Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.2090 Acer truncatum HOM05D000132 ORTHO05D000058 2.1e-17 92.8 45 100.0
Atru.chr1.954 Acer truncatum HOM05D000132 ORTHO05D000058 5.4e-13 78.2 45 80.0
Atru.chr1.772 Acer truncatum HOM05D000132 ORTHO05D000058 3.9e-11 72.0 45 73.3
Atru.chr1.792 Acer truncatum HOM05D000132 ORTHO05D000058 3.9e-11 72.0 45 73.3
Atru.chr9.1697 Acer truncatum HOM05D000132 ORTHO05D000058 1.2e-09 67.0 44 72.7
Atru.chr9.1701 Acer truncatum HOM05D000132 ORTHO05D000058 1.2e-09 67.0 44 72.7
FvH4_5g37490 Fragaria vesca HOM05D000132 ORTHO05D000058 2.8e-09 65.9 45 66.7
CiPaw.10G021000 Carya illinoinensis HOM05D000132 ORTHO05D127709 3.6e-09 65.5 45 71.1
Haze_22397 Corylus avellana HOM05D000132 ORTHO05D000058 1.1e-08 63.9 45 66.7
Haze_22405 Corylus avellana HOM05D000132 ORTHO05D000058 1.1e-08 63.9 45 66.7
FAN18G3128 Fragaria x ananassa HOM05D000132 ORTHO05D000058 1.8e-08 63.2 45 64.4
RcHm_v2.0_Chr7g0239131 Rosa chinensis HOM05D000132 ORTHO05D000058 1.8e-08 63.2 45 64.4
Cfa013746 Carpinus fangiana HOM05D000132 ORTHO05D000058 2.4e-08 62.8 45 64.4
FAN04G1104 Fragaria x ananassa HOM05D000132 ORTHO05D000058 2.4e-08 62.8 45 64.4
MD08G1094600 Malus domestica HOM05D000132 ORTHO05D000058 2.4e-08 62.8 45 64.4
Prupe.1G514100 Prunus persica HOM05D000132 ORTHO05D000058 2.4e-08 62.8 45 66.7
CiPaw.10G020800 Carya illinoinensis HOM05D000132 ORTHO05D000058 3.1e-08 62.4 45 68.9
FAN08G2365 Fragaria x ananassa HOM05D000132 ORTHO05D000058 3.1e-08 62.4 45 62.2
MD08G1025100 Malus domestica HOM05D000132 ORTHO05D000058 3.1e-08 62.4 45 64.4
Prupe.3G116000 Prunus persica HOM05D000132 ORTHO05D000058 3.1e-08 62.4 41 70.7
RcHm_v2.0_Chr3g0493891 Rosa chinensis HOM05D000132 ORTHO05D000058 4.0e-08 62.0 45 64.4
FAN08G3510 Fragaria x ananassa HOM05D000132 ORTHO05D000058 5.2e-08 61.6 45 62.2
FAN13G1200 Fragaria x ananassa HOM05D000132 ORTHO05D000058 5.2e-08 61.6 45 62.2
Prupe.8G061100 Prunus persica HOM05D000132 ORTHO05D000058 5.2e-08 61.6 41 70.7
Ciclev10024208m.g Citrus clementina HOM05D000132 ORTHO05D000058 6.8e-08 61.2 45 66.7
Haze_22398 Corylus avellana HOM05D000132 ORTHO05D000058 6.8e-08 61.2 45 64.4
Haze_22406 Corylus avellana HOM05D000132 ORTHO05D000058 6.8e-08 61.2 45 64.4
QL03p032117 Quercus lobata HOM05D000132 ORTHO05D000058 6.8e-08 61.2 45 66.7
RcHm_v2.0_Chr4g0409901 Rosa chinensis HOM05D000132 ORTHO05D000058 6.8e-08 61.2 45 62.2
CiPaw.14G079600 Carya illinoinensis HOM05D000132 ORTHO05D000058 8.9e-08 60.8 45 64.4
Cfa013745 Carpinus fangiana HOM05D000132 ORTHO05D000058 1.2e-07 60.5 43 65.1
CiPaw.11G041000 Carya illinoinensis HOM05D000132 ORTHO05D000058 1.2e-07 60.5 45 64.4
Ciclev10027783m.g Citrus clementina HOM05D000132 ORTHO05D000058 1.2e-07 60.5 45 62.2
QL01p041924 Quercus lobata HOM05D000132 ORTHO05D000058 1.2e-07 60.5 45 66.7
MD03G1036100 Malus domestica HOM05D000132 ORTHO05D000058 1.5e-07 60.1 45 62.2
Prupe.1G515300 Prunus persica HOM05D000132 ORTHO05D000058 1.5e-07 60.1 41 68.3
Prupe.7G014300 Prunus persica HOM05D000132 ORTHO05D000058 1.5e-07 60.1 41 70.7
RcHm_v2.0_Chr7g0239161 Rosa chinensis HOM05D000132 ORTHO05D000058 1.5e-07 60.1 45 62.2
Ciclev10027723m.g Citrus clementina HOM05D000132 ORTHO05D000058 2.0e-07 59.7 45 64.4
RcHm_v2.0_Chr5g0027431 Rosa chinensis HOM05D000132 ORTHO05D000058 2.0e-07 59.7 45 64.4
CiPaw.11G040300 Carya illinoinensis HOM05D000132 ORTHO05D000058 2.6e-07 59.3 40 70.0
Lj3A530T29 Lonicera japonica HOM05D000132 ORTHO05D000058 2.6e-07 59.3 40 70.0
QL09p022166 Quercus lobata HOM05D000132 ORTHO05D000058 2.6e-07 59.3 43 65.1
RcHm_v2.0_Chr7g0238291 Rosa chinensis HOM05D000132 ORTHO05D000058 2.6e-07 59.3 45 62.2
CiPaw.08G044600 Carya illinoinensis HOM05D000132 ORTHO05D000058 3.4e-07 58.9 45 64.4
FvH4_5g37790 Fragaria vesca HOM05D000132 ORTHO05D000058 3.4e-07 58.9 45 62.2
FAN08G3198 Fragaria x ananassa HOM05D000132 ORTHO05D000058 3.4e-07 58.9 45 66.7
FAN18G0631 Fragaria x ananassa HOM05D000132 ORTHO05D000058 3.4e-07 58.9 45 62.2
RcHm_v2.0_Chr7g0221511 Rosa chinensis HOM05D000132 ORTHO05D000058 3.4e-07 58.9 42 64.3
FAN08G2600 Fragaria x ananassa HOM05D000132 ORTHO05D000058 4.4e-07 58.5 45 64.4
FAN25G0046 Fragaria x ananassa HOM05D000132 ORTHO05D000058 4.4e-07 58.5 45 62.2
MD15G1437400 Malus domestica HOM05D000132 ORTHO05D000058 4.4e-07 58.5 45 62.2
Prupe.1G515900 Prunus persica HOM05D000132 ORTHO05D000058 4.4e-07 58.5 45 62.2
Prupe.1G516000 Prunus persica HOM05D000132 ORTHO05D000058 4.4e-07 58.5 45 64.4
Prupe.3G116100 Prunus persica HOM05D000132 ORTHO05D000058 4.4e-07 58.5 41 68.3
TWI14G0378 Tripterygium wilfordii HOM05D000132 ORTHO05D000058 4.4e-07 58.5 45 62.2
Lj3C529T1 Lonicera japonica HOM05D000132 ORTHO05D000058 5.8e-07 58.2 40 70.0
Lj3C547T0 Lonicera japonica HOM05D000132 ORTHO05D000058 5.8e-07 58.2 40 70.0
TAR625G0249 Trochodendron aralioides HOM05D000132 ORTHO05D000058 5.8e-07 58.2 45 64.4
Ciclev10010205m.g Citrus clementina HOM05D000132 ORTHO05D000058 7.6e-07 57.8 45 64.4
FvH4_5g37510 Fragaria vesca HOM05D000132 ORTHO05D000058 7.6e-07 57.8 45 60.0
FAN08G1381 Fragaria x ananassa HOM05D000132 ORTHO05D000058 7.6e-07 57.8 45 64.4
Lj3A498T23 Lonicera japonica HOM05D000132 ORTHO05D000058 7.6e-07 57.8 40 67.5
Lj9A76T22 Lonicera japonica HOM05D000132 ORTHO05D000058 7.6e-07 57.8 42 61.9
Prupe.1G510800 Prunus persica HOM05D000132 ORTHO05D000058 7.6e-07 57.8 41 68.3
Prupe.6G161700 Prunus persica HOM05D000132 ORTHO05D000058 7.6e-07 57.8 40 67.5
CiPaw.12G014600 Carya illinoinensis HOM05D000132 ORTHO05D000058 9.9e-07 57.4 45 60.0
Ciclev10030281m.g Citrus clementina HOM05D000132 ORTHO05D000058 9.9e-07 57.4 45 64.4
FvH4_5g37480 Fragaria vesca HOM05D000132 ORTHO05D000058 9.9e-07 57.4 45 60.0
FAN04G2339 Fragaria x ananassa HOM05D000132 ORTHO05D000058 9.9e-07 57.4 45 57.8
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 9.9e-07 57.4 45 57.8
FAN18G0554 Fragaria x ananassa HOM05D000132 ORTHO05D000058 9.9e-07 57.4 45 60.0
MD08G1175000 Malus domestica HOM05D000132 ORTHO05D000058 9.9e-07 57.4 45 60.0
Prupe.1G515500 Prunus persica HOM05D000132 ORTHO05D013543 9.9e-07 57.4 41 65.9
RcHm_v2.0_Chr7g0213801 Rosa chinensis HOM05D000132 ORTHO05D000058 9.9e-07 57.4 45 57.8
RcHm_v2.0_Chr7g0233271 Rosa chinensis HOM05D000132 ORTHO05D000058 9.9e-07 57.4 41 63.4
RcHm_v2.0_Chr7g0239151 Rosa chinensis HOM05D000132 ORTHO05D000058 9.9e-07 57.4 42 61.9
RcHm_v2.0_Chr7g0239171 Rosa chinensis HOM05D000132 ORTHO05D000058 9.9e-07 57.4 45 57.8
CiPaw.12G015100 Carya illinoinensis HOM05D000132 ORTHO05D000058 1.3e-06 57.0 41 65.9
Ciclev10018678m.g Citrus clementina HOM05D000132 ORTHO05D000058 1.3e-06 57.0 39 71.8
Ciclev10023370m.g Citrus clementina HOM05D000132 ORTHO05D000058 1.3e-06 57.0 44 63.6
Dinv00835 Davidia involucrata HOM05D000132 ORTHO05D000058 1.3e-06 57.0 44 56.8
FAN25G0095 Fragaria x ananassa HOM05D000132 ORTHO05D000058 1.3e-06 57.0 44 61.4
Lj1C1103G10 Lonicera japonica HOM05D000132 ORTHO05D000058 1.3e-06 57.0 41 63.4
Lj1C1104G4 Lonicera japonica HOM05D000132 ORTHO05D000058 1.3e-06 57.0 41 63.4
Lj3C528G5 Lonicera japonica HOM05D000132 ORTHO05D000058 1.3e-06 57.0 40 67.5
Lj9C70T1 Lonicera japonica HOM05D000132 ORTHO05D000058 1.3e-06 57.0 44 61.4
PSO421G0275 Papaver somniferum HOM05D000071 ORTHO05D003524 1.3e-06 57.0 45 62.2
Prupe.4G283700 Prunus persica HOM05D000132 ORTHO05D000058 1.3e-06 57.0 45 55.6
QL09p022717 Quercus lobata HOM05D000132 ORTHO05D000058 1.3e-06 57.0 43 62.8
QL09p022905 Quercus lobata HOM05D000132 ORTHO05D000058 1.3e-06 57.0 43 62.8
Thecc.08G107800 Theobroma cacao HOM05D000132 ORTHO05D000058 1.3e-06 57.0 44 61.4
Dinv00834 Davidia involucrata HOM05D000132 ORTHO05D000058 1.7e-06 56.6 44 56.8
Dinv13019 Davidia involucrata HOM05D000132 ORTHO05D000058 1.7e-06 56.6 44 56.8
FAN11G0930 Fragaria x ananassa HOM05D000132 ORTHO05D000058 1.7e-06 56.6 44 59.1
Potri.019G129400 Populus trichocarpa HOM05D000132 ORTHO05D000058 1.7e-06 56.6 42 64.3
Prupe.3G157900 Prunus persica HOM05D000132 ORTHO05D000058 1.7e-06 56.6 41 65.9
RcHm_v2.0_Chr3g0483131 Rosa chinensis HOM05D000132 ORTHO05D000058 1.7e-06 56.6 45 60.0
RcHm_v2.0_Chr5g0021681 Rosa chinensis HOM05D000132 ORTHO05D000058 1.7e-06 56.6 45 57.8
RcHm_v2.0_Chr7g0213681 Rosa chinensis HOM05D000132 ORTHO05D000058 1.7e-06 56.6 45 57.8
RcHm_v2.0_Chr7g0239091 Rosa chinensis HOM05D000132 ORTHO05D000058 1.7e-06 56.6 45 57.8
TWI56G0198 Tripterygium wilfordii HOM05D000132 ORTHO05D000058 1.7e-06 56.6 41 65.9
Ciclev10018816m.g Citrus clementina HOM05D000132 ORTHO05D000058 2.2e-06 56.2 45 62.2
Lj4C269T3 Lonicera japonica HOM05D000132 ORTHO05D000058 2.2e-06 56.2 40 67.5
MD08G1178900 Malus domestica HOM05D000132 ORTHO05D000058 2.2e-06 56.2 45 57.8
MD08G1179200 Malus domestica HOM05D000132 ORTHO05D000058 2.2e-06 56.2 45 57.8
MD15G1367800 Malus domestica HOM05D000132 ORTHO05D000058 2.2e-06 56.2 45 62.2
Prupe.3G171200 Prunus persica HOM05D000132 ORTHO05D000058 2.2e-06 56.2 45 60.0
QL09p018502 Quercus lobata HOM05D000132 ORTHO05D000058 2.2e-06 56.2 44 59.1
QL09p022121 Quercus lobata HOM05D000132 ORTHO05D000058 2.2e-06 56.2 43 62.8
RcHm_v2.0_Chr5g0023521 Rosa chinensis HOM05D000132 ORTHO05D000058 2.2e-06 56.2 44 61.4
Ciclev10017577m.g Citrus clementina HOM05D000132 ORTHO05D000058 2.9e-06 55.8 45 62.2
ECA232G1567 Erigeron canadensis HOM05D000132 ORTHO05D000058 2.9e-06 55.8 45 55.6
FAN18G0109 Fragaria x ananassa HOM05D000132 ORTHO05D000058 2.9e-06 55.8 41 61.0
Hma1.2p1_1721F.1_g299320 Hydrangea macrophylla HOM05D000132 ORTHO05D000058 2.9e-06 55.8 40 65.0
Lj3C537T0 Lonicera japonica HOM05D000132 ORTHO05D000058 2.9e-06 55.8 40 65.0
Lj4A268G29 Lonicera japonica HOM05D000132 ORTHO05D000058 2.9e-06 55.8 40 65.0
Lj4C699G3 Lonicera japonica HOM05D000132 ORTHO05D000058 2.9e-06 55.8 45 64.4
Potri.019G129300 Populus trichocarpa HOM05D000132 ORTHO05D000058 2.9e-06 55.8 42 61.9
RcHm_v2.0_Chr7g0221461 Rosa chinensis HOM05D000132 ORTHO05D000058 2.9e-06 55.8 41 63.4
TWI56G0008 Tripterygium wilfordii HOM05D000132 ORTHO05D000058 2.9e-06 55.8 41 63.4
Ciclev10023662m.g Citrus clementina HOM05D000132 ORTHO05D000058 3.8e-06 55.5 39 69.2
Cc10_g07280 Coffea canephora HOM05D000132 ORTHO05D000058 3.8e-06 55.5 44 54.5
Cc10_g07290 Coffea canephora HOM05D000132 ORTHO05D000058 3.8e-06 55.5 44 54.5
ECA232G4102 Erigeron canadensis HOM05D000014 ORTHO05D000093 3.8e-06 55.5 45 55.6
FAN04G2878 Fragaria x ananassa HOM05D000132 ORTHO05D000058 3.8e-06 55.5 43 60.5
FAN08G1442 Fragaria x ananassa HOM05D000132 ORTHO05D000058 3.8e-06 55.5 44 63.6
HanXRQChr03g0068111 Helianthus annuus HOM05D000132 ORTHO05D000058 3.8e-06 55.5 44 54.5
Prupe.1G515800 Prunus persica HOM05D000132 ORTHO05D000058 3.8e-06 55.5 41 63.4
Prupe.3G115800 Prunus persica HOM05D000132 ORTHO05D000058 3.8e-06 55.5 43 62.8
QL09p021866 Quercus lobata HOM05D000132 ORTHO05D000058 3.8e-06 55.5 44 59.1
RcHm_v2.0_Chr4g0412541 Rosa chinensis HOM05D000132 ORTHO05D000058 3.8e-06 55.5 45 57.8
TWI56G0547 Tripterygium wilfordii HOM05D000132 ORTHO05D000058 3.8e-06 55.5 41 63.4
Ciclev10004321m.g Citrus clementina HOM05D000132 ORTHO05D000058 4.9e-06 55.1 45 57.8
FAN16G1737 Fragaria x ananassa HOM05D000132 ORTHO05D000058 4.9e-06 55.1 43 60.5
Lj1C1104G14 Lonicera japonica HOM05D000132 ORTHO05D000058 4.9e-06 55.1 41 61.0
Lj3A547T67 Lonicera japonica HOM05D000132 ORTHO05D000058 4.9e-06 55.1 40 65.0
MD08G1025500 Malus domestica HOM05D000132 ORTHO05D000058 4.9e-06 55.1 44 56.8
Nn2g12525 Nelumbo nucifera HOM05D000528 ORTHO05D000058 4.9e-06 55.1 45 57.8
PSO782G1313 Papaver somniferum HOM05D000132 ORTHO05D000058 4.9e-06 55.1 40 67.5
TWI12G0948 Tripterygium wilfordii HOM05D000132 ORTHO05D000058 4.9e-06 55.1 45 57.8
TWI36G1192 Tripterygium wilfordii HOM05D000132 ORTHO05D000058 4.9e-06 55.1 40 60.0
CiPaw.10G020900 Carya illinoinensis HOM05D000132 ORTHO05D000058 6.4e-06 54.7 45 64.4
CiPaw.10G111900 Carya illinoinensis HOM05D000132 ORTHO05D000058 6.4e-06 54.7 44 61.4
Hma1.2p1_0792F.1_g218530 Hydrangea macrophylla HOM05D000132 ORTHO05D000058 6.4e-06 54.7 45 57.8
Lj3C498G2 Lonicera japonica HOM05D000132 ORTHO05D000058 6.4e-06 54.7 39 64.1
Lj3P518T8 Lonicera japonica HOM05D000132 ORTHO05D000058 6.4e-06 54.7 42 57.1
Manes.14G036600 Manihot esculenta HOM05D000132 ORTHO05D000058 6.4e-06 54.7 41 63.4
PSO423G0020 Papaver somniferum HOM05D000132 ORTHO05D000058 6.4e-06 54.7 45 60.0
PSO596G0022 Papaver somniferum HOM05D000132 ORTHO05D000058 6.4e-06 54.7 45 60.0
QL09p022424 Quercus lobata HOM05D000132 ORTHO05D000058 6.4e-06 54.7 45 55.6
QL09p022782 Quercus lobata HOM05D000132 ORTHO05D000058 6.4e-06 54.7 43 60.5
RcHm_v2.0_Chr7g0239251 Rosa chinensis HOM05D000132 ORTHO05D000058 6.4e-06 54.7 45 57.8
TWI12G0459 Tripterygium wilfordii HOM05D000132 ORTHO05D000058 6.4e-06 54.7 45 57.8
TWI12G0666 Tripterygium wilfordii HOM05D000132 ORTHO05D000058 6.4e-06 54.7 45 55.6
Ciclev10023899m.g Citrus clementina HOM05D000132 ORTHO05D000058 8.4e-06 54.3 41 63.4
Duzib041G0507 Durio zibethinus HOM05D000132 ORTHO05D000058 8.4e-06 54.3 45 57.8
Duzib041G0509 Durio zibethinus HOM05D000132 ORTHO05D000058 8.4e-06 54.3 45 57.8
Lj3A330T22 Lonicera japonica HOM05D000132 ORTHO05D000058 8.4e-06 54.3 40 65.0
Lj3C554T4 Lonicera japonica HOM05D000132 ORTHO05D000058 8.4e-06 54.3 41 63.4
Prupe.2G064900 Prunus persica HOM05D000132 ORTHO05D000058 8.4e-06 54.3 43 58.1
Prupe.4G268100 Prunus persica HOM05D000132 ORTHO05D000058 8.4e-06 54.3 43 58.1
QL03p072569 Quercus lobata HOM05D000132 ORTHO05D000058 8.4e-06 54.3 43 55.8
RcHm_v2.0_Chr7g0239661 Rosa chinensis HOM05D000132 ORTHO05D000058 8.4e-06 54.3 38 68.4
GSVIVG01008434001 Vitis vinifera HOM05D000132 ORTHO05D000058 8.4e-06 54.3 45 55.6


User provided reference genes

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