Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 2.1e-45 185.3 88 100.0
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 6.5e-15 84.0 84 54.8
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.2e-14 81.6 78 56.4
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.2e-14 81.3 78 56.4
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 4.2e-14 81.3 78 56.4
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 1.2e-13 79.7 83 59.0
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 2.1e-13 79.0 78 56.4
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 3.6e-13 78.2 84 53.6
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 6.1e-13 77.4 83 56.6
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 6.1e-13 77.4 83 60.2
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 6.1e-13 77.4 86 46.5
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 6.1e-13 77.4 84 56.0
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 1.0e-12 76.6 81 53.1
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.4e-12 76.3 82 51.2
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.4e-12 76.3 82 51.2
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.4e-12 76.3 84 51.2
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.8e-12 75.9 82 52.4
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 2.3e-12 75.5 86 44.2
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.0e-12 75.1 86 47.7
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 5.1e-12 74.3 85 48.2
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.1e-12 74.3 86 46.5
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 5.1e-12 74.3 83 48.2
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 6.7e-12 73.9 61 57.4
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 6.7e-12 73.9 61 57.4
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 6.7e-12 73.9 84 44.0
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 6.7e-12 73.9 73 49.3
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 6.7e-12 73.9 84 47.6
Cpa.g.sc19.256 Carica papaya HOM05D006892 ORTHO05D008592 8.8e-12 73.6 76 47.4
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 8.8e-12 73.6 81 45.7
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 8.8e-12 73.6 84 48.8
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 8.8e-12 73.6 75 49.3
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 1.1e-11 73.2 79 53.2
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 1.1e-11 73.2 85 47.1
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 1.1e-11 73.2 83 47.0
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 1.5e-11 72.8 81 58.0
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 1.5e-11 72.8 89 51.7
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.5e-11 72.8 83 48.2
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 2.0e-11 72.4 72 50.0
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 2.0e-11 72.4 72 50.0
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 2.0e-11 72.4 84 50.0
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 2.5e-11 72.0 88 43.2
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 2.5e-11 72.0 82 50.0
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 2.5e-11 72.0 85 47.1
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 3.3e-11 71.6 80 55.0
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 3.3e-11 71.6 86 44.2
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 4.3e-11 71.2 85 50.6
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 4.3e-11 71.2 85 51.8
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 4.3e-11 71.2 82 45.1
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 4.3e-11 71.2 83 47.0
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 5.7e-11 70.9 74 52.7
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 5.7e-11 70.9 84 44.0
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 7.4e-11 70.5 82 46.3
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 7.4e-11 70.5 82 46.3
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 7.4e-11 70.5 46 73.9
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 9.7e-11 70.1 85 45.9
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 1.3e-10 69.7 84 42.9
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.3e-10 69.7 77 48.1
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.3e-10 69.7 77 48.1
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 1.3e-10 69.7 75 48.0
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.3e-10 69.7 83 47.0
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.7e-10 69.3 77 48.1
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.7e-10 69.3 82 46.3
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 2.2e-10 68.9 48 62.5
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 2.8e-10 68.6 75 49.3
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 2.8e-10 68.6 75 49.3
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 2.8e-10 68.6 81 44.4
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.8e-10 68.6 77 46.8
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 3.7e-10 68.2 84 46.4
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 3.7e-10 68.2 85 44.7
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 4.8e-10 67.8 85 47.1
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 6.3e-10 67.4 83 47.0
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 8.2e-10 67.0 78 46.2
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 1.4e-09 66.2 75 42.7
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 1.4e-09 66.2 77 45.5
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.4e-09 66.2 85 44.7
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 1.8e-09 65.9 81 44.4
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.8e-09 65.9 87 47.1
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.8e-09 65.9 84 48.8
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.1e-09 65.1 46 54.3
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 3.1e-09 65.1 72 41.7
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 3.1e-09 65.1 78 46.2
arahy.Tifrunner.gnm1.ann1.J5YN7E Arachis hypogaea HOM05D006892 ORTHO05D008592 5.3e-09 64.3 85 41.2
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 5.3e-09 64.3 80 38.8
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 5.3e-09 64.3 82 47.6
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 5.3e-09 64.3 93 43.0
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 6.9e-09 63.9 81 49.4
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 6.9e-09 63.9 79 44.3
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.2e-08 63.2 55 54.5
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 3.4e-08 61.6 76 48.7
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 3.4e-08 61.6 79 45.6
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 3.4e-08 61.6 85 51.8
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 3.4e-08 61.6 83 38.6
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 4.5e-08 61.2 81 48.1
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 5.9e-08 60.8 86 50.0
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 5.9e-08 60.8 92 46.7
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 5.9e-08 60.8 84 40.5
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.0e-07 60.1 82 47.6
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 1.7e-07 59.3 86 38.4
Sc07g0007010 Simmondsia chinensis HOM05D006892 ORTHO05D008592 2.2e-07 58.9 92 40.2
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 5.0e-07 57.8 77 44.2
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 6.5e-07 57.4 51 52.9
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.1e-06 56.6 41 63.4
arahy.Tifrunner.gnm1.ann1.F5D7CA Arachis hypogaea HOM05D006892 ORTHO05D008592 2.5e-06 55.5 87 33.3
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 3.2e-06 55.1 80 38.8
SalBow6G4181 Salvia bowleyana HOM05D061281 ORTHO05D008592 4.2e-06 54.7 81 34.6
SalBow6G4537 Salvia bowleyana HOM05D061281 ORTHO05D008592 4.2e-06 54.7 81 34.6
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 9.4e-06 53.5 43 51.2


User provided reference genes

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