Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 2.2e-134 482.3 237 100.0
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 1.9e-53 213.4 232 53.9
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 4.1e-48 195.7 241 49.8
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 7.0e-48 194.9 241 51.5
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 1.3e-46 190.7 243 50.6
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 2.0e-42 176.8 235 48.9
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 4.4e-42 175.6 242 47.5
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 4.4e-42 175.6 241 47.7
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 7.5e-42 174.9 238 48.7
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 3.7e-41 172.6 238 48.3
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 4.9e-41 172.2 246 43.9
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 1.1e-40 171.0 238 47.5
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 1.4e-40 170.6 224 47.8
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 3.2e-40 169.5 252 46.0
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 7.0e-40 168.3 238 45.8
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 3.5e-39 166.0 245 44.5
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 6.0e-39 165.2 244 43.9
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 6.0e-39 165.2 250 45.6
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 1.3e-38 164.1 237 48.9
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 1.7e-38 163.7 251 46.2
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.7e-38 163.7 245 44.9
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 3.0e-38 162.9 257 45.1
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 3.0e-38 162.9 252 44.0
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 3.9e-38 162.5 244 45.5
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.5e-37 160.6 237 46.4
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 1.9e-37 160.2 246 43.9
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 2.5e-37 159.8 260 45.4
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 2.5e-37 159.8 259 40.5
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 2.5e-37 159.8 238 45.8
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 4.3e-37 159.1 243 43.2
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 5.6e-37 158.7 243 44.0
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 7.3e-37 158.3 256 42.6
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 9.5e-37 157.9 255 45.1
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 3.6e-36 156.0 242 43.0
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 4.7e-36 155.6 252 46.0
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 1.4e-35 154.1 237 44.7
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 3.1e-35 152.9 241 45.2
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 4.0e-35 152.5 246 41.5
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 6.8e-35 151.8 236 43.6
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 8.9e-35 151.4 271 42.1
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 2.0e-34 150.2 249 40.6
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 2.6e-34 149.8 271 43.2
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 4.4e-34 149.1 229 44.1
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 4.4e-34 149.1 247 44.1
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.3e-33 147.5 250 40.4
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 1.7e-33 147.1 239 39.3
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 2.2e-33 146.7 216 48.1
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 2.9e-33 146.4 210 48.6
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 2.9e-33 146.4 228 43.9
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 6.4e-33 145.2 247 42.5
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 1.9e-32 143.7 238 42.9
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 3.2e-32 142.9 247 42.1
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 4.1e-32 142.5 267 39.7
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 1.6e-31 140.6 241 41.9
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 2.1e-31 140.2 242 44.2
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 2.1e-31 140.2 241 44.4
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 7.8e-31 138.3 256 42.6
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 7.8e-31 138.3 246 39.8
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 1.0e-30 137.9 245 41.2
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 2.3e-30 136.7 243 40.3
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 2.3e-30 136.7 243 41.2
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 3.0e-30 136.3 233 39.9
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 3.9e-30 136.0 257 42.8
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 5.1e-30 135.6 254 40.2
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 1.9e-29 133.7 270 36.3
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 1.9e-29 133.7 244 38.5
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 1.9e-29 133.7 244 38.9
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 1.9e-29 133.7 238 41.2
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.5e-29 133.3 248 39.5
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 4.3e-29 132.5 233 40.3
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 7.3e-29 131.7 219 46.6
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 9.5e-29 131.3 233 39.9
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 1.2e-28 131.0 233 39.9
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 2.1e-28 130.2 242 37.6
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 2.8e-28 129.8 241 39.4
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 2.8e-28 129.8 249 38.2
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 3.6e-28 129.4 254 41.7
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 6.2e-28 128.6 243 39.9
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 6.2e-28 128.6 230 42.6
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 8.1e-28 128.3 235 37.0
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 4.0e-27 125.9 246 39.4
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 8.9e-27 124.8 243 37.9
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 8.9e-27 124.8 241 38.6
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 2.6e-26 123.2 246 36.6
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 4.4e-26 122.5 244 36.9
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 5.8e-26 122.1 230 37.8
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 1.7e-25 120.6 239 38.5
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 2.9e-25 119.8 251 39.8
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 3.7e-25 119.4 239 39.3
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 4.9e-25 119.0 241 36.1
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 8.3e-25 118.2 232 38.4
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 1.4e-24 117.5 248 38.3
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 3.2e-24 116.3 249 38.6
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 9.2e-24 114.8 247 38.1
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 7.8e-23 111.7 247 37.7
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 3.0e-22 109.8 248 35.9
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 3.0e-22 109.8 227 34.4
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 5.1e-22 109.0 237 36.7
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 2.5e-21 106.7 195 41.5
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 2.5e-21 106.7 237 35.4
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 3.3e-21 106.3 218 38.1
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 7.3e-21 105.1 243 39.9
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 7.3e-21 105.1 248 34.7
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 6.2e-20 102.1 234 36.3
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 6.2e-20 102.1 239 35.6
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 5.2e-19 99.0 240 37.5
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 2.6e-18 96.7 236 36.4
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 1.3e-17 94.4 242 32.6
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 2.9e-17 93.2 256 36.7
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 2.9e-17 93.2 233 35.2
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 4.9e-17 92.4 103 49.5
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 8.4e-17 91.7 103 47.6
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 1.1e-16 91.3 103 48.5
Peaxi162Scf00740g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 1.4e-16 90.9 103 47.6
Prupe.1G455900 Prunus persica HOM05D005081 ORTHO05D005506 1.4e-16 90.9 237 33.3
Peaxi162Scf00460g00005 Petunia axillaris HOM05D005081 ORTHO05D005506 2.4e-16 90.1 103 47.6
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 5.4e-16 89.0 243 33.3
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 7.1e-16 88.6 240 30.4
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 1.6e-15 87.4 244 33.6
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 1.0e-14 84.7 253 33.2
Peaxi162Scf00228g00099 Petunia axillaris HOM05D005081 ORTHO05D005506 1.7e-14 84.0 101 46.5
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 3.9e-14 82.8 247 31.6
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 3.9e-14 82.8 247 31.6
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 3.9e-14 82.8 247 31.6
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 1.5e-13 80.9 240 31.2
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 4.3e-13 79.3 239 31.8
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 5.6e-13 79.0 257 31.9
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 5.6e-13 79.0 235 32.8
Peaxi162Scf00020g00002 Petunia axillaris HOM05D005081 ORTHO05D005506 9.6e-13 78.2 91 48.4
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 9.6e-13 78.2 235 32.8
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 2.8e-12 76.6 93 47.3
MD15G1102900 Malus domestica HOM05D005081 ORTHO05D005506 6.2e-12 75.5 239 30.5
FvH4_2g36450 Fragaria vesca HOM05D026897 ORTHO05D005506 1.4e-11 74.3 244 30.7
FAN27G3206 Fragaria x ananassa HOM05D026897 ORTHO05D005506 5.3e-11 72.4 214 30.8
RcHm_v2.0_Chr6g0305451 Rosa chinensis HOM05D005081 ORTHO05D005506 6.9e-11 72.0 171 32.2
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 2.0e-10 70.5 149 37.6
FAN15G2850 Fragaria x ananassa HOM05D026897 ORTHO05D005506 5.8e-10 68.9 212 30.2
Peaxi162Scf00451g00717 Petunia axillaris HOM05D005081 ORTHO05D005506 1.3e-09 67.8 91 42.9
FAN20G0355 Fragaria x ananassa HOM05D026897 ORTHO05D005506 2.2e-09 67.0 161 31.7
Peaxi162Scf00543g00012 Petunia axillaris HOM05D005081 ORTHO05D005506 2.9e-09 66.6 90 46.7
Glyma.04G077700 Glycine max HOM05D027503 ORTHO05D005506 5.4e-08 62.4 144 34.7
MD08G1124200 Malus domestica HOM05D005081 ORTHO05D005506 7.1e-08 62.0 245 29.0
Atru.chr7.2685 Acer truncatum HOM05D005081 ORTHO05D005506 2.7e-07 60.1 187 29.4
Peaxi162Scf47975g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 7.9e-07 58.5 80 45.0


User provided reference genes

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