Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 8.7e-128 460.3 230 100.0
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 1.0e-91 340.5 230 74.8
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.2e-89 333.6 228 77.2
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 5.2e-88 328.2 225 76.9
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 2.2e-86 322.8 232 73.7
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 2.2e-86 322.8 231 74.9
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 2.8e-86 322.4 231 74.5
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 3.7e-86 322.0 232 75.4
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 6.3e-86 321.2 232 75.4
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 2.4e-85 319.3 232 75.0
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 9.1e-85 317.4 226 73.0
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 1.2e-84 317.0 232 73.7
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 1.2e-84 317.0 232 73.7
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 4.5e-84 315.1 235 73.2
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 1.0e-83 313.9 233 70.8
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 2.2e-83 312.8 229 72.1
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 3.8e-83 312.0 227 70.0
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 3.8e-83 312.0 227 70.5
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 3.8e-83 312.0 227 70.0
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.1e-82 310.5 233 70.0
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 1.2e-81 307.0 228 71.5
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 1.2e-81 307.0 228 71.5
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 2.1e-81 306.2 232 67.2
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 2.7e-81 305.8 233 68.2
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 2.7e-81 305.8 230 70.9
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 8.0e-81 304.3 232 66.8
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.0e-80 303.9 232 66.8
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 2.3e-80 302.8 233 67.4
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 5.2e-80 301.6 232 69.0
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 5.2e-80 301.6 228 68.9
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 8.8e-80 300.8 214 70.6
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.2e-79 300.4 233 67.0
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 1.5e-79 300.1 228 70.6
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 1.5e-79 300.1 228 70.6
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 1.5e-79 300.1 233 66.5
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 2.0e-79 299.7 230 68.7
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 3.3e-79 298.9 228 70.2
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 3.3e-79 298.9 228 68.4
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 5.7e-79 298.1 227 69.2
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 9.7e-79 297.4 227 70.5
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 1.7e-78 296.6 227 70.5
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 2.8e-78 295.8 227 67.8
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 2.8e-78 295.8 231 71.0
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 2.8e-78 295.8 232 66.4
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 2.8e-78 295.8 229 66.8
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 2.8e-78 295.8 229 66.8
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 2.8e-78 295.8 230 67.4
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 3.7e-78 295.4 229 66.8
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 3.7e-78 295.4 233 69.5
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 4.8e-78 295.0 227 70.5
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 1.1e-77 293.9 227 69.6
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 1.1e-77 293.9 229 70.3
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 1.4e-77 293.5 234 67.9
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 2.4e-77 292.7 234 69.7
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 3.1e-77 292.4 227 69.2
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 7.0e-77 291.2 227 69.6
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 7.0e-77 291.2 233 67.0
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 9.1e-77 290.8 230 67.4
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 1.2e-76 290.4 233 66.1
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 2.0e-76 289.7 227 67.8
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 2.7e-76 289.3 220 69.1
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 5.9e-76 288.1 238 65.5
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 7.7e-76 287.7 235 63.0
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 7.7e-76 287.7 187 72.7
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 2.2e-75 286.2 224 65.6
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 2.9e-75 285.8 234 64.5
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 3.8e-75 285.4 218 69.3
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 3.8e-75 285.4 209 67.9
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 5.0e-75 285.0 232 66.8
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 6.5e-75 284.6 233 64.8
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 1.9e-74 283.1 233 66.1
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 2.5e-74 282.7 199 68.8
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 3.2e-74 282.3 228 65.4
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 5.5e-74 281.6 237 63.3
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 1.6e-73 280.0 231 63.6
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 6.1e-73 278.1 232 65.1
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 6.1e-73 278.1 233 66.5
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 1.4e-72 276.9 181 74.6
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 4.0e-72 275.4 215 67.0
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 5.2e-72 275.0 233 63.1
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 8.8e-72 274.2 235 63.8
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 8.8e-72 274.2 236 62.7
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 1.2e-71 273.9 228 64.9
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 2.6e-71 272.7 209 67.5
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 2.6e-71 272.7 181 73.5
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 9.8e-71 270.8 229 63.3
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 9.8e-71 270.8 233 61.8
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 8.3e-70 267.7 203 67.5
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 2.4e-69 266.2 237 61.2
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 3.1e-69 265.8 206 64.1
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 4.5e-68 261.9 222 60.4
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 7.7e-68 261.2 188 67.6
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 1.7e-67 260.0 228 59.6
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 1.7e-67 260.0 215 63.3
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 2.3e-67 259.6 228 59.6
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 6.6e-67 258.1 185 67.0
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 8.6e-67 257.7 201 63.2
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 3.3e-66 255.8 229 59.4
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 2.3e-64 249.6 210 61.4
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 6.8e-64 248.1 182 66.5
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.2e-63 247.3 180 66.1
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 6.3e-62 241.5 179 65.4
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 2.4e-61 239.6 180 65.6
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 3.5e-60 235.7 224 59.4
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 8.0e-57 224.6 193 56.5
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 3.1e-56 222.6 203 62.1
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 1.7e-54 216.9 131 74.8
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 3.2e-53 212.6 145 69.0
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 2.8e-49 199.5 147 64.6
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 3.6e-49 199.1 146 65.1
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 6.2e-49 198.4 146 64.4
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 1.4e-48 197.2 147 63.9
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.8e-48 196.8 146 63.7
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 4.0e-48 195.7 147 63.3
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.2e-47 194.1 145 63.4
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 1.2e-47 194.1 146 63.0
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 1.5e-47 193.7 147 63.3
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 2.0e-47 193.4 147 62.6
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 2.0e-47 193.4 147 62.6
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 2.0e-47 193.4 147 62.6
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 2.6e-47 193.0 146 63.0
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 5.8e-47 191.8 147 61.9
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 5.8e-47 191.8 147 61.9
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 2.2e-46 189.9 231 51.5
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 8.6e-43 177.9 180 50.0
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 1.1e-42 177.6 146 56.2
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 2.0e-39 166.8 104 77.9
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 2.2e-38 163.3 102 78.4
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 3.7e-38 162.5 171 48.0
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 3.5e-36 156.0 155 49.7
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 4.7e-33 145.6 132 59.8
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 6.8e-32 141.7 105 62.9
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 6.4e-30 135.2 161 41.6
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 8.4e-30 134.8 194 40.2
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 1.4e-29 134.0 226 42.9
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.6e-28 130.6 132 61.4
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 6.0e-28 128.6 146 45.2
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 3.0e-27 126.3 88 67.0
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 5.1e-27 125.6 196 38.3
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.4e-21 107.5 210 37.6
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 2.4e-21 106.7 198 33.8
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 4.6e-20 102.4 206 31.1
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 1.0e-19 101.3 201 31.8
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 1.0e-19 101.3 100 53.0
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 2.3e-19 100.1 226 35.8
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 3.0e-19 99.8 71 62.0
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 2.8e-17 93.2 59 76.3
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 1.3e-14 84.3 101 56.4
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.8e-14 82.8 104 41.3
Hma1.2p1_1893F.1_g306730 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 5.3e-08 62.4 59 49.2
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 5.3e-08 62.4 48 62.5
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 9.0e-08 61.6 84 38.1
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 9.0e-08 61.6 84 38.1


User provided reference genes

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