Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.2012 Acer truncatum HOM05D002799 ORTHO05D008889 1.5e-104 382.9 197 100.0
Potri.019G048200 Populus trichocarpa HOM05D002799 ORTHO05D008889 2.6e-64 249.2 188 67.6
Thecc.04G001600 Theobroma cacao HOM05D002799 ORTHO05D008889 4.4e-64 248.4 192 65.1
CSS0012005 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 5.8e-64 248.1 192 66.1
CSS0036576 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 5.8e-64 248.1 192 66.1
Sabra19G0057600 Salix brachista HOM05D002799 ORTHO05D008889 2.2e-63 246.1 193 66.3
TAR629G0193 Trochodendron aralioides HOM05D002799 ORTHO05D008889 4.9e-63 245.0 192 65.1
Haze_00591 Corylus avellana HOM05D002799 ORTHO05D008889 6.4e-63 244.6 192 66.1
Manes.08G164500 Manihot esculenta HOM05D002799 ORTHO05D008889 2.4e-62 242.7 184 66.8
QL09p025834 Quercus lobata HOM05D002799 ORTHO05D008889 7.1e-62 241.1 195 64.1
Ciclev10032834m.g Citrus clementina HOM05D002799 ORTHO05D008889 1.2e-61 240.4 199 64.8
TWI60G0329 Tripterygium wilfordii HOM05D002799 ORTHO05D008889 2.7e-61 239.2 184 66.3
Eucgr.K03383 Eucalyptus grandis HOM05D002799 ORTHO05D008889 7.8e-61 237.7 195 62.1
Gohir.D11G175400 Gossypium hirsutum HOM05D002799 ORTHO05D008889 7.8e-61 237.7 192 63.5
Dinv29173 Davidia involucrata HOM05D002799 ORTHO05D008889 1.0e-60 237.3 192 65.6
Gohir.A11G169200 Gossypium hirsutum HOM05D002799 ORTHO05D008889 1.3e-60 236.9 192 63.5
Gorai.007G188000 Gossypium raimondii HOM05D002799 ORTHO05D008889 1.3e-60 236.9 192 63.5
RcHm_v2.0_Chr1g0383841 Rosa chinensis HOM05D002799 ORTHO05D008889 1.3e-60 236.9 191 64.9
CiPaw.05G237000 Carya illinoinensis HOM05D002799 ORTHO05D008889 3.0e-60 235.7 192 63.5
Actinidia08736 Actinidia chinensis HOM05D002799 ORTHO05D008889 5.1e-60 235.0 188 63.8
Nn1g02011 Nelumbo nucifera HOM05D002799 ORTHO05D008889 3.3e-59 232.3 192 62.5
MD07G1305700 Malus domestica HOM05D002799 ORTHO05D008889 5.6e-59 231.5 193 64.8
Rhsim03G0220500 Rhododendron simsii HOM05D000526 ORTHO05D000956 5.6e-59 231.5 186 64.5
FvH4_7g33591 Fragaria vesca HOM05D002799 ORTHO05D008889 9.6e-59 230.7 191 62.8
Prupe.2G323800 Prunus persica HOM05D002799 ORTHO05D008889 9.6e-59 230.7 192 63.0
DCAR_010548 Daucus carota HOM05D002799 ORTHO05D008889 1.6e-58 229.9 192 62.0
Cc05_g12950 Coffea canephora HOM05D002799 ORTHO05D008889 2.8e-58 229.2 188 63.3
FvH4_7g33580 Fragaria vesca HOM05D002799 ORTHO05D008889 2.8e-58 229.2 191 62.3
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.8e-58 229.2 191 62.8
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 4.8e-58 228.4 191 62.3
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.1e-57 227.3 191 62.3
GSVIVG01024450001 Vitis vinifera HOM05D002799 ORTHO05D008889 2.4e-57 226.1 192 59.9
Sopen10g002540 Solanum pennellii HOM05D002799 ORTHO05D008889 1.5e-56 223.4 192 58.3
Nitab4.5_0002229g0090 Nicotiana tabacum HOM05D002799 ORTHO05D008889 2.0e-56 223.0 192 58.3
Duzib133G0126 Durio zibethinus HOM05D002799 ORTHO05D008889 3.4e-56 222.2 157 68.8
Nitab4.5_0000207g0420 Nicotiana tabacum HOM05D002799 ORTHO05D008889 4.5e-56 221.9 192 58.3
TPR.G670 Trifolium pratense HOM05D002799 ORTHO05D008889 9.9e-56 220.7 186 60.8
MSTRG.17884 Avicennia marina HOM05D002799 ORTHO05D008889 1.7e-55 219.9 196 59.7
PGSC0003DMG400024993 Solanum tuberosum HOM05D002799 ORTHO05D008889 3.8e-55 218.8 192 58.3
CAN.G1110.21 Capsicum annuum HOM05D002799 ORTHO05D008889 1.9e-54 216.5 192 58.3
Medtr8g063470 Medicago truncatula HOM05D002799 ORTHO05D008889 2.4e-54 216.1 192 58.9
THA.LOC104803694 Tarenaya hassleriana HOM05D002799 ORTHO05D008889 5.4e-54 214.9 197 56.3
vmacro06499 Vaccinium macrocarpon HOM05D002799 ORTHO05D008889 5.4e-54 214.9 158 67.1
Oeu053393.1 Olea europaea HOM05D002799 ORTHO05D008889 1.6e-53 213.4 159 67.3
ECA236G2689 Erigeron canadensis HOM05D002799 ORTHO05D008889 2.7e-53 212.6 196 58.2
Glyma.18G134600 Glycine max HOM05D002799 ORTHO05D008889 1.3e-52 210.3 183 57.4
Nn3g19277 Nelumbo nucifera HOM05D002799 ORTHO05D008889 2.3e-52 209.5 157 64.3
arahy.Tifrunner.gnm1.ann1.LMI616 Arachis hypogaea HOM05D002799 ORTHO05D008889 6.7e-52 208.0 189 56.6
BcaC04g23004 Brassica carinata HOM05D002799 ORTHO05D008889 6.7e-52 208.0 193 55.4
C09p13130 Brassica napus HOM05D002799 ORTHO05D008889 6.7e-52 208.0 193 55.4
AL3G49530 Arabidopsis lyrata HOM05D002799 ORTHO05D008889 1.1e-51 207.2 194 55.2
A09p11140 Brassica napus HOM05D002799 ORTHO05D008889 1.5e-51 206.8 193 55.4
SGA_v2.0_scaffold70G23573 Striga asiatica HOM05D002799 ORTHO05D008889 1.5e-51 206.8 185 59.5
arahy.Tifrunner.gnm1.ann1.10QB4Z Arachis hypogaea HOM05D002799 ORTHO05D008889 1.9e-51 206.5 189 56.6
Sp3g29930 Schrenkiella parvula HOM05D002799 ORTHO05D008889 1.9e-51 206.5 195 55.4
Lj1P1032T28 Lonicera japonica HOM05D002799 ORTHO05D008889 2.5e-51 206.1 154 68.2
Lalb_Chr09g0335071 Lupinus albus HOM05D002799 ORTHO05D008889 2.5e-51 206.1 183 57.9
Migut.M01834 Erythranthe guttata HOM05D002799 ORTHO05D008889 3.3e-51 205.7 191 55.5
arahy.Tifrunner.gnm1.ann1.31RF02 Arachis hypogaea HOM05D002799 ORTHO05D008889 5.6e-51 204.9 189 56.1
CANSAT21G1155 Cannabis sativa HOM05D002799 ORTHO05D008889 5.6e-51 204.9 182 60.4
arahy.Tifrunner.gnm1.ann1.B4EAVD Arachis hypogaea HOM05D002799 ORTHO05D008889 7.4e-51 204.5 189 56.1
BcaB07g31750 Brassica carinata HOM05D002799 ORTHO05D008889 7.4e-51 204.5 193 55.4
VMungo0251G2787 Vigna mungo HOM05D002799 ORTHO05D008889 7.4e-51 204.5 183 56.8
BraA09t36756Z Brassica rapa HOM05D002799 ORTHO05D008889 9.6e-51 204.1 189 55.6
Phvul.003G053900 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 9.6e-51 204.1 187 54.5
Lj4g0019925 Lotus japonicus HOM05D002799 ORTHO05D008889 1.3e-50 203.8 163 58.9
Sed0001745 Sechium edule HOM05D002799 ORTHO05D008889 1.6e-50 203.4 184 58.7
EL10Ac3g05099 Beta vulgaris HOM05D002799 ORTHO05D008889 2.1e-50 203.0 182 57.1
CARHR107040 Cardamine hirsuta HOM05D002799 ORTHO05D008889 2.1e-50 203.0 194 53.1
Glyma.08G289900 Glycine max HOM05D002799 ORTHO05D008889 2.1e-50 203.0 183 55.7
MELO3C005426.2 Cucumis melo HOM05D002799 ORTHO05D008889 2.8e-50 202.6 186 58.1
Lsat_1_v5_gn_5_146100 Lactuca sativa HOM05D002799 ORTHO05D008889 2.8e-50 202.6 187 57.2
Phvul.003G054200 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 2.8e-50 202.6 187 54.0
Carub.0003s3061 Capsella rubella HOM05D002799 ORTHO05D008889 4.8e-50 201.8 196 54.1
AT2G16790 Arabidopsis thaliana HOM05D002799 ORTHO05D008889 8.1e-50 201.1 194 53.6
Lsat_1_v5_gn_8_74380 Lactuca sativa HOM05D002799 ORTHO05D008889 8.1e-50 201.1 188 55.9
Aa31LG8G14030 Aethionema arabicum HOM05D002799 ORTHO05D008889 1.1e-49 200.7 186 53.8
AUR62028150 Chenopodium quinoa HOM05D002799 ORTHO05D008889 2.4e-49 199.5 183 56.8
CsaV3_5G005340 Cucumis sativus L. HOM05D002799 ORTHO05D008889 1.2e-48 197.2 182 57.1
BolC9t54208H Brassica oleracea HOM05D002799 ORTHO05D008889 2.0e-48 196.4 181 55.2
unitig_746.g26651 Utricularia gibba HOM05D002799 ORTHO05D008889 4.5e-48 195.3 189 54.5
Ah.04g157280 Amaranthus hybridus HOM05D002799 ORTHO05D008889 1.3e-47 193.7 188 53.7
Peaxi162Scf00257g00081 Petunia axillaris HOM05D002799 ORTHO05D008889 1.3e-47 193.7 154 61.7
Thhalv10022876m.g Eutrema salsugineum HOM05D002799 ORTHO05D008889 4.9e-47 191.8 185 55.1
Os06g0114650 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D008889 4.6e-45 185.3 182 54.4
Aqoxy7G00884 Aquilegia oxysepala HOM05D002799 ORTHO05D008889 2.3e-44 183.0 142 63.4
Solyc10g006600.4 Solanum lycopersicum HOM05D002799 ORTHO05D008889 7.4e-43 177.9 153 58.2
COL.COLO4_19775 Corchorus olitorius HOM05D002799 ORTHO05D008889 3.7e-42 175.6 131 64.9
PSO717G0064 Papaver somniferum HOM05D002799 ORTHO05D008889 3.1e-41 172.6 203 50.7
PSO675G5486 Papaver somniferum HOM05D002799 ORTHO05D008889 9.0e-41 171.0 203 51.2
Ca_14681_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 1.7e-39 166.8 130 62.3
Sc19g0000240 Simmondsia chinensis HOM05D002799 ORTHO05D008889 1.4e-38 163.7 137 60.6
PGR004G1571 Punica granatum HOM05D002799 ORTHO05D008889 2.5e-38 162.9 129 62.8
ClCG01G005050 Citrullus lanatus HOM05D002799 ORTHO05D008889 5.5e-38 161.8 134 61.9
TPR.G26908 Trifolium pratense HOM05D002799 ORTHO05D008889 2.7e-37 159.5 122 63.1
Psat4g127040 Pisum sativum HOM05D002799 ORTHO05D008889 6.1e-37 158.3 130 59.2
ATR0829G224 Amborella trichopoda HOM05D002799 ORTHO05D008889 2.3e-36 156.4 207 41.1
AagrBONN_evm.TU.Sc2ySwM_362.1504 Anthoceros agrestis HOM05D002799 ORTHO05D008889 5.7e-35 151.8 189 41.8
Mapoly0046s0106 Marchantia polymorpha HOM05D002799 ORTHO05D008889 2.8e-34 149.4 189 45.0
Pp3c5_2750 Physcomitrium patens HOM05D002799 ORTHO05D008889 5.3e-33 145.2 208 41.8
MD01G1233600 Malus domestica HOM05D002799 ORTHO05D008889 1.9e-30 136.7 110 61.8
Rhsim03G0164800 Rhododendron simsii HOM05D002799 ORTHO05D008889 5.5e-30 135.2 103 65.0
SMO174G0264 Selaginella moellendorffii HOM05D002799 ORTHO05D008889 6.7e-28 128.3 181 40.3
PSO675G4133 Papaver somniferum HOM05D002799 ORTHO05D008889 1.5e-24 117.1 152 45.4
HPP92_002455 Vanilla planifolia HOM05D002799 ORTHO05D008889 1.3e-23 114.0 188 37.8
SHI03438 Sapria himalayana HOM05D002799 ORTHO05D008889 2.9e-23 112.8 137 43.8
Cre08.g385750 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D008889 7.4e-19 98.2 182 36.3
PRCOL_00003203 Prasinoderma coloniale HOM05D002799 ORTHO05D008889 4.8e-18 95.5 186 37.6
BcaB03g16409 Brassica carinata HOM05D002799 ORTHO05D008889 4.1e-17 92.4 110 44.5
MCO08G110 Micromonas commoda HOM05D002799 ORTHO05D008889 2.6e-16 89.7 160 38.8
C07p06790 Brassica napus HOM05D002799 ORTHO05D008889 3.2e-14 82.8 131 39.7
Ca_28676_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 3.6e-13 79.3 165 33.3
Cfa026682 Carpinus fangiana HOM05D002799 ORTHO05D008889 6.7e-12 75.1 168 31.5
HanXRQChr10g0305151 Helianthus annuus HOM05D002799 ORTHO05D008889 2.6e-11 73.2 48 66.7


User provided reference genes

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