Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 4.5e-109 397.9 195 100.0
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 1.2e-77 293.5 195 70.8
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 2.0e-77 292.7 193 72.5
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 2.3e-76 289.3 189 72.5
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 2.9e-76 288.9 189 71.4
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 8.6e-76 287.3 189 72.0
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 1.5e-75 286.6 185 72.4
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 1.2e-74 283.5 188 71.8
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 1.6e-74 283.1 192 72.4
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 4.7e-74 281.6 187 70.6
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 8.0e-74 280.8 189 72.0
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 1.0e-73 280.4 195 68.2
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 2.3e-73 279.3 186 71.0
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 4.0e-73 278.5 180 71.7
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 4.0e-73 278.5 184 71.7
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 5.2e-73 278.1 195 67.7
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 6.8e-73 277.7 187 72.7
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 1.2e-72 276.9 186 72.0
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 1.2e-72 276.9 184 72.8
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.2e-72 276.9 195 70.8
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 1.5e-72 276.6 187 69.0
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 2.6e-72 275.8 184 70.7
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 3.4e-72 275.4 183 69.9
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 3.4e-72 275.4 183 72.1
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 3.4e-72 275.4 183 70.5
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 4.4e-72 275.0 185 69.2
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 7.5e-72 274.2 177 73.4
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 7.5e-72 274.2 183 72.1
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 9.8e-72 273.9 175 74.9
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 1.3e-71 273.5 184 71.2
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.3e-71 273.5 184 69.6
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 1.3e-71 273.5 198 68.2
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 1.7e-71 273.1 187 69.5
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 2.2e-71 272.7 184 69.6
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 4.9e-71 271.6 199 67.8
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 6.3e-71 271.2 196 72.4
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 8.3e-71 270.8 189 69.8
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 8.3e-71 270.8 196 67.9
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 1.1e-70 270.4 184 70.1
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.1e-70 270.4 184 70.1
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 1.4e-70 270.0 188 67.0
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 2.4e-70 269.2 196 67.3
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 4.1e-70 268.5 183 70.5
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 4.1e-70 268.5 182 69.8
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 4.1e-70 268.5 183 68.9
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 7.0e-70 267.7 184 69.6
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 7.0e-70 267.7 196 66.8
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 1.2e-69 266.9 184 67.4
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 2.0e-69 266.2 187 69.5
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 4.5e-69 265.0 183 70.5
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 7.8e-69 264.2 183 69.4
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 1.0e-68 263.8 183 69.9
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.3e-68 263.5 184 68.5
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 2.3e-68 262.7 195 67.7
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 5.0e-68 261.5 187 69.5
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 2.5e-67 259.2 186 68.3
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 7.3e-67 257.7 191 66.0
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 9.5e-67 257.3 198 64.6
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 2.1e-66 256.1 184 66.8
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 1.4e-65 253.4 176 68.2
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 1.4e-65 253.4 196 65.3
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 1.8e-65 253.1 180 70.0
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 6.8e-65 251.1 203 62.1
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 8.9e-65 250.8 188 64.9
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 2.0e-64 249.6 194 63.9
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 2.0e-64 249.6 194 63.9
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 5.7e-64 248.1 193 62.2
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 7.5e-64 247.7 180 67.2
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 7.5e-64 247.7 196 64.8
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 9.8e-64 247.3 193 64.2
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 9.8e-64 247.3 197 63.5
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 9.8e-64 247.3 189 63.0
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 2.2e-63 246.1 183 64.5
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 6.4e-63 244.6 164 68.9
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 1.1e-62 243.8 193 63.2
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 1.8e-62 243.0 176 66.5
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 1.8e-62 243.0 193 60.1
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 1.8e-62 243.0 193 60.1
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 2.4e-62 242.7 176 65.9
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 3.2e-62 242.3 201 62.2
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 7.0e-62 241.1 175 66.3
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 9.2e-62 240.7 163 69.9
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.7e-60 236.5 188 62.8
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 1.7e-60 236.5 182 62.1
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 2.3e-60 236.1 196 58.7
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 2.3e-60 236.1 196 58.7
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 2.3e-60 236.1 177 60.5
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 6.6e-60 234.6 187 60.4
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 6.6e-60 234.6 187 60.4
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 3.3e-59 232.3 189 61.9
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 9.5e-59 230.7 166 66.3
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 2.8e-58 229.2 172 63.4
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 4.7e-58 228.4 200 56.0
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 4.7e-58 228.4 187 61.5
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 4.7e-58 228.4 187 62.0
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.4e-57 226.9 188 59.6
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 5.2e-57 224.9 196 54.6
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 1.5e-56 223.4 183 56.8
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 2.0e-56 223.0 191 55.5
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 7.5e-56 221.1 183 56.8
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 3.2e-54 215.7 151 68.2
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 2.0e-53 213.0 139 74.8
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 7.8e-53 211.1 185 54.6
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 6.6e-52 208.0 181 54.1
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 8.6e-52 207.6 163 60.1
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 1.1e-51 207.2 157 65.0
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 1.1e-51 207.2 135 74.1
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 2.5e-51 206.1 183 54.6
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 2.8e-50 202.6 185 53.0
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 4.7e-50 201.8 135 71.9
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.4e-49 200.3 170 60.6
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.5e-48 196.8 169 59.8
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 2.2e-47 193.0 189 50.8
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 1.1e-46 190.7 175 58.3
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.2e-46 189.1 170 53.5
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.4e-46 188.3 168 53.6
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 9.2e-46 187.6 170 52.4
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 2.1e-45 186.4 138 63.8
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 1.0e-44 184.1 114 73.7
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.5e-43 180.3 154 56.5
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.4e-41 173.7 165 50.3
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 2.1e-37 159.8 179 45.8
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.7e-37 159.5 138 54.3
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 6.0e-37 158.3 186 44.1
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.0e-36 157.5 112 63.4
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 1.3e-36 157.1 146 56.8
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.9e-36 155.6 127 58.3
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 8.1e-34 147.9 189 47.6
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 1.4e-33 147.1 191 41.9
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.8e-33 146.7 170 45.3
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 3.4e-32 142.5 96 67.7
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.4e-30 136.3 82 76.8
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 3.4e-24 115.9 196 35.7
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.0e-20 104.4 119 47.1
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.3e-20 104.0 88 52.3
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 4.8e-10 68.9 54 59.3
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 1.8e-09 67.0 110 35.5
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 3.4e-08 62.8 53 58.5
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.4e-08 62.8 53 54.7
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 3.8e-07 59.3 84 42.9
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 1.9e-06 57.0 44 61.4
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 4.2e-06 55.8 53 52.8


User provided reference genes

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