Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1955 Acer truncatum HOM05D001967 ORTHO05D001929 6.7e-54 213.8 109 100.0
QL09p020820 Quercus lobata HOM05D001967 ORTHO05D001929 2.3e-22 109.0 77 71.4
Sabra19G0052100 Salix brachista HOM05D001967 ORTHO05D001929 1.2e-21 106.7 82 67.1
Cfa016072 Carpinus fangiana HOM05D001967 ORTHO05D001929 1.5e-21 106.3 77 67.5
Potri.013G078100 Populus trichocarpa HOM05D001967 ORTHO05D001929 2.0e-21 105.9 77 70.1
Manes.08G161240 Manihot esculenta HOM05D001967 ORTHO05D001929 1.7e-20 102.8 77 68.8
Manes.09G129400 Manihot esculenta HOM05D001967 ORTHO05D001929 1.7e-20 102.8 77 68.8
Potri.019G041700 Populus trichocarpa HOM05D001967 ORTHO05D001929 1.7e-20 102.8 82 64.6
Thecc.05G222200 Theobroma cacao HOM05D001967 ORTHO05D001929 1.7e-20 102.8 77 70.1
GSVIVG01024331001 Vitis vinifera HOM05D001967 ORTHO05D001929 3.7e-20 101.7 77 67.5
COL.COLO4_15148 Corchorus olitorius HOM05D001967 ORTHO05D001929 7.0e-19 97.4 77 64.9
Eucgr.A02989 Eucalyptus grandis HOM05D001967 ORTHO05D001929 9.2e-19 97.1 85 54.1
Actinidia33798 Actinidia chinensis HOM05D001967 ORTHO05D001929 1.2e-18 96.7 77 64.9
Gohir.A13G157300 Gossypium hirsutum HOM05D001967 ORTHO05D001929 1.6e-18 96.3 77 63.6
Gohir.A11G303000 Gossypium hirsutum HOM05D001967 ORTHO05D001929 3.5e-18 95.1 77 61.0
Gohir.D11G318300 Gossypium hirsutum HOM05D001967 ORTHO05D001929 3.5e-18 95.1 77 61.0
Gohir.D13G162100 Gossypium hirsutum HOM05D001967 ORTHO05D001929 4.5e-18 94.7 77 62.3
Gorai.013G184100 Gossypium raimondii HOM05D001967 ORTHO05D001929 7.8e-18 94.0 77 62.3
Actinidia33615 Actinidia chinensis HOM05D001189 ORTHO05D001027 1.0e-17 93.6 77 64.9
Gorai.007G348300 Gossypium raimondii HOM05D001967 ORTHO05D001929 1.7e-17 92.8 77 59.7
Hma1.2p1_0419F.1_g149490 Hydrangea macrophylla HOM05D001967 ORTHO05D001929 1.7e-17 92.8 77 66.2
MELO3C021897.2 Cucumis melo HOM05D001967 ORTHO05D001929 2.3e-17 92.4 76 65.8
Sed0025867 Sechium edule HOM05D001967 ORTHO05D001929 3.8e-17 91.7 80 61.2
TAR629G0880 Trochodendron aralioides HOM05D001967 ORTHO05D001929 3.8e-17 91.7 77 59.7
vmacro06374 Vaccinium macrocarpon HOM05D001967 ORTHO05D001929 3.8e-17 91.7 85 57.6
CSS0024609 Camellia sinensis var. sinensis HOM05D001967 ORTHO05D001929 5.0e-17 91.3 76 64.5
CiPaw.05G213200 Carya illinoinensis HOM05D001967 ORTHO05D001929 5.0e-17 91.3 87 56.3
ClCG09G017260 Citrullus lanatus HOM05D001967 ORTHO05D001929 5.0e-17 91.3 76 65.8
Rhsim03G0224100 Rhododendron simsii HOM05D001967 ORTHO05D001929 5.0e-17 91.3 77 58.4
CiPaw.06G035900 Carya illinoinensis HOM05D001967 ORTHO05D001929 6.6e-17 90.9 85 57.6
Aqoxy3G02387 Aquilegia oxysepala HOM05D001967 ORTHO05D001929 8.6e-17 90.5 78 62.8
Cpa.g.sc43.127 Carica papaya HOM05D001967 ORTHO05D001929 1.1e-16 90.1 109 48.6
Dinv17245 Davidia involucrata HOM05D001967 ORTHO05D001929 1.5e-16 89.7 77 59.7
Duzib128G1086 Durio zibethinus HOM05D001967 ORTHO05D001929 1.5e-16 89.7 77 59.7
Duzib128G1144 Durio zibethinus HOM05D001967 ORTHO05D001929 1.9e-16 89.4 77 59.7
TWI60G1608 Tripterygium wilfordii HOM05D001967 ORTHO05D001929 1.9e-16 89.4 77 58.4
LjContig00222g0009289 Lotus japonicus HOM05D001967 ORTHO05D001929 2.5e-16 89.0 78 61.5
arahy.Tifrunner.gnm1.ann1.A9GYM3 Arachis hypogaea HOM05D001967 ORTHO05D001929 4.3e-16 88.2 82 56.1
arahy.Tifrunner.gnm1.ann1.BYM2EW Arachis hypogaea HOM05D001967 ORTHO05D001929 4.3e-16 88.2 82 56.1
Sopen03g028000 Solanum pennellii HOM05D001967 ORTHO05D001929 9.5e-16 87.0 80 61.2
PGSC0003DMG400026488 Solanum tuberosum HOM05D001967 ORTHO05D001929 9.5e-16 87.0 80 61.2
HanXRQChr16g0512721 Helianthus annuus HOM05D001967 ORTHO05D001929 1.2e-15 86.7 93 55.9
MBI04_g22935_MAGBIO Magnolia biondii HOM05D001967 ORTHO05D001929 1.2e-15 86.7 77 57.1
Sed0008334 Sechium edule HOM05D001967 ORTHO05D001929 1.2e-15 86.7 76 64.5
Cc02_g00130 Coffea canephora HOM05D001967 ORTHO05D001929 1.6e-15 86.3 77 54.5
Lsat_1_v5_gn_9_47781 Lactuca sativa HOM05D001967 ORTHO05D001929 2.1e-15 85.9 74 60.8
Solyc03g097250.4 Solanum lycopersicum HOM05D001967 ORTHO05D001929 2.1e-15 85.9 80 60.0
ECA232G3630 Erigeron canadensis HOM05D001967 ORTHO05D001929 3.6e-15 85.1 75 61.3
PGR042G0812 Punica granatum HOM05D001967 ORTHO05D001929 3.6e-15 85.1 78 59.0
TWI34G0142 Tripterygium wilfordii HOM05D001967 ORTHO05D001929 1.0e-14 83.6 77 53.2
CsaV3_2G036670 Cucumis sativus L. HOM05D001967 ORTHO05D001929 1.8e-14 82.8 78 61.5
TAR636G1479 Trochodendron aralioides HOM05D001967 ORTHO05D001929 1.8e-14 82.8 77 54.5
Nn1g00514 Nelumbo nucifera HOM05D001967 ORTHO05D001929 2.3e-14 82.4 77 58.4
Peaxi162Scf00133g00525 Petunia axillaris HOM05D001967 ORTHO05D001929 2.3e-14 82.4 82 54.9
Gohir.A02G126500 Gossypium hirsutum HOM05D001967 ORTHO05D001929 3.0e-14 82.0 77 57.1
Nitab4.5_0000021g0830 Nicotiana tabacum HOM05D001967 ORTHO05D001929 3.0e-14 82.0 80 57.5
THA.LOC104802932 Tarenaya hassleriana HOM05D001967 ORTHO05D001929 3.0e-14 82.0 77 62.3
Ca_24430_v3 Cicer arietinum L. HOM05D001967 ORTHO05D001929 6.8e-14 80.9 79 58.2
Sc13g0010980 Simmondsia chinensis HOM05D001967 ORTHO05D001929 6.8e-14 80.9 81 54.3
AUR62002090 Chenopodium quinoa HOM05D001967 ORTHO05D001929 8.9e-14 80.5 78 57.7
C03p09100 Brassica napus HOM05D000175 ORTHO05D003181 1.5e-13 79.7 92 53.3
PSO063G7129 Papaver somniferum HOM05D001967 ORTHO05D001929 1.5e-13 79.7 78 53.8
Sp6g27490 Schrenkiella parvula HOM05D001967 ORTHO05D001929 2.0e-13 79.3 81 59.3
CDE06G0145 Ceratophyllum demersum HOM05D001967 ORTHO05D001929 2.6e-13 79.0 78 56.4
DCAR_009026 Daucus carota HOM05D001967 ORTHO05D001929 2.6e-13 79.0 77 51.9
Sp3g01950 Schrenkiella parvula HOM05D001967 ORTHO05D001929 3.4e-13 78.6 78 59.0
CsaV3_2G014040 Cucumis sativus L. HOM05D001967 ORTHO05D001929 4.4e-13 78.2 78 59.0
EL10Ac3g05046 Beta vulgaris HOM05D001967 ORTHO05D001929 7.5e-13 77.4 78 56.4
SalBow2G3444 Salvia bowleyana HOM05D001967 ORTHO05D001929 7.5e-13 77.4 77 54.5
VMungo1215G2959 Vigna mungo HOM05D001967 ORTHO05D001929 1.3e-12 76.6 79 50.6
A10p22550 Brassica napus HOM05D001967 ORTHO05D001929 1.7e-12 76.3 74 56.8
Phvul.002G041600 Phaseolus vulgaris HOM05D001967 ORTHO05D001929 1.7e-12 76.3 79 51.9
Dinv29128 Davidia involucrata HOM05D001967 ORTHO05D001929 2.2e-12 75.9 81 55.6
FvH4_7g34210 Fragaria vesca HOM05D001967 ORTHO05D001929 2.2e-12 75.9 78 53.8
FAN03G1573 Fragaria x ananassa HOM05D001967 ORTHO05D001929 2.2e-12 75.9 78 53.8
FAN10G2385 Fragaria x ananassa HOM05D001967 ORTHO05D001929 2.2e-12 75.9 78 53.8
Lj3A884G47 Lonicera japonica HOM05D001967 ORTHO05D001929 2.2e-12 75.9 76 55.3
A03p07900 Brassica napus HOM05D000175 ORTHO05D003181 2.9e-12 75.5 86 54.7
BraA10t44317Z Brassica rapa HOM05D001967 ORTHO05D001929 2.9e-12 75.5 74 55.4
Glyma.01G234200 Glycine max HOM05D001967 ORTHO05D001929 2.9e-12 75.5 57 68.4
Glyma.11G008700 Glycine max HOM05D001967 ORTHO05D001929 2.9e-12 75.5 86 54.7
RcHm_v2.0_Chr1g0384571 Rosa chinensis HOM05D001967 ORTHO05D001929 3.7e-12 75.1 77 54.5
Aa31LG11G12920 Aethionema arabicum HOM05D001967 ORTHO05D001929 4.9e-12 74.7 90 47.8
Gorai.003G057200 Gossypium raimondii HOM05D001967 ORTHO05D001929 4.9e-12 74.7 75 54.7
THA.LOC104820904 Tarenaya hassleriana HOM05D001967 ORTHO05D001929 4.9e-12 74.7 77 55.8
PSO782G0197 Papaver somniferum HOM05D001967 ORTHO05D001929 6.4e-12 74.3 78 53.8
AL3G12340 Arabidopsis lyrata HOM05D001967 ORTHO05D001929 8.3e-12 73.9 78 56.4
BraA03t10114Z Brassica rapa HOM05D001967 ORTHO05D001929 8.3e-12 73.9 79 55.7
Carub.0006s1487 Capsella rubella HOM05D001967 ORTHO05D001929 8.3e-12 73.9 81 54.3
Carub.0003s0202 Capsella rubella HOM05D001967 ORTHO05D001929 1.1e-11 73.6 78 55.1
CARHR196530 Cardamine hirsuta HOM05D001967 ORTHO05D001929 1.1e-11 73.6 88 50.0
CDE12G0693 Ceratophyllum demersum HOM05D001967 ORTHO05D001929 1.1e-11 73.6 78 55.1
Migut.F00932 Erythranthe guttata HOM05D001967 ORTHO05D001929 3.2e-11 72.0 77 49.4
MD01G1238800 Malus domestica HOM05D001967 ORTHO05D001929 3.2e-11 72.0 80 56.2
Nitab4.5_0005968g0010 Nicotiana tabacum HOM05D001967 ORTHO05D001929 4.1e-11 71.6 80 51.2
Prupe.2G328900 Prunus persica HOM05D001967 ORTHO05D001929 4.1e-11 71.6 87 49.4
unitig_736.g22837 Utricularia gibba HOM05D001967 ORTHO05D001929 5.4e-11 71.2 77 50.6
BcaB08g36830 Brassica carinata HOM05D001967 ORTHO05D001929 7.0e-11 70.9 77 57.1
Thhalv10014871m.g Eutrema salsugineum HOM05D001967 ORTHO05D001929 9.2e-11 70.5 81 53.1
Psat0s2012g0080 Pisum sativum HOM05D001967 ORTHO05D001929 9.2e-11 70.5 86 45.3
ATR0049G035 Amborella trichopoda HOM05D001967 ORTHO05D001929 1.6e-10 69.7 78 52.6
FAN01G1266 Fragaria x ananassa HOM05D001967 ORTHO05D001929 2.0e-10 69.3 84 50.0
AT3G02900 Arabidopsis thaliana HOM05D001967 ORTHO05D001929 2.7e-10 68.9 78 55.1
AT5G16660 Arabidopsis thaliana HOM05D001967 ORTHO05D001929 2.7e-10 68.9 76 55.3
MD07G1310700 Malus domestica HOM05D001967 ORTHO05D001929 4.6e-10 68.2 87 48.3
TPR.G37921 Trifolium pratense HOM05D001967 ORTHO05D001929 4.6e-10 68.2 89 47.2
Lalb_Chr05g0211201 Lupinus albus HOM05D001967 ORTHO05D001929 1.3e-09 66.6 79 49.4
Medtr5g007210 Medicago truncatula HOM05D001967 ORTHO05D001929 1.3e-09 66.6 81 55.6
SGA_v2.0_scaffold50G18459 Striga asiatica HOM05D001967 ORTHO05D001929 1.7e-09 66.2 77 48.1
AL6G27670 Arabidopsis lyrata HOM05D001967 ORTHO05D001929 2.3e-09 65.9 80 52.5
Psat2g154920 Pisum sativum HOM05D001967 ORTHO05D001929 3.9e-09 65.1 88 45.5
CANSAT21G0930 Cannabis sativa HOM05D001967 ORTHO05D001929 5.0e-09 64.7 52 61.5
Hund09809 Selenicereus undatus HOM05D001967 ORTHO05D001929 8.6e-09 63.9 73 52.1
MSTRG.8557 Avicennia marina HOM05D001967 ORTHO05D001929 1.5e-08 63.2 55 54.5
Aa31LG5G13390 Aethionema arabicum HOM05D001967 ORTHO05D001929 2.5e-08 62.4 77 49.4
Sabra13G0067100 Salix brachista HOM05D001967 ORTHO05D001929 9.5e-08 60.5 128 35.2
BolC9t58879H Brassica oleracea HOM05D001967 ORTHO05D001929 2.1e-07 59.3 79 49.4
Pp3c22_20660 Physcomitrium patens HOM05D001967 ORTHO05D001929 4.7e-07 58.2 37 70.3
arahy.Tifrunner.gnm1.ann1.5UU89E Arachis hypogaea HOM05D001967 ORTHO05D001929 1.8e-06 56.2 60 50.0
AUR62028208 Chenopodium quinoa HOM05D001967 ORTHO05D001929 6.8e-06 54.3 27 92.6
Oeu046978.1 Olea europaea HOM05D001967 ORTHO05D001929 6.8e-06 54.3 28 82.1
Lj3g0014147 Lotus japonicus HOM05D001967 ORTHO05D001929 8.9e-06 53.9 79 44.3


User provided reference genes

Program Settings