Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.2046 Acer truncatum HOM05D000278 ORTHO05D016406 1.4e-30 135.6 68 100.0
Atru.chr13.180 Acer truncatum HOM05D000278 ORTHO05D004673 1.3e-15 85.9 68 72.1
TWI56G0512 Tripterygium wilfordii HOM05D000278 ORTHO05D004673 5.0e-15 84.0 68 67.6
TWI36G1689 Tripterygium wilfordii HOM05D000278 ORTHO05D004673 6.5e-15 83.6 68 67.6
CiPaw.07G141600 Carya illinoinensis HOM05D000278 ORTHO05D004673 5.5e-14 80.5 68 66.2
Haze_22737 Corylus avellana HOM05D000278 ORTHO05D004673 7.2e-14 80.1 68 66.2
PGR083G0799 Punica granatum HOM05D000278 ORTHO05D004673 7.2e-14 80.1 68 64.7
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 9.4e-14 79.7 68 66.2
Manes.05G141000 Manihot esculenta HOM05D000278 ORTHO05D004673 1.2e-13 79.3 68 64.7
Manes.18G007600 Manihot esculenta HOM05D000278 ORTHO05D004673 1.2e-13 79.3 68 64.7
Nn6g31844 Nelumbo nucifera HOM05D000278 ORTHO05D004673 1.2e-13 79.3 68 64.7
QL02p013553 Quercus lobata HOM05D000278 ORTHO05D004673 1.2e-13 79.3 68 64.7
Cpa.g.sc26.235 Carica papaya HOM05D000278 ORTHO05D004673 1.6e-13 79.0 68 66.2
Ciclev10000836m.g Citrus clementina HOM05D000278 ORTHO05D004673 1.6e-13 79.0 68 64.7
Thecc.08G054800 Theobroma cacao HOM05D000278 ORTHO05D004673 2.1e-13 78.6 68 63.2
Eucgr.F03537 Eucalyptus grandis HOM05D000278 ORTHO05D004673 2.7e-13 78.2 68 64.7
MD08G1005100 Malus domestica HOM05D000278 ORTHO05D004673 2.7e-13 78.2 68 61.8
MD15G1004500 Malus domestica HOM05D000278 ORTHO05D004673 2.7e-13 78.2 68 61.8
Gohir.A05G255100 Gossypium hirsutum HOM05D000278 ORTHO05D004673 3.6e-13 77.8 80 58.8
Eucgr.F01711 Eucalyptus grandis HOM05D000278 ORTHO05D004673 4.7e-13 77.4 68 60.3
Prupe.1G357200 Prunus persica HOM05D000278 ORTHO05D004673 4.7e-13 77.4 68 61.8
MSTRG.22358 Avicennia marina HOM05D000278 ORTHO05D004673 6.1e-13 77.0 68 63.2
BcaB05g22804 Brassica carinata HOM05D000278 ORTHO05D004673 6.1e-13 77.0 68 64.7
BcaB08g37325 Brassica carinata HOM05D000278 ORTHO05D004673 6.1e-13 77.0 68 64.7
BcaC03g13811 Brassica carinata HOM05D000278 ORTHO05D004673 6.1e-13 77.0 68 64.7
BcaC04g19481 Brassica carinata HOM05D000278 ORTHO05D004673 6.1e-13 77.0 68 64.7
A10p19170 Brassica napus HOM05D000278 ORTHO05D004673 6.1e-13 77.0 68 64.7
BNapus_Darmor_BZH_scaffold_38p01290 Brassica napus HOM05D000278 ORTHO05D004673 6.1e-13 77.0 68 64.7
C09p55210 Brassica napus HOM05D000278 ORTHO05D004673 6.1e-13 77.0 68 64.7
BolC2t07080H Brassica oleracea HOM05D000278 ORTHO05D004673 6.1e-13 77.0 68 64.7
BolC9t58390H Brassica oleracea HOM05D000278 ORTHO05D004673 6.1e-13 77.0 68 64.7
BraA10t43992Z Brassica rapa HOM05D000278 ORTHO05D004673 6.1e-13 77.0 68 64.7
Carub.0006s1918 Capsella rubella HOM05D000278 ORTHO05D004673 6.1e-13 77.0 68 64.7
Lj1g0004523 Lotus japonicus HOM05D000278 ORTHO05D004673 6.1e-13 77.0 68 64.7
Sp6g23630 Schrenkiella parvula HOM05D000278 ORTHO05D004673 6.1e-13 77.0 68 64.7
COL.COLO4_26052 Corchorus olitorius HOM05D000278 ORTHO05D004673 8.0e-13 76.6 68 63.2
Duzib093G1085 Durio zibethinus HOM05D000278 ORTHO05D004673 8.0e-13 76.6 68 63.2
Duzib116G0529 Durio zibethinus HOM05D000278 ORTHO05D004673 8.0e-13 76.6 68 63.2
Gohir.D05G256700 Gossypium hirsutum HOM05D000278 ORTHO05D004673 8.0e-13 76.6 68 63.2
Gorai.009G268200 Gossypium raimondii HOM05D000278 ORTHO05D004673 8.0e-13 76.6 68 63.2
AT5G20890 Arabidopsis thaliana HOM05D000278 ORTHO05D004673 1.0e-12 76.3 68 64.7
arahy.Tifrunner.gnm1.ann1.456QL1 Arachis hypogaea HOM05D000278 ORTHO05D004673 1.4e-12 75.9 68 61.8
arahy.Tifrunner.gnm1.ann1.N7I05Z Arachis hypogaea HOM05D000278 ORTHO05D004673 1.4e-12 75.9 68 61.8
Nn5g30892 Nelumbo nucifera HOM05D000278 ORTHO05D004673 1.4e-12 75.9 68 58.8
Potri.006G128600 Populus trichocarpa HOM05D000278 ORTHO05D004673 1.4e-12 75.9 68 63.2
unitig_744.g24606 Utricularia gibba HOM05D000278 ORTHO05D004673 1.4e-12 75.9 68 63.2
C02p10490 Brassica napus HOM05D000278 ORTHO05D004673 1.8e-12 75.5 68 63.2
BraA02t05601Z Brassica rapa HOM05D000278 ORTHO05D004673 1.8e-12 75.5 68 63.2
FvH4_2g37790 Fragaria vesca HOM05D000278 ORTHO05D004673 1.8e-12 75.5 68 61.8
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.8e-12 75.5 68 61.8
FAN20G0278 Fragaria x ananassa HOM05D000278 ORTHO05D004673 1.8e-12 75.5 68 61.8
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.8e-12 75.5 68 61.8
Potri.001G341100 Populus trichocarpa HOM05D000278 ORTHO05D004673 1.8e-12 75.5 68 63.2
Gohir.A05G181500 Gossypium hirsutum HOM05D000278 ORTHO05D004673 2.3e-12 75.1 68 61.8
Gohir.D05G184500 Gossypium hirsutum HOM05D000278 ORTHO05D004673 2.3e-12 75.1 68 61.8
Gorai.009G190000 Gossypium raimondii HOM05D000278 ORTHO05D004673 2.3e-12 75.1 68 61.8
Nn3g20772 Nelumbo nucifera HOM05D000513 ORTHO05D011790 2.3e-12 75.1 68 57.4
AL6G32440 Arabidopsis lyrata HOM05D000278 ORTHO05D004673 3.0e-12 74.7 68 63.2
A03p10340 Brassica napus HOM05D000278 ORTHO05D004673 3.0e-12 74.7 68 63.2
C03p11870 Brassica napus HOM05D000278 ORTHO05D004673 3.0e-12 74.7 68 63.2
BolC3t13657H Brassica oleracea HOM05D000278 ORTHO05D004673 3.0e-12 74.7 68 63.2
BraA03t10345Z Brassica rapa HOM05D000278 ORTHO05D004673 3.0e-12 74.7 68 63.2
Aa31LG1G13870 Aethionema arabicum HOM05D000278 ORTHO05D004673 4.0e-12 74.3 68 63.2
Medtr7g067470 Medicago truncatula HOM05D000278 ORTHO05D004673 4.0e-12 74.3 68 60.3
Medtr7g113470 Medicago truncatula HOM05D000278 ORTHO05D004673 4.0e-12 74.3 68 60.3
RcHm_v2.0_Chr6g0303921 Rosa chinensis HOM05D000278 ORTHO05D004673 4.0e-12 74.3 68 60.3
Zm00001eb127430 Zea mays HOM05D000278 ORTHO05D004673 4.0e-12 74.3 68 61.8
TPR.G31895 Trifolium pratense HOM05D000278 ORTHO05D004673 5.2e-12 73.9 68 58.8
TPR.G4726 Trifolium pratense HOM05D000278 ORTHO05D004673 5.2e-12 73.9 68 58.8
Lalb_Chr03g0043101 Lupinus albus HOM05D000278 ORTHO05D004673 6.8e-12 73.6 68 60.3
Peaxi162Scf00892g00123 Petunia axillaris HOM05D000278 ORTHO05D004673 6.8e-12 73.6 68 60.3
Sabra06G0101200 Salix brachista HOM05D000054 ORTHO05D000286 6.8e-12 73.6 73 57.5
SGA_v2.0_scaffold275G46553 Striga asiatica HOM05D000278 ORTHO05D004673 6.8e-12 73.6 68 63.2
MSTRG.24226 Avicennia marina HOM05D000278 ORTHO05D004673 8.8e-12 73.2 68 61.8
Ca_07625_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004673 8.8e-12 73.2 68 60.3
Dinv39570 Davidia involucrata HOM05D000278 ORTHO05D004673 8.8e-12 73.2 68 61.8
SalBow6G3216 Salvia bowleyana HOM05D000278 ORTHO05D004673 8.8e-12 73.2 68 61.8
Dinv32530 Davidia involucrata HOM05D000278 ORTHO05D004673 1.2e-11 72.8 68 61.8
Duzib041G0210 Durio zibethinus HOM05D000278 ORTHO05D004673 1.2e-11 72.8 68 58.8
ECA240G2245 Erigeron canadensis HOM05D000278 ORTHO05D004673 1.2e-11 72.8 80 56.2
Lsat_1_v5_gn_5_47521 Lactuca sativa HOM05D000278 ORTHO05D004673 1.2e-11 72.8 80 57.5
Aqoxy7G00805 Aquilegia oxysepala HOM05D000278 ORTHO05D004673 1.5e-11 72.4 68 60.3
Ca_05203_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004673 1.5e-11 72.4 68 60.3
Migut.C00506 Erythranthe guttata HOM05D000278 ORTHO05D004673 1.5e-11 72.4 68 61.8
Glyma.12G087300 Glycine max HOM05D000278 ORTHO05D004673 1.5e-11 72.4 68 60.3
Rhsim04G0232000 Rhododendron simsii HOM05D000278 ORTHO05D004673 1.5e-11 72.4 68 61.8
Rhsim06G0057200 Rhododendron simsii HOM05D000278 ORTHO05D004673 1.5e-11 72.4 68 61.8
RhsimUnG0194000 Rhododendron simsii HOM05D000278 ORTHO05D004673 1.5e-11 72.4 68 61.8
SGA_v2.0_scaffold25G11193 Striga asiatica HOM05D000278 ORTHO05D004673 2.0e-11 72.0 80 56.2
Glyma.11G185500 Glycine max HOM05D000278 ORTHO05D004673 3.4e-11 71.2 68 58.8
Phvul.011G092200 Phaseolus vulgaris HOM05D000278 ORTHO05D004673 3.4e-11 71.2 68 58.8
THA.LOC104800468 Tarenaya hassleriana HOM05D000278 ORTHO05D004673 3.4e-11 71.2 68 61.8
Lj6g0017523 Lotus japonicus HOM05D000278 ORTHO05D004673 4.4e-11 70.9 68 57.4
Nn2g11830 Nelumbo nucifera HOM05D000278 ORTHO05D016406 4.4e-11 70.9 65 53.8
PSO675G6493 Papaver somniferum HOM05D000278 ORTHO05D004673 4.4e-11 70.9 68 60.3
Hund12360 Selenicereus undatus HOM05D000278 ORTHO05D004673 4.4e-11 70.9 68 58.8
Cc01_g07800 Coffea canephora HOM05D000278 ORTHO05D004673 5.7e-11 70.5 68 60.3
HanXRQChr02g0048731 Helianthus annuus HOM05D000278 ORTHO05D004673 5.7e-11 70.5 68 61.8
HanXRQChr05g0150641 Helianthus annuus HOM05D000278 ORTHO05D004673 5.7e-11 70.5 68 61.8
HanXRQChr05g0150651 Helianthus annuus HOM05D000278 ORTHO05D004673 5.7e-11 70.5 68 61.8
Lj4A877T44 Lonicera japonica HOM05D000278 ORTHO05D004673 5.7e-11 70.5 68 60.3
Aqoxy6G01859 Aquilegia oxysepala HOM05D000278 ORTHO05D004673 7.5e-11 70.1 68 58.8
DCAR_009520 Daucus carota HOM05D000278 ORTHO05D004673 7.5e-11 70.1 68 60.3
Nitab4.5_0001163g0130 Nicotiana tabacum HOM05D000278 ORTHO05D004673 7.5e-11 70.1 68 61.8
Nitab4.5_0012306g0010 Nicotiana tabacum HOM05D000278 ORTHO05D004673 7.5e-11 70.1 68 61.8
Dinv31912 Davidia involucrata HOM05D000278 ORTHO05D004673 9.8e-11 69.7 68 58.8
Hma1.2p1_1100F.1_g257140 Hydrangea macrophylla HOM05D000278 ORTHO05D004673 9.8e-11 69.7 79 53.2
MBI08_g05384_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D004673 9.8e-11 69.7 68 60.3
THA.LOC104826462 Tarenaya hassleriana HOM05D000278 ORTHO05D004673 9.8e-11 69.7 68 61.8
vmacro19453 Vaccinium macrocarpon HOM05D000278 ORTHO05D004673 9.8e-11 69.7 68 61.8
GSVIVG01008708001 Vitis vinifera HOM05D000278 ORTHO05D004673 9.8e-11 69.7 68 60.3
CAN.G546.19 Capsicum annuum HOM05D000278 ORTHO05D004673 1.3e-10 69.3 80 55.0
Thhalv10013239m.g Eutrema salsugineum HOM05D000278 ORTHO05D004673 1.3e-10 69.3 68 60.3
CARHR191960 Cardamine hirsuta HOM05D000278 ORTHO05D004673 1.7e-10 68.9 68 58.8
PSO541G0609 Papaver somniferum HOM05D000278 ORTHO05D004673 1.7e-10 68.9 67 59.7
Nn1g03634 Nelumbo nucifera HOM05D000278 ORTHO05D004673 2.2e-10 68.6 66 56.1
Lsat_1_v5_gn_3_23880 Lactuca sativa HOM05D000278 ORTHO05D004673 2.8e-10 68.2 68 58.8
CSS0037161 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004673 3.7e-10 67.8 68 58.8
Nn1g01173 Nelumbo nucifera HOM05D000278 ORTHO05D016406 4.8e-10 67.4 68 51.5
Os05g0556700 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004673 4.8e-10 67.4 68 57.4
Solyc11g069000.2 Solanum lycopersicum HOM05D000278 ORTHO05D004673 4.8e-10 67.4 80 53.8
Sopen08g014310 Solanum pennellii HOM05D000278 ORTHO05D004673 4.8e-10 67.4 80 53.8
Sopen11g027710 Solanum pennellii HOM05D000278 ORTHO05D004673 4.8e-10 67.4 80 53.8
PGSC0003DMG400019637 Solanum tuberosum HOM05D000278 ORTHO05D004673 4.8e-10 67.4 80 53.8
Nitab4.5_0000329g0270 Nicotiana tabacum HOM05D000278 ORTHO05D004673 6.3e-10 67.0 68 57.4
Nitab4.5_0005092g0060 Nicotiana tabacum HOM05D000278 ORTHO05D004673 6.3e-10 67.0 68 57.4
PGSC0003DMG400012727 Solanum tuberosum HOM05D000278 ORTHO05D004673 1.4e-09 65.9 78 53.8
Cc10_g11410 Coffea canephora HOM05D000278 ORTHO05D016406 2.4e-09 65.1 56 64.3
CAN.G1001.51 Capsicum annuum HOM05D000278 ORTHO05D004673 3.1e-09 64.7 68 57.4
HPP92_017262 Vanilla planifolia HOM05D000278 ORTHO05D004673 5.4e-09 63.9 70 54.3
Actinidia29778 Actinidia chinensis HOM05D000278 ORTHO05D004673 9.1e-09 63.2 68 57.4
CSS0016813 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D016406 1.2e-08 62.8 66 54.5
CSS0027085 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D016406 2.0e-08 62.0 68 55.9
Actinidia37961 Actinidia chinensis HOM05D000278 ORTHO05D004673 2.7e-08 61.6 68 55.9
Pp3c6_15940 Physcomitrium patens HOM05D000278 ORTHO05D004673 1.0e-07 59.7 67 50.7
Mapoly0071s0007 Marchantia polymorpha HOM05D000278 ORTHO05D004673 2.9e-07 58.2 68 50.0
SMO116G0467 Selaginella moellendorffii HOM05D000278 ORTHO05D004673 2.9e-07 58.2 68 45.6
Pp3c5_16830 Physcomitrium patens HOM05D000278 ORTHO05D004673 1.5e-06 55.8 67 46.3
PRCOL_00000789 Prasinoderma coloniale HOM05D000278 ORTHO05D004673 7.2e-06 53.5 65 49.2


User provided reference genes

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