Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.2295 Acer truncatum HOM05D004993 ORTHO05D000001 4.0e-69 264.6 130 100.0
Hma1.2p1_0862F.1_g229960 Hydrangea macrophylla HOM05D004993 ORTHO05D008532 4.0e-29 131.7 134 49.3
Hma1.2p1_0270F.1_g108510 Hydrangea macrophylla HOM05D004993 ORTHO05D000001 1.7e-27 126.3 119 48.7
Hma1.2p1_0242F.1_g100810 Hydrangea macrophylla HOM05D004993 ORTHO05D012706 5.4e-26 121.3 134 45.5
Hma1.2p1_0315F.1_g122550 Hydrangea macrophylla HOM05D004993 ORTHO05D000001 5.4e-26 121.3 136 44.9
TPR.G512 Trifolium pratense HOM05D011146 ORTHO05D012706 2.7e-25 119.0 134 43.3
Hma1.2p1_0000F.1_g000910 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.3e-23 112.1 134 42.5
Hma1.2p1_0133F.1_g061100 Hydrangea macrophylla HOM05D004993 ORTHO05D000001 7.6e-20 100.9 113 43.4
Hma1.2p1_0022F.1_g014640 Hydrangea macrophylla HOM05D004993 ORTHO05D012706 1.1e-18 97.1 124 41.1
Hma1.2p1_0252F.1_g102700 Hydrangea macrophylla HOM05D000002 ORTHO05D012706 1.6e-17 93.2 110 43.6
TAR386G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 7.8e-17 90.9 98 40.8
COL.COLO4_06456 Corchorus olitorius HOM05D000002 ORTHO05D000001 3.0e-16 89.0 95 37.9
COL.COLO4_23623 Corchorus olitorius HOM05D000002 ORTHO05D000001 6.6e-16 87.8 94 38.3
Hma1.2p1_1611F.1_g293530 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.3e-15 85.1 103 37.9
SHI33760 Sapria himalayana HOM05D002029 ORTHO05D002158 2.8e-14 82.4 120 35.8
Atru.chr10.1206 Acer truncatum HOM05D000002 ORTHO05D000001 4.8e-14 81.6 83 45.8
Sopen08g008710 Solanum pennellii HOM05D000002 ORTHO05D000001 4.8e-14 81.6 101 36.6
Sopen05g011590 Solanum pennellii HOM05D000002 ORTHO05D000001 8.1e-14 80.9 101 36.6
Hma1.2p1_0001F.1_g001500 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.4e-13 79.3 89 36.0
COL.COLO4_20725 Corchorus olitorius HOM05D000002 ORTHO05D000001 5.3e-13 78.2 89 38.2
Hma1.2p1_1459F.1_g284890 Hydrangea macrophylla HOM05D011146 ORTHO05D012706 6.9e-13 77.8 106 39.6
COL.COLO4_14937 Corchorus olitorius HOM05D000002 ORTHO05D000001 2.0e-12 76.3 89 36.0
SGA_v2.0_scaffold2G01302 Striga asiatica HOM05D000033 ORTHO05D001614 3.4e-12 75.5 114 29.8
COL.COLO4_29402 Corchorus olitorius HOM05D000002 ORTHO05D000001 5.8e-12 74.7 89 34.8
Sopen07g023540 Solanum pennellii HOM05D000002 ORTHO05D000001 7.6e-12 74.3 101 35.6
QL03p028934 Quercus lobata HOM05D000002 ORTHO05D000001 2.2e-11 72.8 95 32.6
Sopen01g020860 Solanum pennellii HOM05D000002 ORTHO05D000001 2.2e-11 72.8 87 39.1
GSVIVG01036343001 Vitis vinifera HOM05D000067 ORTHO05D000097 2.2e-11 72.8 122 29.5
HanXRQChr00c0303g0573321 Helianthus annuus HOM05D000002 ORTHO05D000001 4.9e-11 71.6 113 31.9
COL.COLO4_33694 Corchorus olitorius HOM05D000002 ORTHO05D000001 8.4e-11 70.9 89 33.7
Atru.chr10.264 Acer truncatum HOM05D000002 ORTHO05D000001 1.4e-10 70.1 123 30.9
Rhsim05G0026100 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.4e-10 70.1 109 33.0
Rhsim08G0105700 Rhododendron simsii HOM05D000995 ORTHO05D000001 1.4e-10 70.1 93 35.5
HanXRQChr01g0008001 Helianthus annuus HOM05D000002 ORTHO05D000001 1.9e-10 69.7 122 30.3
HanXRQChr17g0568341 Helianthus annuus HOM05D000002 ORTHO05D000001 2.4e-10 69.3 121 33.9
COL.COLO4_24324 Corchorus olitorius HOM05D000002 ORTHO05D000001 3.2e-10 68.9 114 30.7
Sabra01G0117000 Salix brachista HOM05D000002 ORTHO05D000001 3.2e-10 68.9 120 30.0
Nn8g38577 Nelumbo nucifera HOM05D000002 ORTHO05D000001 7.1e-10 67.8 83 39.8
COL.COLO4_20536 Corchorus olitorius HOM05D000002 ORTHO05D000001 9.3e-10 67.4 105 31.4
COL.COLO4_30477 Corchorus olitorius HOM05D000002 ORTHO05D000001 9.3e-10 67.4 105 31.4
HanXRQChr09g0251421 Helianthus annuus HOM05D000530 ORTHO05D003341 9.3e-10 67.4 122 30.3
Aa31LG1G6100 Aethionema arabicum HOM05D000002 ORTHO05D000001 1.2e-09 67.0 89 24.7
HanXRQChr16g0523581 Helianthus annuus HOM05D000002 ORTHO05D000001 1.2e-09 67.0 122 30.3
Rhsim02G0228300 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.6e-09 66.6 112 27.7
HanXRQChr11g0320841 Helianthus annuus HOM05D000002 ORTHO05D000001 2.7e-09 65.9 115 32.2
TPR.G17518 Trifolium pratense HOM05D000002 ORTHO05D000001 2.7e-09 65.9 84 33.3
Aa31LG3G5060 Aethionema arabicum HOM05D000002 ORTHO05D000001 3.5e-09 65.5 89 27.0
Ah.11g039570 Amaranthus hybridus HOM05D000002 ORTHO05D000001 3.5e-09 65.5 101 33.7
Hma1.2p1_1527F.1_g289050 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.5e-09 65.5 128 28.9
SHI16346 Sapria himalayana HOM05D000002 ORTHO05D000001 3.5e-09 65.5 143 28.7
HanXRQChr14g0429151 Helianthus annuus HOM05D000002 ORTHO05D000001 4.6e-09 65.1 113 31.9
FvH4_2g26161 Fragaria vesca HOM05D000083 ORTHO05D001732 6.0e-09 64.7 90 34.4
MD00G1084700 Malus domestica HOM05D000002 ORTHO05D000001 7.8e-09 64.3 88 31.8
HanXRQChr17g0566031 Helianthus annuus HOM05D000002 ORTHO05D000001 1.3e-08 63.5 113 27.4
SHI16766 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-08 63.5 84 32.1
SHI35638 Sapria himalayana HOM05D000002 ORTHO05D000001 1.7e-08 63.2 131 29.8
Sopen07g003750 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-08 63.2 119 24.4
C09p34990 Brassica napus HOM05D000002 ORTHO05D000001 3.9e-08 62.0 101 29.7
Ciclev10003509m.g Citrus clementina HOM05D000002 ORTHO05D000001 3.9e-08 62.0 98 32.7
CsaV3_6G001980 Cucumis sativus L. HOM05D004993 ORTHO05D000001 3.9e-08 62.0 115 31.3
TPR.G24932 Trifolium pratense HOM05D000002 ORTHO05D000001 3.9e-08 62.0 84 29.8
ECA240G0774 Erigeron canadensis HOM05D000004 ORTHO05D000001 5.1e-08 61.6 99 31.3
QL08p052300 Quercus lobata HOM05D000002 ORTHO05D000001 5.1e-08 61.6 102 27.5
HanXRQChr02g0040961 Helianthus annuus HOM05D000002 ORTHO05D000001 6.6e-08 61.2 113 28.3
Lj3g0007998 Lotus japonicus HOM05D000002 ORTHO05D000001 6.6e-08 61.2 122 28.7
QL08p061042 Quercus lobata HOM05D000002 ORTHO05D000001 6.6e-08 61.2 102 28.4
SEGI_13448 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 6.6e-08 61.2 88 29.5
CAN.G349.10 Capsicum annuum HOM05D000002 ORTHO05D000001 8.7e-08 60.8 74 41.9
ClCG03G009350 Citrullus lanatus HOM05D007933 ORTHO05D000001 8.7e-08 60.8 87 32.2
Eucgr.F03845 Eucalyptus grandis HOM05D000053 ORTHO05D000035 8.7e-08 60.8 83 32.5
HanXRQChr07g0202651 Helianthus annuus HOM05D000002 ORTHO05D000001 8.7e-08 60.8 119 28.6
COL.COLO4_13671 Corchorus olitorius HOM05D000002 ORTHO05D000001 1.1e-07 60.5 93 33.3
MD13G1050200 Malus domestica HOM05D000002 ORTHO05D000001 1.1e-07 60.5 113 24.8
GSVIVG01016108001 Vitis vinifera HOM05D000002 ORTHO05D000001 1.1e-07 60.5 94 29.8
Atru.chr4.875 Acer truncatum HOM05D011146 ORTHO05D012706 1.5e-07 60.1 73 37.0
Hma1.2p1_0939F.1_g239370 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.5e-07 60.1 57 47.4
Hma1.2p1_1397F.1_g280780 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.5e-07 60.1 89 29.2
MD09G1100700 Malus domestica HOM05D000002 ORTHO05D000001 1.5e-07 60.1 107 31.8
CANSAT78G1493 Cannabis sativa HOM05D000002 ORTHO05D000001 1.9e-07 59.7 88 30.7
HanXRQChr14g0457051 Helianthus annuus HOM05D000002 ORTHO05D000001 1.9e-07 59.7 122 27.0
COL.COLO4_29142 Corchorus olitorius HOM05D000002 ORTHO05D000001 2.5e-07 59.3 136 25.7
Nn7g37430 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.5e-07 59.3 107 25.2
Psat4g210200 Pisum sativum HOM05D018610 ORTHO05D000001 2.5e-07 59.3 113 27.4
Psat7g120640 Pisum sativum HOM05D018610 ORTHO05D000001 2.5e-07 59.3 113 27.4
SHI11483 Sapria himalayana HOM05D014065 ORTHO05D000001 2.5e-07 59.3 82 31.7
TAR042G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 2.5e-07 59.3 89 28.1
HanXRQChr13g0407151 Helianthus annuus HOM05D000002 ORTHO05D000001 3.3e-07 58.9 120 25.0
Sopen12g009540 Solanum pennellii HOM05D000002 ORTHO05D000001 3.3e-07 58.9 63 42.9
VMungo1309G2055 Vigna mungo HOM05D008404 ORTHO05D000001 3.3e-07 58.9 81 34.6
CsaV3_1G024270 Cucumis sativus L. HOM05D000002 ORTHO05D000001 4.3e-07 58.5 104 25.0
Rhsim05G0062600 Rhododendron simsii HOM05D000002 ORTHO05D000001 4.3e-07 58.5 102 23.5
Aqoxy5G02395 Aquilegia oxysepala HOM05D000002 ORTHO05D000001 5.6e-07 58.2 88 25.0
Sopen01g012520 Solanum pennellii HOM05D000002 ORTHO05D000001 5.6e-07 58.2 134 21.6
THA.LOC104825733 Tarenaya hassleriana HOM05D000002 ORTHO05D000047 5.6e-07 58.2 86 27.9
Ciclev10013318m.g Citrus clementina HOM05D000002 ORTHO05D000001 7.3e-07 57.8 87 25.3
Hma1.2p1_0948F.1_g240460 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 7.3e-07 57.8 95 24.2
Psat2g189800 Pisum sativum HOM05D008404 ORTHO05D000001 7.3e-07 57.8 86 32.6
COL.COLO4_25328 Corchorus olitorius HOM05D000002 ORTHO05D000001 9.6e-07 57.4 136 25.0
MD13G1099200 Malus domestica HOM05D000002 ORTHO05D000001 9.6e-07 57.4 89 24.7
RcHm_v2.0_Chr4g0436951 Rosa chinensis HOM05D000002 ORTHO05D000001 9.6e-07 57.4 105 24.8
TPR.G15993 Trifolium pratense HOM05D000002 ORTHO05D000001 9.6e-07 57.4 87 27.6
Eucgr.E01636 Eucalyptus grandis HOM05D000002 ORTHO05D000001 1.3e-06 57.0 95 31.6
SHI50795 Sapria himalayana HOM05D004993 ORTHO05D000001 1.3e-06 57.0 52 44.2
SHI51781 Sapria himalayana HOM05D004993 ORTHO05D000001 1.3e-06 57.0 52 44.2
CANSAT25G2785 Cannabis sativa HOM05D000002 ORTHO05D000001 1.6e-06 56.6 114 27.2
HanXRQChr09g0254161 Helianthus annuus HOM05D000002 ORTHO05D000001 1.6e-06 56.6 123 28.5
HanXRQChr15g0491201 Helianthus annuus HOM05D000002 ORTHO05D000001 1.6e-06 56.6 134 23.1
Psat2g152960 Pisum sativum HOM05D000002 ORTHO05D000001 1.6e-06 56.6 122 24.6
HanXRQChr11g0320201 Helianthus annuus HOM05D000002 ORTHO05D000001 2.1e-06 56.2 119 25.2
Hma1.2p1_0565F.1_g179600 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.1e-06 56.2 57 45.6
RcHm_v2.0_Chr2g0119341 Rosa chinensis HOM05D000002 ORTHO05D000001 2.1e-06 56.2 104 26.0
COL.COLO4_38403 Corchorus olitorius HOM05D000002 ORTHO05D000001 2.8e-06 55.8 105 28.6
THA.LOC104806684 Tarenaya hassleriana HOM05D000002 ORTHO05D000047 2.8e-06 55.8 86 25.6
Atru.chr3.1003 Acer truncatum HOM05D000002 ORTHO05D000001 3.6e-06 55.5 103 27.2
Dinv06735 Davidia involucrata HOM05D000002 ORTHO05D000001 3.6e-06 55.5 100 26.0
FvH4_5g05651 Fragaria vesca HOM05D000002 ORTHO05D000001 3.6e-06 55.5 81 29.6
Oeu037102.1 Olea europaea HOM05D000002 ORTHO05D000001 3.6e-06 55.5 83 33.7
RcHm_v2.0_Chr7g0200091 Rosa chinensis HOM05D000002 ORTHO05D000001 3.6e-06 55.5 130 25.4
SHI34508 Sapria himalayana HOM05D004993 ORTHO05D000001 3.6e-06 55.5 52 44.2
SHI49824 Sapria himalayana HOM05D004993 ORTHO05D000001 3.6e-06 55.5 52 44.2
SHI49903 Sapria himalayana HOM05D004993 ORTHO05D000001 3.6e-06 55.5 52 44.2
HanXRQChr05g0138601 Helianthus annuus HOM05D000002 ORTHO05D000001 4.8e-06 55.1 114 26.3
Hma1.2p1_0020F.1_g014040 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.8e-06 55.1 95 24.2
Rhsim07G0113600 Rhododendron simsii HOM05D009466 ORTHO05D000001 4.8e-06 55.1 112 25.0
THA.LOC104815721 Tarenaya hassleriana HOM05D000002 ORTHO05D000047 4.8e-06 55.1 86 25.6
THA.LOC104821174 Tarenaya hassleriana HOM05D000002 ORTHO05D000047 4.8e-06 55.1 86 25.6
Atru.chr2.3036 Acer truncatum HOM05D000002 ORTHO05D000001 6.2e-06 54.7 83 31.3
HanXRQChr07g0187191 Helianthus annuus HOM05D000002 ORTHO05D000001 6.2e-06 54.7 114 26.3
RcHm_v2.0_Chr2g0112811 Rosa chinensis HOM05D000002 ORTHO05D000001 6.2e-06 54.7 80 30.0
TAR192G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 6.2e-06 54.7 83 28.9
Oeu011917.1 Olea europaea HOM05D000002 ORTHO05D000001 8.1e-06 54.3 83 33.7
RcHm_v2.0_Chr2g0156571 Rosa chinensis HOM05D000002 ORTHO05D000001 8.1e-06 54.3 83 30.1


User provided reference genes

Program Settings