0e-69 266.9 221 59.7
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 5.7e-69 265.4 175 73.7
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 1.2e-53 214.5 298 38.9
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 2.0e-45 187.2 191 46.6
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 2.9e-36 156.8 94 78.7
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 5.1e-33 146.0 96 71.9
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.4e-29 132.9 93 66.7
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 7.6e-29 132.1 96 67.7
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.3e-28 131.3 93 66.7
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.7e-28 131.0 75 78.7
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 3.0e-25 120.2 86 66.3
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 3.0e-25 120.2 119 52.9
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 1.7e-20 104.4 330 26.4
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 7.8e-18 95.5 85 56.5
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 6.6e-17 92.4 80 52.5
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 2.0e-13 80.9 69 60.9
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 6.7e-09 65.9 59 55.9
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 6.7e-09 65.9 56 58.9
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 1.5e-08 64.7 51 60.8
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 1.5e-08 64.7 51 60.8
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 1.9e-08 64.3 51 60.8
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.1e-06 58.5 41 61.0
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 4.0e-06 56.6 50 52.0


User provided reference genes

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