Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 9.6e-126 454.9 228 100.0
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 7.1e-121 438.7 226 97.8
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 3.5e-59 233.8 212 53.8
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 8.0e-56 222.6 204 55.4
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 2.6e-54 217.6 202 57.4
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 1.3e-53 215.3 214 52.3
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 2.4e-52 211.1 210 51.0
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 3.9e-50 203.8 221 48.9
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 1.1e-49 202.2 210 48.1
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 1.2e-48 198.7 238 45.8
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 6.8e-47 193.0 210 45.2
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 1.3e-45 188.7 215 48.8
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 2.2e-45 188.0 202 47.5
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 4.9e-45 186.8 215 48.4
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.1e-44 185.7 215 48.4
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 1.1e-44 185.7 212 47.6
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 4.1e-44 183.7 212 47.2
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 5.4e-44 183.3 171 55.6
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 7.0e-44 183.0 223 46.6
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 1.6e-43 181.8 232 44.0
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 4.6e-43 180.3 172 54.1
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 2.5e-41 174.5 180 49.4
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 5.6e-41 173.3 217 43.3
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 1.2e-40 172.2 198 48.5
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 1.2e-40 172.2 217 45.2
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 2.8e-40 171.0 194 48.5
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 1.1e-39 169.1 208 46.6
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 1.8e-39 168.3 236 41.1
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 9.9e-38 162.5 232 38.8
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 1.3e-37 162.2 181 48.6
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 1.7e-37 161.8 192 43.2
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 2.2e-37 161.4 216 43.1
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 6.4e-37 159.8 222 45.5
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 7.1e-36 156.4 220 41.8
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 7.1e-36 156.4 199 43.2
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 9.2e-36 156.0 193 45.1
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 1.2e-35 155.6 214 42.1
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 2.7e-35 154.5 191 44.5
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 2.7e-35 154.5 234 38.5
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 6.0e-35 153.3 189 45.5
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 1.0e-34 152.5 210 40.0
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 6.6e-34 149.8 172 48.3
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 6.6e-34 149.8 196 43.9
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 2.5e-33 147.9 171 46.8
Atru.chr8.977 Acer truncatum HOM05D004255 ORTHO05D004815 2.4e-31 141.4 90 78.9
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 3.1e-31 141.0 214 37.9
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 3.1e-31 141.0 158 46.2
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 6.8e-31 139.8 155 49.0
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 8.9e-31 139.4 215 39.5
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 8.9e-31 139.4 153 49.7
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 1.5e-30 138.7 190 40.0
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 2.0e-30 138.3 262 34.4
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 2.0e-30 138.3 167 46.7
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 2.0e-30 138.3 183 43.7
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 2.6e-30 137.9 215 38.6
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 3.4e-30 137.5 190 39.5
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 9.9e-30 136.0 190 43.7
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 1.3e-29 135.6 155 47.1
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.3e-29 135.6 215 38.1
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.3e-29 135.6 215 38.1
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 2.9e-29 134.4 211 37.9
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 1.4e-28 132.1 176 41.5
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 2.4e-28 131.3 189 42.3
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 2.4e-28 131.3 151 45.7
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 2.4e-28 131.3 175 43.4
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 9.2e-28 129.4 191 36.6
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 2.1e-27 128.3 207 37.2
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 3.5e-27 127.5 190 36.8
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 4.6e-27 127.1 179 40.2
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 1.3e-26 125.6 181 38.7
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 5.1e-26 123.6 203 32.5
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 5.1e-26 123.6 159 42.1
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 8.7e-26 122.9 202 36.1
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 8.7e-26 122.9 170 40.0
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.1e-25 122.5 178 40.4
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 2.5e-25 121.3 204 38.7
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 3.3e-25 120.9 217 36.4
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 3.3e-25 120.9 199 37.7
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 3.3e-25 120.9 192 37.5
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 9.6e-25 119.4 192 38.5
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 1.2e-24 119.0 184 34.8
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.1e-24 118.2 207 36.7
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 2.8e-24 117.9 128 49.2
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 3.6e-24 117.5 181 39.2
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 6.2e-24 116.7 127 46.5
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 1.1e-23 115.9 195 36.4
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 1.8e-23 115.2 174 40.8
Atru.chr13.2607 Acer truncatum HOM05D004255 ORTHO05D004815 2.4e-23 114.8 90 64.4
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 2.4e-23 114.8 169 40.2
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 5.2e-23 113.6 171 36.8
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 5.2e-23 113.6 140 44.3
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 1.2e-22 112.5 190 32.6
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 4.4e-22 110.5 160 39.4
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 7.6e-22 109.8 199 38.7
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 9.9e-22 109.4 193 32.6
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 2.2e-21 108.2 175 36.0
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 2.9e-21 107.8 162 35.8
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 3.8e-21 107.5 160 38.8
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 3.8e-21 107.5 139 41.0
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 4.9e-21 107.1 172 37.2
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 6.4e-21 106.7 175 35.4
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 6.4e-21 106.7 175 35.4
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.4e-20 105.5 145 40.0
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 2.4e-20 104.8 173 34.1
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 4.2e-20 104.0 187 34.8
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 4.2e-20 104.0 180 32.2
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 5.4e-20 103.6 171 36.3
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 9.3e-20 102.8 196 34.7
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 1.2e-19 102.4 156 35.3
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 4.6e-19 100.5 175 35.4
Sabra03G0004500 Salix brachista HOM05D004255 ORTHO05D004815 4.6e-19 100.5 128 46.1
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 6.0e-19 100.1 211 32.2
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 6.0e-19 100.1 181 33.7
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 1.0e-18 99.4 181 33.7
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 1.3e-18 99.0 156 37.2
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.7e-18 98.6 111 46.8
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.7e-18 98.6 170 35.9
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 3.0e-18 97.8 209 30.6
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 1.5e-17 95.5 162 38.3
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 1.9e-17 95.1 163 33.7
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 2.5e-17 94.7 224 30.8
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 1.6e-16 92.0 220 30.9
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 2.8e-16 91.3 155 35.5
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 4.8e-16 90.5 181 30.9
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 6.2e-16 90.1 97 45.4
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 2.4e-15 88.2 159 34.6
FAN02G2222 Fragaria x ananassa HOM05D004255 ORTHO05D004815 3.1e-15 87.8 79 55.7
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 1.5e-14 85.5 162 31.5
HanXRQChr09g0259341 Helianthus annuus HOM05D004255 ORTHO05D004815 7.6e-14 83.2 160 30.6
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 7.6e-14 83.2 151 36.4
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 1.4e-12 79.0 192 29.2
Ah.01g003110 Amaranthus hybridus HOM05D004255 ORTHO05D004815 4.2e-12 77.4 150 30.7
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 4.2e-12 77.4 218 24.8
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 5.4e-12 77.0 119 36.1
COL.COLO4_30932 Corchorus olitorius HOM05D000090 ORTHO05D004815 4.6e-11 73.9 89 42.7
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 6.0e-11 73.6 192 30.2
CANSAT21G1589 Cannabis sativa HOM05D004255 ORTHO05D004815 1.8e-10 72.0 80 45.0
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 3.0e-10 71.2 233 26.6
ECA238G3169 Erigeron canadensis HOM05D004255 ORTHO05D004815 3.9e-10 70.9 70 48.6
HPP92_026817 Vanilla planifolia HOM05D004255 ORTHO05D004815 1.1e-09 69.3 152 28.3
AL4G28030 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 2.5e-09 68.2 99 37.4
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 2.5e-09 68.2 211 28.0
Lj2P116T30 Lonicera japonica HOM05D004255 ORTHO05D004815 4.3e-09 67.4 56 55.4
RcHm_v2.0_Chr5g0058061 Rosa chinensis HOM05D004255 ORTHO05D004815 7.4e-09 66.6 111 41.4
Manes.11G149500 Manihot esculenta HOM05D004255 ORTHO05D004815 1.3e-08 65.9 166 29.5
ATR0124G035 Amborella trichopoda HOM05D007347 ORTHO05D009296 3.7e-08 64.3 191 25.7
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 3.7e-08 64.3 184 26.1
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 4.8e-08 63.9 215 27.4
Lj3g0007423 Lotus japonicus HOM05D007347 ORTHO05D009296 6.2e-08 63.5 203 27.6
Lj3g0013378 Lotus japonicus HOM05D006931 ORTHO05D008782 8.1e-08 63.2 172 27.9
Lj3g0024796 Lotus japonicus HOM05D006931 ORTHO05D008782 8.1e-08 63.2 172 27.9
ClCG02G021360 Citrullus lanatus HOM05D004255 ORTHO05D004815 1.1e-07 62.8 152 28.3
Migut.I00614 Erythranthe guttata HOM05D005764 ORTHO05D006600 1.8e-07 62.0 217 27.2
Rhsim08G0196300 Rhododendron simsii HOM05D005764 ORTHO05D006600 1.8e-07 62.0 210 27.1
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 1.8e-07 62.0 213 27.2
CANSAT11G1641 Cannabis sativa HOM05D004255 ORTHO05D004815 3.1e-07 61.2 52 53.8
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 5.3e-07 60.5 163 25.8
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 6.9e-07 60.1 180 26.7
SalBow7G2732 Salvia bowleyana HOM05D005764 ORTHO05D006600 1.5e-06 58.9 224 24.1
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 2.0e-06 58.5 192 26.0
Lalb_Chr11g0073041 Lupinus albus HOM05D004255 ORTHO05D004815 4.5e-06 57.4 45 62.2
Actinidia25528 Actinidia chinensis HOM05D005764 ORTHO05D006600 5.8e-06 57.0 143 30.1
Gorai.003G116400 Gossypium raimondii HOM05D005764 ORTHO05D006600 5.8e-06 57.0 213 24.9
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 7.6e-06 56.6 170 29.4
BolC5t29545H Brassica oleracea HOM05D006888 ORTHO05D008371 9.9e-06 56.2 178 25.8
BraA06t23865Z Brassica rapa HOM05D006888 ORTHO05D008371 9.9e-06 56.2 212 25.5
Carub.0001s0920 Capsella rubella HOM05D006888 ORTHO05D008371 9.9e-06 56.2 169 24.9


User provided reference genes

Program Settings