Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 3.4e-179 631.7 329 100.0
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 6.8e-135 484.6 341 77.4
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 1.9e-124 449.9 351 71.5
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 2.1e-123 446.4 349 69.9
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 2.3e-122 443.0 343 71.7
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 3.6e-120 435.6 349 67.6
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 2.3e-119 433.0 361 67.6
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 6.8e-119 431.4 351 67.0
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 1.7e-117 426.8 348 65.8
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 2.9e-117 426.0 352 65.6
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 3.7e-117 425.6 366 65.0
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 6.4e-117 424.9 344 66.3
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 2.4e-116 422.9 359 64.9
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 3.2e-116 422.5 364 64.8
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 5.4e-116 421.8 364 64.8
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 7.1e-116 421.4 340 66.8
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 7.1e-116 421.4 340 66.8
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 7.1e-116 421.4 350 66.0
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 1.2e-115 420.6 356 64.0
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 1.6e-115 420.2 341 66.9
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 1.6e-115 420.2 355 64.5
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 2.1e-115 419.9 352 64.8
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 2.1e-115 419.9 347 66.3
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 2.7e-115 419.5 341 66.6
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 1.7e-114 416.8 354 65.5
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 5.1e-114 415.2 340 67.9
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 6.6e-114 414.8 351 65.2
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 1.1e-113 414.1 357 63.6
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 5.6e-113 411.8 324 68.5
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 5.6e-113 411.8 324 68.5
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 9.5e-113 411.0 356 65.4
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 1.2e-112 410.6 351 65.5
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 1.6e-112 410.2 353 64.6
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 3.6e-112 409.1 363 62.8
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 8.1e-112 407.9 364 65.4
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 8.1e-112 407.9 333 68.8
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 1.8e-111 406.8 312 69.2
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 5.2e-111 405.2 342 64.3
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 5.2e-111 405.2 342 64.3
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 5.2e-111 405.2 327 67.3
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 1.2e-110 404.1 362 64.6
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 2.6e-110 402.9 336 68.5
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 2.6e-110 402.9 351 65.8
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 4.4e-110 402.1 338 65.1
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 4.4e-110 402.1 336 65.2
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 9.9e-110 401.0 259 77.6
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 1.7e-109 400.2 257 77.8
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 3.8e-109 399.1 254 78.3
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 4.9e-109 398.7 387 58.4
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 8.4e-109 397.9 345 63.8
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 8.4e-109 397.9 383 58.2
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 8.4e-109 397.9 347 63.4
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 1.4e-108 397.1 338 64.8
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 2.4e-108 396.4 386 58.0
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 5.4e-108 395.2 304 70.1
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 5.4e-108 395.2 302 71.2
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.2e-107 394.0 329 66.6
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 1.2e-107 394.0 279 73.8
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.7e-107 392.9 250 78.0
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 4.6e-107 392.1 295 69.2
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 6.0e-107 391.7 329 67.2
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 7.8e-107 391.3 253 79.1
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 1.3e-106 390.6 328 64.3
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 3.0e-106 389.4 376 59.0
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 5.1e-106 388.7 250 75.6
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 6.6e-106 388.3 348 61.2
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 8.7e-106 387.9 251 77.7
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 8.7e-106 387.9 279 72.8
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.1e-105 387.5 251 79.3
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 2.5e-105 386.3 240 79.2
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 3.3e-105 386.0 368 60.9
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 7.3e-105 384.8 313 65.8
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 7.3e-105 384.8 240 79.2
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.2e-104 384.0 251 77.7
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 1.4e-103 380.6 345 61.2
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 2.4e-103 379.8 338 62.4
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 5.2e-103 378.6 379 58.3
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 9.0e-103 377.9 315 63.8
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.2e-102 377.5 314 65.9
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.2e-102 377.5 314 65.9
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 1.5e-102 377.1 342 61.1
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 2.0e-102 376.7 375 58.1
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 2.0e-102 376.7 335 61.5
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 3.4e-102 375.9 343 60.9
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 7.6e-102 374.8 341 60.4
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 7.6e-102 374.8 346 59.2
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 9.9e-102 374.4 277 69.7
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 9.9e-102 374.4 312 65.7
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 1.3e-101 374.0 343 60.6
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 1.3e-101 374.0 295 67.5
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 6.4e-101 371.7 313 63.9
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 6.4e-101 371.7 376 57.7
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 6.4e-101 371.7 327 61.5
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 1.4e-100 370.5 311 63.0
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 1.6e-99 367.1 251 74.5
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 6.0e-99 365.2 315 62.5
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 1.3e-98 364.0 224 79.0
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 3.9e-98 362.5 214 82.7
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 2.8e-96 356.3 314 62.7
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 2.8e-96 356.3 336 57.1
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 1.4e-95 354.0 246 72.4
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 6.9e-95 351.7 345 58.6
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 2.6e-94 349.7 249 70.3
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 3.4e-94 349.4 250 70.8
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 1.3e-93 347.4 271 66.1
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 4.2e-92 342.4 334 55.7
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 1.6e-91 340.5 230 72.6
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 9.6e-89 331.3 345 57.4
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 8.1e-88 328.2 189 83.6
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 6.9e-87 325.1 240 68.8
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 2.1e-83 313.5 229 67.2
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 2.7e-83 313.2 178 86.5
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.3e-82 310.8 178 87.1
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 3.3e-81 306.2 177 84.7
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 2.1e-80 303.5 223 66.8
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 5.8e-78 295.4 248 61.3
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.7e-77 293.9 259 57.9
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.7e-77 293.9 249 60.6
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 6.0e-75 285.4 195 73.8
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 8.7e-74 281.6 211 68.7
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 1.5e-73 280.8 223 62.8
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.9e-73 280.4 293 58.7
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 1.5e-65 254.2 163 77.3
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 9.1e-63 245.0 146 80.8
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 4.5e-62 242.7 146 81.5
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 1.3e-61 241.1 361 46.8
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.6e-59 234.2 130 86.9
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 2.6e-57 226.9 349 44.1
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 2.5e-52 210.3 126 79.4
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 7.2e-52 208.8 329 44.7
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.6e-49 200.3 213 46.9
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 7.4e-49 198.7 213 46.5
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 6.5e-45 185.7 314 39.8
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 5.5e-44 182.6 101 85.1
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 7.2e-44 182.2 101 85.1
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 7.2e-44 182.2 101 86.1
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 2.7e-43 180.3 101 85.1
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 2.7e-43 180.3 101 85.1
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 2.7e-43 180.3 101 84.2
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 2.3e-42 177.2 101 83.2
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 2.3e-42 177.2 101 83.2
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 3.0e-42 176.8 101 83.2
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 6.7e-42 175.6 101 82.2
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 6.7e-42 175.6 101 82.2
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 1.8e-39 167.5 237 42.6
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.5e-36 157.1 163 56.4
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 1.6e-35 154.5 255 35.7
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 2.6e-33 147.1 91 78.0
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.4e-31 141.4 213 46.9
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 1.2e-30 138.3 111 64.9
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.6e-30 137.9 199 50.8
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 2.0e-30 137.5 110 64.5
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 3.5e-30 136.7 73 91.8
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 3.5e-30 136.7 101 68.3
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 3.5e-30 136.7 73 91.8
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 3.5e-30 136.7 73 91.8
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.0e-29 135.2 233 43.8
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 2.9e-29 133.7 117 62.4
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 1.8e-26 124.4 180 43.3
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 2.2e-24 117.5 97 61.9
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 6.6e-21 105.9 63 79.4
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 7.3e-20 102.4 54 90.7
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 6.1e-19 99.4 179 33.0
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 8.9e-18 95.5 56 75.0
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 9.2e-15 85.5 73 67.1
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 2.0e-14 84.3 44 93.2
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 7.8e-14 82.4 49 75.5
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 1.5e-12 78.2 71 59.2


User provided reference genes

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