Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 5.5e-228 793.9 381 100.0
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 4.7e-155 551.6 351 79.2
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 6.6e-149 531.2 328 79.6
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 1.1e-148 530.4 351 73.2
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 1.1e-148 530.4 325 76.9
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 2.4e-146 522.7 359 71.3
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 2.4e-146 522.7 326 78.2
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 1.1e-143 513.8 335 74.0
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 3.2e-143 512.3 321 77.9
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 3.0e-141 505.8 325 76.6
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 3.9e-141 505.4 325 76.0
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 8.7e-141 504.2 327 77.1
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 1.9e-140 503.1 324 75.6
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 4.3e-140 501.9 322 76.4
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 4.3e-140 501.9 321 76.0
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 9.6e-140 500.7 326 76.1
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 2.1e-139 499.6 381 67.7
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 4.0e-138 495.4 326 72.4
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 5.3e-138 495.0 324 74.7
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 3.4e-137 492.3 332 73.8
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 1.3e-136 490.3 342 69.6
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 6.4e-136 488.0 344 69.8
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 4.2e-135 485.3 322 73.9
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 5.5e-135 485.0 381 62.7
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 7.1e-135 484.6 408 61.8
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 2.1e-134 483.0 333 69.4
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 2.1e-134 483.0 333 70.9
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 3.5e-134 482.3 325 71.7
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 7.9e-134 481.1 326 71.5
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.0e-133 480.7 379 62.0
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 1.0e-133 480.7 324 73.1
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.3e-133 480.3 379 62.5
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 3.0e-133 479.2 385 63.1
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 3.9e-133 478.8 321 72.6
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 5.1e-133 478.4 342 70.8
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 6.7e-133 478.0 324 73.1
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 8.7e-133 477.6 327 71.3
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 1.1e-132 477.2 342 70.8
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 1.9e-132 476.5 335 69.3
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 1.9e-132 476.5 349 67.3
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 2.5e-132 476.1 385 62.6
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 2.5e-132 476.1 341 67.7
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 9.6e-132 474.2 347 68.3
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 9.6e-132 474.2 347 68.3
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 1.3e-131 473.8 348 69.3
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 1.3e-131 473.8 335 69.0
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 2.1e-131 473.0 351 67.2
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 2.1e-131 473.0 321 69.8
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 4.8e-131 471.9 325 70.5
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 8.2e-131 471.1 364 64.6
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 8.2e-131 471.1 371 62.8
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 8.2e-131 471.1 328 70.7
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 1.1e-130 470.7 321 71.7
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 1.1e-130 470.7 321 71.7
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 1.1e-130 470.7 321 71.7
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 1.1e-130 470.7 327 70.6
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 1.4e-130 470.3 327 69.4
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 9.0e-130 467.6 337 68.2
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 3.4e-129 465.7 358 66.2
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 3.4e-129 465.7 321 70.7
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 1.3e-128 463.8 251 84.5
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 2.9e-128 462.6 314 73.2
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 2.5e-127 459.5 321 72.9
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 1.2e-126 457.2 325 70.5
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 2.7e-126 456.1 325 67.4
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 6.0e-126 454.9 364 65.7
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 1.0e-125 454.1 333 68.8
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 1.8e-125 453.4 344 66.9
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 2.5e-124 449.5 340 67.4
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 4.3e-124 448.7 361 65.1
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 1.6e-123 446.8 332 66.0
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 2.2e-123 446.4 327 67.9
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 2.8e-123 446.0 337 66.8
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 4.1e-122 442.2 322 66.5
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 5.3e-122 441.8 381 60.9
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 6.9e-122 441.4 335 64.2
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 9.0e-122 441.0 347 61.1
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.7e-120 436.8 246 81.7
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 6.5e-120 434.9 321 64.5
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 6.5e-120 434.9 333 64.3
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 4.2e-119 432.2 355 63.9
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 4.6e-118 428.7 317 67.5
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 5.7e-116 421.8 323 67.2
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 1.0e-112 411.0 340 61.8
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 2.9e-112 409.5 403 54.1
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 6.7e-109 398.3 331 63.1
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 2.8e-107 392.9 310 61.0
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 1.8e-106 390.2 329 62.3
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 1.0e-104 384.4 317 62.8
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 3.6e-102 375.9 329 57.1
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 1.0e-101 374.4 350 55.4
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 2.3e-101 373.2 233 72.5
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 1.1e-100 370.9 266 68.0
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 4.5e-97 359.0 230 72.2
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 7.7e-97 358.2 192 83.9
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 1.5e-95 354.0 266 64.7
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 8.3e-91 338.2 369 50.9
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 7.0e-90 335.1 377 53.3
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.2e-89 334.3 193 81.3
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 3.0e-85 319.7 278 54.7
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 7.5e-84 315.1 280 54.6
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 2.0e-76 290.4 273 52.0
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 6.3e-75 285.4 353 42.5
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 8.9e-69 265.0 196 60.2
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 3.7e-67 259.6 227 55.1
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 1.1e-66 258.1 294 50.0
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 3.4e-60 236.5 123 84.6
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 1.2e-57 228.0 125 79.2
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 7.8e-57 225.3 218 56.9
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 5.1e-56 222.6 241 51.0
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 8.6e-56 221.9 187 62.6
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 1.2e-54 218.0 114 91.2
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 1.0e-48 198.4 112 84.8
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 5.1e-40 169.5 173 55.5
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 2.5e-39 167.2 272 39.7
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 8.1e-38 162.2 99 75.8
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 2.0e-36 157.5 173 53.8
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 1.4e-34 151.4 197 41.1
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 4.9e-27 126.3 186 43.5
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 6.4e-27 125.9 62 83.9
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 1.9e-26 124.4 98 65.3
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.6e-25 121.3 138 47.8
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 2.7e-25 120.6 73 78.1
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 7.9e-25 119.0 299 28.1
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 1.3e-22 111.7 61 90.2
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 2.8e-22 110.5 63 85.7
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 9.0e-21 105.5 197 38.6
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 1.2e-20 105.1 55 76.4
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 1.5e-20 104.8 101 54.5
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 7.1e-18 95.9 78 60.3
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 2.3e-16 90.9 122 44.3
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 1.9e-15 87.8 77 57.1
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 2.4e-13 80.9 203 33.0
Cpa.g.sc67.52 Carica papaya HOM05D002799 ORTHO05D007076 5.8e-12 76.3 93 48.4
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 9.3e-10 68.9 45 73.3
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 2.1e-09 67.8 51 64.7


User provided reference genes

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