Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 0.0e+00 2406.3 1249 100.0
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 0.0e+00 1192.6 1268 55.3
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 9.4e-285 984.2 1298 47.1
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 1.6e-284 983.4 1285 48.4
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 1.5e-282 976.9 1253 47.7
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 2.2e-278 963.0 1275 48.1
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 8.0e-276 954.5 1321 46.1
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 4.5e-271 938.7 1306 45.3
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 7.7e-271 937.9 1290 47.9
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 2.2e-265 919.8 1235 46.1
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 5.4e-264 915.2 1300 45.9
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 4.2e-261 905.6 1310 43.9
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.8e-259 900.2 1297 44.1
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 1.8e-256 890.2 1288 45.9
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 7.8e-255 884.8 1288 45.6
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 2.3e-243 846.7 1281 44.9
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 4.6e-239 832.4 1298 42.4
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 2.8e-236 823.2 1238 45.2
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 1.5e-229 800.8 1292 45.9
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 1.9e-229 800.4 1241 44.3
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 7.3e-229 798.5 1261 43.4
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 1.3e-225 787.7 1297 44.5
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 6.9e-219 765.4 1297 43.7
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 9.9e-218 761.5 1308 43.1
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 3.0e-214 750.0 1262 43.1
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 3.3e-213 746.5 1297 41.9
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 7.6e-210 735.3 1284 41.8
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 1.6e-207 727.6 1264 42.1
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 1.5e-205 721.1 1303 41.6
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 6.7e-198 695.7 1276 40.3
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 3.3e-197 693.3 1301 40.6
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 9.6e-197 691.8 1301 40.7
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 3.5e-191 673.3 1307 40.9
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 1.5e-189 667.9 1300 39.7
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 6.3e-188 662.5 1271 39.7
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.8e-187 661.0 1284 38.9
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 2.4e-187 660.6 1288 39.0
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 2.0e-186 657.5 1284 38.9
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 2.6e-186 657.1 1307 40.7
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 7.7e-186 655.6 1320 38.5
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 3.8e-185 653.3 1294 41.2
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 8.5e-185 652.1 1261 41.6
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 4.2e-184 649.8 1278 39.0
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 6.3e-180 636.0 1304 38.5
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 4.2e-176 623.2 1278 38.1
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 5.5e-176 622.9 1127 41.2
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 2.0e-165 587.8 1240 38.7
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 2.0e-162 577.8 1260 37.5
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 1.3e-156 558.5 1278 36.7
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 3.1e-155 553.9 1167 38.0
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 1.6e-143 515.0 1309 34.8
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 8.0e-143 512.7 1261 34.3
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 1.2e-138 498.8 1284 32.7
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 1.6e-138 498.4 1366 33.0
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 6.6e-137 493.0 1325 34.1
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 3.1e-134 484.2 1264 34.0
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.2e-133 482.3 1268 34.4
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.4e-131 475.3 1264 33.8
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 2.3e-129 468.0 1289 33.2
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 5.6e-128 463.4 1284 32.5
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 4.0e-126 457.2 1256 32.4
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 1.6e-122 445.3 750 43.2
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 4.0e-118 430.6 783 41.5
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 1.1e-112 412.5 1280 32.3
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 4.0e-110 404.1 1278 31.5
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.7e-108 398.7 1288 31.4
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 4.9e-108 397.1 560 46.4
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 3.1e-102 377.9 1276 32.1
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.2e-93 349.4 1145 31.6
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 2.6e-93 348.2 1231 29.8
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.9e-91 342.0 939 32.6
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 7.9e-90 336.7 823 35.7
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 2.1e-87 328.6 1265 30.1
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 4.8e-87 327.4 291 56.4
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 8.4e-84 316.6 802 34.0
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 1.9e-83 315.5 1238 26.8
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 6.0e-82 310.5 1224 31.4
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 1.1e-80 306.2 1305 29.4
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 1.8e-78 298.9 665 34.7
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 6.1e-74 283.9 670 34.9
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 2.2e-68 265.4 695 33.7
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.1e-67 263.1 795 31.2
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 1.6e-66 259.2 1051 29.6
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 2.1e-66 258.8 706 33.0
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 2.8e-63 248.4 1240 27.0
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 4.8e-63 247.7 1042 30.3
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 4.5e-61 241.1 948 29.7
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 1.1e-59 236.5 1258 27.3
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 7.7e-53 213.8 751 28.9
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 3.8e-52 211.5 1259 26.7
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 4.2e-51 208.0 1268 27.5
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 2.7e-50 205.3 1259 26.8
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 2.3e-49 202.2 389 36.0
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 2.9e-44 185.3 1260 25.6
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.2e-40 173.3 303 38.0
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 4.4e-40 171.4 836 27.9
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 2.4e-38 165.6 1285 26.5
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 1.1e-35 156.8 1256 25.6
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 1.4e-33 149.8 1086 25.1
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 8.3e-31 140.6 1263 25.4
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 8.3e-31 140.6 1068 25.2
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.8e-30 139.4 392 33.2
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 3.8e-28 131.7 1070 24.7
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 8.6e-28 130.6 1233 24.0
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 7.3e-27 127.5 441 30.2
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 2.8e-26 125.6 1239 25.3
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 1.0e-25 123.6 386 31.3
BraA10t44531Z Brassica rapa HOM05D010678 ORTHO05D006673 3.0e-25 122.1 1229 26.2
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 6.8e-25 120.9 571 28.2
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 1.5e-24 119.8 1233 25.1
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 2.6e-24 119.0 470 30.6
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.3e-23 116.7 214 39.3
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 2.2e-23 115.9 1230 23.7
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 8.3e-23 114.0 1237 24.7
A10p24680 Brassica napus HOM05D010678 ORTHO05D006673 3.2e-22 112.1 1231 25.8
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 2.5e-19 102.4 890 25.4
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.3e-19 102.1 186 41.9
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 9.8e-16 90.5 989 24.5
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 1.7e-15 89.7 623 27.1
CsaV3_5G026070 Cucumis sativus L. HOM05D000283 ORTHO05D006673 4.1e-14 85.1 280 32.9
Solyc04g010130.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 4.1e-14 85.1 89 48.3
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 4.6e-13 81.6 398 27.1
COL.COLO4_31476 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.0e-12 80.5 46 80.4
BcaNung06336 Brassica carinata HOM05D010678 ORTHO05D006673 1.3e-12 80.1 533 25.3
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.3e-12 80.1 922 24.2
COL.COLO4_10625 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.5e-11 76.6 43 79.1
COL.COLO4_26050 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.5e-11 76.6 43 79.1
SGA_v2.0_scaffold44G16697 Striga asiatica HOM05D000283 ORTHO05D006673 2.5e-11 75.9 311 31.2
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 1.6e-10 73.2 760 23.8
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.6e-10 73.2 386 25.6
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.4e-09 70.1 421 27.6
Psat3g141160 Pisum sativum HOM05D000846 ORTHO05D001340 7.5e-08 64.3 186 33.9
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 1.1e-06 60.5 771 24.1
PGSC0003DMG400011488 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.2e-06 58.9 203 30.0


User provided reference genes

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