Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 0.0e+00 1498.0 835 100.0
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 3.8e-290 1001.5 870 66.1
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 2.1e-288 995.7 879 65.3
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 2.3e-287 992.3 881 65.3
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 1.8e-284 982.6 916 62.1
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.8e-284 982.6 840 66.0
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 2.6e-283 978.8 795 70.4
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 1.6e-280 969.5 838 66.5
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 1.1e-278 963.4 863 65.0
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 1.3e-277 959.9 871 64.2
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.7e-277 959.5 842 65.2
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 8.2e-277 957.2 863 64.8
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 1.1e-276 956.8 873 63.5
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 2.4e-276 955.7 871 64.4
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 3.1e-276 955.3 898 64.6
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 2.6e-270 935.6 868 62.7
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 7.0e-268 927.5 876 62.2
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 1.1e-265 920.2 919 58.8
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 2.5e-265 919.1 846 64.1
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 3.2e-265 918.7 888 60.5
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 2.0e-262 909.4 883 59.1
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 4.2e-257 891.7 920 58.4
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 9.5e-257 890.6 909 59.6
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 9.5e-257 890.6 855 60.7
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.0e-254 882.9 842 60.2
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.0e-254 882.9 872 61.2
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 7.5e-254 880.9 891 58.5
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 1.6e-251 873.2 840 59.9
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.6e-251 873.2 872 61.1
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.7e-251 872.5 879 60.0
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 3.5e-251 872.1 871 60.4
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 4.5e-251 871.7 840 60.1
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 7.8e-251 870.9 833 63.7
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.9e-250 869.0 881 59.3
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 3.3e-249 865.5 871 60.4
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 9.5e-249 864.0 768 63.5
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 6.1e-248 861.3 844 59.2
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 6.1e-248 861.3 873 60.5
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 5.2e-247 858.2 844 59.1
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 2.0e-246 856.3 879 57.6
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 9.8e-246 854.0 867 58.2
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 2.2e-245 852.8 838 59.7
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 2.9e-245 852.4 764 63.4
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 8.3e-245 850.9 876 58.9
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 2.7e-243 845.9 871 58.2
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 5.9e-243 844.7 876 56.8
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 1.7e-242 843.2 887 58.3
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 5.6e-241 838.2 867 58.5
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 2.8e-240 835.9 876 56.5
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 3.6e-240 835.5 846 59.0
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.4e-239 833.6 847 58.6
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 5.2e-239 831.6 857 56.6
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 1.3e-237 827.0 882 56.2
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.9e-237 825.9 878 58.2
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 3.7e-237 825.5 765 61.0
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 6.4e-237 824.7 858 57.8
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 8.3e-237 824.3 889 58.7
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 7.0e-236 821.2 765 61.4
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 2.7e-235 819.3 835 57.6
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 4.0e-231 805.4 858 57.7
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 1.2e-230 803.9 881 56.3
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 6.4e-229 798.1 835 57.1
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 8.3e-229 797.7 872 57.3
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.2e-227 793.9 872 57.1
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.5e-227 792.3 866 56.4
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.6e-227 792.0 872 57.1
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 6.0e-227 791.6 752 61.0
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 1.1e-225 787.3 841 57.4
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 1.5e-225 786.9 905 53.8
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 3.6e-224 782.3 860 55.5
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 6.2e-224 781.6 842 56.9
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 2.4e-220 769.6 828 57.5
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 7.6e-214 748.0 865 56.1
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 3.8e-213 745.7 866 54.4
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 8.4e-213 744.6 813 55.2
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 5.4e-212 741.9 905 51.0
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 9.3e-212 741.1 875 52.7
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 4.3e-209 732.3 874 51.5
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 5.6e-209 731.9 855 53.5
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.3e-208 730.7 665 63.5
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 3.1e-207 726.1 918 51.6
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 1.2e-206 724.2 852 54.8
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 1.2e-203 714.1 884 51.9
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.2e-203 714.1 860 52.7
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 1.3e-202 710.7 885 53.0
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 3.3e-201 706.1 794 54.7
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 2.1e-200 703.4 851 51.4
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 9.0e-199 698.0 867 50.6
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 2.6e-198 696.4 665 61.5
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 1.2e-195 687.6 864 51.4
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 2.1e-195 686.8 897 50.8
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 7.4e-193 678.3 869 50.2
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 8.4e-189 664.8 810 52.6
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 1.1e-188 664.5 788 52.9
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 5.5e-188 662.1 835 50.8
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.6e-187 660.6 852 49.6
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 1.8e-186 657.1 874 49.5
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 1.6e-184 650.6 869 49.0
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 3.7e-184 649.4 874 50.1
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 4.5e-182 642.5 842 49.6
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 1.1e-177 627.9 840 49.5
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 4.1e-175 619.4 696 58.2
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 3.6e-171 606.3 865 48.3
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 2.8e-168 596.7 804 48.8
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 4.8e-168 595.9 848 47.5
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 3.1e-167 593.2 715 51.2
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 5.3e-167 592.4 626 55.8
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 2.6e-166 590.1 733 50.5
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 1.6e-163 580.9 815 48.6
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 1.0e-162 578.2 904 45.7
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 3.7e-160 569.7 813 47.4
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 5.5e-156 555.8 749 49.3
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 3.0e-154 550.1 852 44.6
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 7.5e-153 545.4 755 49.4
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.5e-148 531.2 750 48.1
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 1.6e-147 527.7 750 47.7
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 3.6e-147 526.6 752 47.9
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 8.0e-147 525.4 839 44.7
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 1.2e-145 521.5 873 44.8
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 2.0e-145 520.8 792 45.8
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 1.7e-144 517.7 863 43.1
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 1.2e-142 511.5 813 43.7
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 2.0e-142 510.8 753 47.4
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 3.5e-142 510.0 837 44.0
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 3.8e-133 479.9 838 42.6
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 5.8e-129 466.1 751 45.0
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.6e-126 458.0 755 44.9
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 5.6e-124 449.5 745 45.0
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 6.2e-123 446.0 747 44.4
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 2.0e-121 441.0 746 44.1
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 9.8e-121 438.7 484 55.4
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 2.3e-117 427.6 745 43.9
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 3.9e-117 426.8 747 43.6
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 2.1e-107 394.4 763 41.4
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 3.9e-101 373.6 411 53.0
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 3.6e-99 367.1 318 65.1
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 3.6e-99 367.1 318 65.1
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 3.2e-87 327.4 379 53.0
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 2.9e-80 304.3 662 37.9
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 3.9e-77 293.9 940 30.2
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 5.3e-74 283.5 295 59.3
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 9.7e-68 262.7 733 33.2
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 1.3e-67 262.3 419 41.8
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 1.6e-67 261.9 745 33.8
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 8.2e-67 259.6 819 31.6
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 1.5e-65 255.4 778 33.7
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 2.4e-50 204.9 301 41.9
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 7.0e-50 203.4 832 28.4
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 1.3e-40 172.6 144 68.1
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 1.1e-39 169.5 159 59.1
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 4.7e-38 164.1 125 73.6
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 6.1e-38 163.7 145 64.8
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 4.4e-36 157.5 255 43.5
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 1.9e-31 142.1 174 50.0
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 9.1e-26 123.2 125 56.8
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 1.6e-25 122.5 77 83.1
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 2.7e-25 121.7 102 70.6
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 7.7e-25 120.2 120 58.3
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 3.8e-24 117.9 133 61.7
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 2.8e-22 111.7 134 47.0
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 4.7e-22 110.9 122 50.0
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 4.4e-20 104.4 130 46.2
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 7.0e-18 97.1 130 45.4
COL.COLO4_24960 Corchorus olitorius HOM05D003640 ORTHO05D004439 5.9e-17 94.0 99 64.6
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.3e-16 92.8 195 37.4
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 1.2e-14 86.3 83 65.1
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 4.7e-14 84.3 83 63.9
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 3.1e-13 81.6 210 32.9
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 7.5e-12 77.0 160 39.4
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 8.3e-11 73.6 450 26.9
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 8.3e-11 73.6 415 28.2
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 7.8e-09 67.0 59 59.3
CAN.G598.13 Capsicum annuum HOM05D003640 ORTHO05D004439 1.3e-08 66.2 197 32.0
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 6.6e-08 63.9 255 29.0
CAN.G358.52 Capsicum annuum HOM05D003640 ORTHO05D004439 1.9e-07 62.4 95 38.9
ECA232G0388 Erigeron canadensis HOM05D003640 ORTHO05D004439 4.3e-07 61.2 78 44.9
ECA233G3458 Erigeron canadensis HOM05D000153 ORTHO05D002648 4.3e-07 61.2 77 45.5


User provided reference genes

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